panEDTA crashed due to no SINE

[wushyer]

Hi Shujun,

I encountered one error below

panEDTA.sh -g HS.genome.list

'ERROR: Raw LINE results not found in sqzc.fa.mod.EDTA.raw/sqzc.fa.mod.LINE.raw.fa
If you believe the program is working properly, this may be caused by the lack of LINEs in your genome.
ERROR: Initial EDTA failed for sqzc.fa'

It already runs 10 days for 6 genome, this is the 5th one, what do you suggest?
I used the most updated version of v2.2.2.

By the way, is there anyway to restart the panEDTA from the break point?

Best.
Shuangyang

[wushyer]

solved