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    • htslib

      Public
      C library for high-throughput sequencing data formats
      C
      Other
      44382913926Updated Feb 14, 2025Feb 14, 2025
    • samtools

      Public
      Tools (written in C using htslib) for manipulating next-generation sequencing data
      C
      Other
      5821.7k17117Updated Feb 13, 2025Feb 13, 2025
    • bcftools

      Public
      This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html
      C
      Other
      24270331812Updated Jan 29, 2025Jan 29, 2025
    • htscodecs

      Public
      Custom compression for CRAM and others.
      C
      Other
      193100Updated Dec 12, 2024Dec 12, 2024
    • HTSlib crypt4gh plug-in
      C
      Other
      2310Updated Sep 22, 2023Sep 22, 2023
    • klib

      Public
      A standalone and lightweight C library
      C
      MIT License
      563000Updated Jan 17, 2023Jan 17, 2023
    • tabix

      Public archive
      Note: tabix and bgzip binaries are now part of the HTSlib project.
      C
      409152Updated Aug 3, 2021Aug 3, 2021
    • Plugins for use with HTSlib
      C
      Other
      7930Updated Mar 19, 2021Mar 19, 2021
    • sapi

      Public
      Sequence Alignment Programming Interface
      C
      0700Updated Mar 9, 2012Mar 9, 2012