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Meet erro when using EDTA(singualrity) #531

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dupuquan opened this issue Dec 27, 2024 · 0 comments
Open

Meet erro when using EDTA(singualrity) #531

dupuquan opened this issue Dec 27, 2024 · 0 comments

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@dupuquan
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Sat Dec 21 18:11:33 CST 2024    EDTA_raw: Check dependencies, prepare working directories.

Sat Dec 21 18:11:42 CST 2024    Start to find LTR candidates.

Sat Dec 21 18:11:42 CST 2024    Identify LTR retrotransposon candidates from scratch.

Sun Dec 22 21:50:41 CST 2024    Finish finding LTR candidates.

Sun Dec 22 21:50:41 CST 2024    Start to find TIR candidates.

Sun Dec 22 21:50:41 CST 2024    Identify TIR candidates from scratch.

Species: Maize
dirname: missing operand
Try 'dirname --help' for more information.
Can't open ./TIR-Learner-Result/TIR-Learner_FinalAnn.fa: No such file or directory at /EDTA/util/rename_tirlearner.pl line 19.
Warning: LOC list 11_chr.fa.mod.TIR.ext30.list is empty.

Error: Error while loading sequenceCan't open ./TIR-Learner-Result/TIR-Learner_FinalAnn.gff3: No such file or directory.
Warning: The TIR result file has 0 bp!

HOW to solve this problem is the singularity EDTA missing tools to mask the genome?

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