VarFish

All

35 repositories

mehari
Public
VEP-like tool for sequence ontology and HGVS annotation of VCF files
genetics vcf variant-filtration varfish variant-prioritization
Rust
•
MIT License
•1•20•30•2•Updated May 26, 2025May 26, 2025
annonars
Public
Genome annotation based on Rust and RocksDB
genetics vcf variant-filtration varfish variant-prioritization
Rust
•
Apache License 2.0
•0•7•19•0•Updated May 26, 2025May 26, 2025
varfish-server
Public
VarFish: comprehensive DNA variant analysis for diagnostics and research
genetics vcf variant-filtration varfish variant-prioritization
Python
•
MIT License
•10•47•175•15•Updated May 26, 2025May 26, 2025
annonars-data-clinvar
Public
Clinvar data builds for annonars
genetics vcf variant-filtration varfish variant-prioritization
HCL
•
MIT License
•0•1•0•0•Updated May 26, 2025May 26, 2025
clinvar-this
Public
ClinVar Submission API Made Easy
api bioinformatics variants ncbi clinvar
Python
•
MIT License
•2•10•17•5•Updated May 26, 2025May 26, 2025
clinvar-data-jsonl
Public
Weekly ClinVar releases as JSONL with additonal useful files
MIT License
•0•1•0•0•Updated May 26, 2025May 26, 2025
hgvs-rs
Public
A port of biocommons/hgvs to the Rust programming language
genetics vcf variant-filtration varfish variant-prioritization
Rust
•
Apache License 2.0
•5•13•14•2•Updated May 19, 2025May 19, 2025
varfish-db-downloader
Public
Download public databases for VarFish
genetics vcf variant-filtration varfish variant-prioritization
Python
•
MIT License
•2•4•3•3•Updated May 16, 2025May 16, 2025
varfish-server-worker
Public
Rust-based background worker for varfish-server
genetics vcf variant-filtration varfish variant-prioritization
Rust
•
MIT License
•1•2•2•5•Updated Apr 28, 2025Apr 28, 2025
rocksdb-utils-lookup
Public
Utilities for using RocksDB as read-only lookup table (after initial bulk import)
genetics vcf variant-filtration varfish variant-prioritization
Rust
•
Apache License 2.0
•0•0•1•1•Updated Apr 16, 2025Apr 16, 2025
mehari-data-tx
Public
Transcript data builds for mehari
Python
•
MIT License
•0•2•0•0•Updated Apr 14, 2025Apr 14, 2025
cada-prio
Public
Re-implementation of the CADA phenotype-based prioritization algorithm
genetics vcf variant-filtration varfish variant-prioritization
Python
•
MIT License
•0•0•1•0•Updated Apr 14, 2025Apr 14, 2025
viguno
Public
Versatile Interface for Genetics Utilization of Nice Ontologies
genetics vcf variant-filtration varfish variant-prioritization
Rust
•
Apache License 2.0
•0•0•2•5•Updated Mar 11, 2025Mar 11, 2025
seqrepo-rs
Public
A port of biocommons/seqrepo to the Rust programming language
genetics vcf variant-filtration varfish variant-prioritization
Rust
•
Apache License 2.0
•1•4•0•4•Updated Feb 4, 2025Feb 4, 2025
varfish-docker-compose
Public
(Next-generation; in-development) VarFish Docker Compose
genetics vcf variant-filtration varfish variant-prioritization
Shell
•
MIT License
•0•0•6•2•Updated Feb 3, 2025Feb 3, 2025
varfish-cli
Public
VarFish REST API client (CLI + Python package)
genetics vcf variant-filtration varfish variant-prioritization
Python
•
MIT License
•2•2•8•5•Updated Jan 24, 2025Jan 24, 2025
cadd-rest-api
Public
Simple REST API wrapper for CADD-scripts
genetics vcf variant-filtration varfish variant-prioritization
Python
•
MIT License
•0•1•1•1•Updated Dec 3, 2024Dec 3, 2024
varfish-dev-docs
Public
VarFish software development documentation
genetics vcf variant-filtration varfish variant-prioritization
Makefile
•
MIT License
•0•0•0•2•Updated Oct 31, 2024Oct 31, 2024
varfish-installer
Public
Script and Docker container for VarFish installation and data download
genetics vcf variant-filtration varfish variant-prioritization
Python
•
MIT License
•0•0•0•2•Updated Jul 22, 2024Jul 22, 2024
scarus
Public
Automated evaluation of ACMG rules
genetics vcf variant-filtration varfish variant-prioritization
Rust
•
Apache License 2.0
•0•0•6•6•Updated Jun 3, 2024Jun 3, 2024
varfish-landing-page
Public
Astro
•
MIT License
•1•1•5•1•Updated May 28, 2024May 28, 2024
cadd-rest-api-mock
Public
Mocking the CADD REST API server for VarFish development
genetics vcf variant-filtration varfish variant-prioritization
Python
•
MIT License
•0•0•0•0•Updated Jan 30, 2024Jan 30, 2024
varfish-org.github.io
Public
GitHub pages website
HTML
•0•0•0•0•Updated Jan 25, 2024Jan 25, 2024
varfish-docker-compose-legacy
Public
Setup VarFish as using Docker Compose
genetics vcf variant-filtration varfish variant-prioritization
Makefile
•
MIT License
•2•5•1•0•Updated Jan 24, 2024Jan 24, 2024
varfish-data-igsr
Public
Repository for building IGSR data sets for use in VarFish
genetics vcf variant-filtration varfish variant-prioritization
Python
•
MIT License
•0•0•0•0•Updated Jan 24, 2024Jan 24, 2024
biocommons-bioutils-rs
Public
(Partial) port of biocommons/bioutils to Rust
genetics vcf variant-filtration varfish variant-prioritization
Rust
•
Apache License 2.0
•0•0•0•0•Updated Jan 24, 2024Jan 24, 2024
varfish-anno
Public archive
DEPRECATED Convert annotation database files to Var:fish: import format
genetics vcf variant-filtration varfish variant-prioritization
Makefile
•0•1•1•0•Updated Jan 24, 2024Jan 24, 2024
varfish-installer-LEGACY
Public archive
DEPRECATED, use https://github.com/bihealth/varfish-docker-compose instead
genetics vcf variant-filtration varfish variant-prioritization
Makefile
•
MIT License
•0•1•1•0•Updated Jan 24, 2024Jan 24, 2024
varfish-annotator
Public archive
(Legacy) Annotate variants for import into VarFish server.
genetics vcf variant-filtration varfish variant-prioritization
Java
•
MIT License
•2•6•6•1•Updated Jan 23, 2024Jan 23, 2024
.github
Public
0•0•0•0•Updated Jan 23, 2024Jan 23, 2024