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problem with tomopy 1.11 #135

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yxqd opened this issue Jan 31, 2022 · 1 comment

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yxqd commented Jan 31, 2022

Tried a fresh install of imars3d (conda-forge channel added)

$ conda create -n imars3d-py38 python=3.8
$ conda install pytest pyyaml numpy scipy matplotlib astropy mpi4py mpich psutil scikit-image tomopy dxchange progressbar2

When running test tests/imars3d/recon/test_mpi.py, got an error

INTEL MKL ERROR: /.../miniconda3/envs/imars3d-py38/lib/python3.8/site-packages/mkl_fft/../../../libmkl_core.so.1: invalid ELF header.
Intel MKL FATAL ERROR: Cannot load libmkl_core.so.1.

when tomopy 1.11 is used.

mkl versions installed:

# Name                    Version                   Build  Channel
mkl                       2021.4.0           h06a4308_640  
mkl_fft                   1.3.1            py38h8666266_1    conda-forge

Workaround: installed tomopy 1.10.1

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Member Author

yxqd commented Jan 31, 2022 •

edited

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It could be related to the mkl conda package? The one installed with tomopy 1.10.1 is 2020.4. The one installed with tomopy 1.11 is 2021.4.

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