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Add find_valid_signed_* convenience operations
1 parent 0d80fd1 commit f356d3f

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+282
-2
lines changed

‎find_signed_things.rq

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#+ summary: Find things introduced in signed nanopublications (experimental)
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#+ summary: Find things introduced in signed nanopublications
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#+ method: GET
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#+ pagination: 1000
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#+ endpoint_in_url: False

‎find_things.rq

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#+ summary: Find things introduced in nanopublications (experimental)
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#+ summary: Find things introduced in nanopublications
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#+ method: GET
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#+ pagination: 1000
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#+ endpoint_in_url: False

‎find_valid_signed_nanopubs.rq

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#+ summary: Find signed nanopublications that are not retracted or superseded
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#+ method: GET
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#+ pagination: 1000
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#+ endpoint_in_url: False
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prefix np: <http://www.nanopub.org/nschema#>
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prefix npa: <http://purl.org/nanopub/admin/>
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prefix npx: <http://purl.org/nanopub/x/>
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prefix xsd: <http://www.w3.org/2001/XMLSchema#>
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prefix dct: <http://purl.org/dc/terms/>
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select ?np ?date ?pubkey where {
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graph npa:graph {
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?np npa:hasHeadGraph ?h .
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?np npa:creationDay ?__day_iri .
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?np npa:creationMonth ?__month_iri .
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?np npa:creationYear ?__year_iri .
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?np dct:created ?date .
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?np npa:hasValidSignatureForPublicKey ?__pubkey_xsd_string .
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bind(?__pubkey_xsd_string as ?pubkey)
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}
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filter not exists {
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graph npa:graph {
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?newversion npa:hasHeadGraph ?nh .
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?newversion npa:hasValidSignatureForPublicKey ?pubkey .
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}
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graph ?nh {
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?newversion np:hasPublicationInfo ?ni .
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}
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graph ?ni {
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?newversion npx:supersedes ?np .
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}
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}
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filter not exists {
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graph npa:graph {
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?retraction npa:hasHeadGraph ?rh .
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?retraction npa:hasValidSignatureForPublicKey ?pubkey .
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}
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graph ?rh {
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?retraction np:hasAssertion ?ra .
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}
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graph ?ra {
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?somebody npx:retracts ?np .
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}
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}
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}

‎find_valid_signed_nanopubs_with_pattern.rq

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#+ summary: Find signed nanopublications that are not retracted or superseded for the given triple pattern
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#+ method: GET
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#+ pagination: 1000
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#+ endpoint_in_url: False
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prefix np: <http://www.nanopub.org/nschema#>
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prefix npa: <http://purl.org/nanopub/admin/>
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prefix npx: <http://purl.org/nanopub/x/>
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prefix xsd: <http://www.w3.org/2001/XMLSchema#>
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prefix dct: <http://purl.org/dc/terms/>
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select ?np ?graphpred ?subj ?pred ?obj ?date ?pubkey where {
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graph npa:graph {
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?np npa:hasHeadGraph ?h .
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?np npa:creationDay ?__day_iri .
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?np npa:creationMonth ?__month_iri .
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?np npa:creationYear ?__year_iri .
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?np dct:created ?date .
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?np npa:hasValidSignatureForPublicKey ?__pubkey_xsd_string .
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bind(?__pubkey_xsd_string as ?pubkey)
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}
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graph ?h {
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?np ?__graphpred_iri ?g .
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bind(?__graphpred_iri as ?graphpred)
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}
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graph ?g {
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?__subj_iri ?__pred_iri ?__obj_iri .
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bind(?__subj_iri as ?subj)
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bind(?__pred_iri as ?pred)
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bind(?__obj_iri as ?obj)
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}
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filter not exists {
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graph npa:graph {
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?newversion npa:hasHeadGraph ?nh .
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?newversion npa:hasValidSignatureForPublicKey ?pubkey .
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}
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graph ?nh {
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?newversion np:hasPublicationInfo ?ni .
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}
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graph ?ni {
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?newversion npx:supersedes ?np .
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}
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}
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filter not exists {
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graph npa:graph {
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?retraction npa:hasHeadGraph ?rh .
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?retraction npa:hasValidSignatureForPublicKey ?pubkey .
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}
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graph ?rh {
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?retraction np:hasAssertion ?ra .
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}
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graph ?ra {
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?somebody npx:retracts ?np .
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}
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}
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}

‎find_valid_signed_nanopubs_with_text.rq

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#+ summary: Find signed nanopublications that are not retracted or superseded containing the given text
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#+ method: GET
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#+ pagination: 1000
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#+ endpoint_in_url: False
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prefix np: <http://www.nanopub.org/nschema#>
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prefix npa: <http://purl.org/nanopub/admin/>
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prefix npx: <http://purl.org/nanopub/x/>
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prefix xsd: <http://www.w3.org/2001/XMLSchema#>
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prefix dct: <http://purl.org/dc/terms/>
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prefix luc: <http://www.ontotext.com/owlim/lucene#> # for GraphDB
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#prefix bif: <http://www.openlinksw.com/schemas/bif#> # for Virtuoso
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select ?np ?graphpred ?subj ?pred ?v ?date ?pubkey ?superseded ?retracted where {
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graph npa:graph {
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?np npa:hasHeadGraph ?h .
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?np npa:creationDay ?__day_iri .
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?np npa:creationMonth ?__month_iri .
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?np npa:creationYear ?__year_iri .
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?np dct:created ?date .
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?np npa:hasValidSignatureForPublicKey ?__pubkey_xsd_string .
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bind(?__pubkey_xsd_string as ?pubkey)
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}
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graph ?h {
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?np ?__graphpred_iri ?g .
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bind(?__graphpred_iri as ?graphpred)
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}
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graph ?g {
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{ ?subj ?pred ?v . ?v luc:npIdx ?_text . }
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union
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{ ?subj ?pred ?v . ?v <bif:contains> ?_text . }
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}
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filter not exists {
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graph npa:graph {
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?newversion npa:hasHeadGraph ?nh .
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?newversion npa:hasValidSignatureForPublicKey ?pubkey .
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}
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graph ?nh {
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?newversion np:hasPublicationInfo ?ni .
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}
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graph ?ni {
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?newversion npx:supersedes ?np .
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}
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}
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filter not exists {
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graph npa:graph {
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?retraction npa:hasHeadGraph ?rh .
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?retraction npa:hasValidSignatureForPublicKey ?pubkey .
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}
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graph ?rh {
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?retraction np:hasAssertion ?ra .
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}
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graph ?ra {
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?somebody npx:retracts ?np .
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}
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}
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}

‎find_valid_signed_nanopubs_with_uri.rq

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#+ summary: Find signed nanopublications that are not retracted or superseded containing the given URI
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#+ method: GET
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#+ pagination: 1000
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#+ endpoint_in_url: False
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prefix np: <http://www.nanopub.org/nschema#>
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prefix npa: <http://purl.org/nanopub/admin/>
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prefix npx: <http://purl.org/nanopub/x/>
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prefix xsd: <http://www.w3.org/2001/XMLSchema#>
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prefix dct: <http://purl.org/dc/terms/>
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select ?np ?graphpred ?subj ?pred ?obj ?date ?pubkey where {
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graph npa:graph {
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?np npa:hasHeadGraph ?h .
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?np npa:creationDay ?__day_iri .
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?np npa:creationMonth ?__month_iri .
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?np npa:creationYear ?__year_iri .
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?np dct:created ?date .
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?np npa:hasValidSignatureForPublicKey ?__pubkey_xsd_string .
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bind(?__pubkey_xsd_string as ?pubkey)
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}
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graph ?h {
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?np ?__graphpred_iri ?g .
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bind(?__graphpred_iri as ?graphpred)
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}
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graph ?g {
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{ ?_ref_iri ?p ?o . bind(?_ref_iri as ?subj) bind(?p as ?pred) bind(?o as ?obj) } union
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{ ?s ?_ref_iri ?o . bind(?s as ?subj) bind(?_ref_iri as ?pred) bind(?o as ?obj) } union
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{ ?s ?p ?_ref_iri . bind(?s as ?subj) bind(?p as ?pred) bind(?_ref_iri as ?obj) }
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}
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filter not exists {
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graph npa:graph {
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?newversion npa:hasHeadGraph ?nh .
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?newversion npa:hasValidSignatureForPublicKey ?pubkey .
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}
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graph ?nh {
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?newversion np:hasPublicationInfo ?ni .
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}
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graph ?ni {
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?newversion npx:supersedes ?np .
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}
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}
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filter not exists {
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graph npa:graph {
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?retraction npa:hasHeadGraph ?rh .
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?retraction npa:hasValidSignatureForPublicKey ?pubkey .
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}
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graph ?rh {
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?retraction np:hasAssertion ?ra .
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}
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graph ?ra {
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?somebody npx:retracts ?np .
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}
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}
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}

‎find_valid_signed_things.rq

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1+
#+ summary: Find things introduced in signed nanopublications that are not retracted or superseded
2+
#+ method: GET
3+
#+ pagination: 1000
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#+ endpoint_in_url: False
5+
6+
prefix np: <http://www.nanopub.org/nschema#>
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prefix npa: <http://purl.org/nanopub/admin/>
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prefix npx: <http://purl.org/nanopub/x/>
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prefix xsd: <http://www.w3.org/2001/XMLSchema#>
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prefix dct: <http://purl.org/dc/terms/>
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select ?thing ?label ?description ?np ?date ?pubkey where {
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graph npa:graph {
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?np npa:hasHeadGraph ?h .
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?np npa:creationDay ?__day_iri .
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?np npa:creationMonth ?__month_iri .
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?np npa:creationYear ?__year_iri .
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?np dct:created ?date .
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?np npa:hasValidSignatureForPublicKey ?__pubkey_xsd_string .
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bind(?__pubkey_xsd_string as ?pubkey)
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}
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graph ?h {
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?np np:hasAssertion ?a .
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?np np:hasPublicationInfo ?i.
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}
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graph ?a {
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?thing a ?_type_iri .
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?thing rdfs:label ?label .
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optional {
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?thing rdfs:comment ?comment .
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}
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optional {
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?thing dct:description ?dctdesc .
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}
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}
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graph ?i {
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?np (npx:introduces|npx:describes) ?thing .
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}
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filter not exists {
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graph npa:graph {
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?newversion npa:hasHeadGraph ?nh .
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?newversion npa:hasValidSignatureForPublicKey ?pubkey .
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}
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graph ?nh {
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?newversion np:hasPublicationInfo ?ni .
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}
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graph ?ni {
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?newversion npx:supersedes ?np .
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}
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}
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filter not exists {
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graph npa:graph {
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?retraction npa:hasHeadGraph ?rh .
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?retraction npa:hasValidSignatureForPublicKey ?pubkey .
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}
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graph ?rh {
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?retraction np:hasAssertion ?ra .
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}
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graph ?ra {
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?somebody npx:retracts ?np .
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}
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}
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bind(coalesce(?comment, ?dctdesc, "") as ?description)
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bind(concat(" ",lcase(str(?label))," ",lcase(str(?description))," ") as ?text)
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filter( contains(?text, lcase(str(?_searchterm))) )
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}

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