0.8.2

CHANGELOG:

Fixes in setup.py and pyproject.toml to allow automated uploads to PyPi

0.8.1

CHANGELOG:

Improvements

Added some tests for readers, writers, metadata and datastore modules.
Improvements in H5adReader, LoomReader and ZarrMerge

0.8.0

CHANGELOG:

New features

Pytest based testing
Added circleCI based continuous integration of tests

Improvements

Improved Docstrings (thanks to @razofz)
Added support for grid plotting (thanks to @JohanRodhe)
Fixed issues with wget causing verbose output in vignettes

0.7.8: Minor release

CHANGELOG:

Improvements

DataStore.make_subset() was removed and its functionality ported towriters.ZarrSubset
OSFdownloader was updated to play well with Figshare account and show data sources

0.7.7: Bug fix release

CHANGELOG:

New versions of Dask (2021.04.0 upwards) have some issues that cause memory spikes in Scarf.
Hence, the requirement has been pinned to <=2021.03.01
The issue is being tracked here: dask/dask#7583

0.7.6: Bug fix release

CHANGELOG:

Fixed bugs in DataStore.make_graph() and AnnStream related to external/custom transformers

0.7.5: Minor release

CHANGELOG:

Improvements

DataStore.make_subset() and ZarrMerge() now support transfering filtering information.
Improved make_subset to prevent overwriting files
AnnStream now supports disabling dimension reduction
Fixed cropping of legends in plot_scatter()

New features

Added option to add external data reduction transformers. in DataStore.make_graph()
Added option in DataStore.make_graph() to plot elbow_plots of % variance explained by each component.

0.7.4: Minor release

CHANGELOG:

New features

export_markers_to_csv in DataStore enables exporting marker tables

Improvements

Improved Docstrings (thanks to @razofz)
Improved vignettes (thanks to @JohanRodhe)
Removed stale shared libs for sgtsne.
Added reset_previous parameter to filter_cells in DataStore
Added reset_cell_filter parameter to ZarrMerge. All cell attributes are now copied into merged Zarr file

0.7.3: Minor release

CHANGELOG:

New features

Added new vignettes for multiple modalities. merging datasets and data projection

Improvements

Existing vignettes updated.
Improvements in H5adReader
Fixes in requirements due to jinja3 update that was breaking RTD builds
Fixes in drop in Metadata
Improvements in show_zarr_tree in DataStore that allow printing tree from any node and to any depth
Improvements in plot_layout in DataStore that allow shuffling and sorting of datapoints