README.md

Coexpression and Cosplicing Networks

Code for constructing Coexpression Networks (from gene level RNA-Seq data) and Cosplicing Networks (from exon level expression data)

The order in which the scripts should be run is the following:

1. Gene Coexpression Network Analysis:

   selectNormalizeGeneCounts_CEA_pub.R

   analyzeCoexpr_CEA_pub.R

2. Cosplicing Network Analysis:

   selectNormalizeExonCounts_CEA_pub.R

   analyzeCoSplicEx_CEA_pub.R

NOTE: Place all files available here in the same directory, unzip read counts files, and run the scripts in the order listed above