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@reichlab The Reich Lab at UMass-Amherst

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    137 repositories

    • reichlab.github.io

      Public
      The website for the Reich Lab @ UMass-Amherst.
      HTML
      •
      Apache License 2.0
      •46•18•11•1•Updated May 31, 2025May 31, 2025

    • flusight-dashboard

      Public
      Dashboard for CDC's FluSight prediction exercise.
      Creative Commons Zero v1.0 Universal
      •4•1•0•0•Updated May 29, 2025May 29, 2025

    • flusight-dashboard-staging

      Public
      Staging version of flusight-dashboard -- used to demo updates
      Creative Commons Zero v1.0 Universal
      •4•0•0•0•Updated May 29, 2025May 29, 2025

    • covidhub-dashboard

      Public
      Dashboard for the CDC's COVID-19 Forecast Hub
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated May 29, 2025May 29, 2025

    • metrocast-dashboard

      Public
      Dashboard website for the epiENGAGE Flu Metrocast Hub.
      Creative Commons Zero v1.0 Universal
      •1•0•0•0•Updated May 29, 2025May 29, 2025

    • flu-metrocast

      Public
      Short-term forecasts for influenza at the city- and county-level
      R
      •
      MIT License
      •4•3•3•1•Updated May 29, 2025May 29, 2025

    • variant-nowcast-hub-dashboard

      Public
      Dashboard pages and analyses for the US SARS-CoV-2 Variant Nowcast Hub
      HTML
      •
      Creative Commons Zero v1.0 Universal
      •0•0•4•0•Updated May 29, 2025May 29, 2025

    • variant-nowcast-hub

      Public
      A repository to store COVID-19 variant nowcasts collected as a modeling hub.
      R
      •
      MIT License
      •13•17•8•1•Updated May 29, 2025May 29, 2025

    • FluSight-forecast-hub

      Public
      FluSight-forecast-hub fork for cloud onboarding
      R
      •
      MIT License
      •80•0•0•0•Updated May 28, 2025May 28, 2025

    • cdcgov-covid19-forecast-hub

      Public
      A repository run by the US CDC to collect forecasts of weekly incident COVID-19 hospital admissions.
      R
      •
      Apache License 2.0
      •21•0•0•0•Updated May 28, 2025May 28, 2025

    • predictability

      Public
      MIT License
      •0•0•0•0•Updated May 27, 2025May 27, 2025

    • reporule

      Public
      CLI for standardizing repo rulesets for a GitHub org or user
      Python
      •
      MIT License
      •0•2•0•1•Updated May 26, 2025May 26, 2025

    • cladetime

      Public
      Python interface for accessing Nextstrain SARS-CoV-2 sequence and clade data
      Python
      •
      MIT License
      •2•7•5•2•Updated May 26, 2025May 26, 2025

    • predtimechart

      Public
      JavaScript
      •
      MIT License
      •1•1•27•0•Updated May 21, 2025May 21, 2025

    • variant-nowcast-model-dev-retro

      Public
      Retrospective model dev for UMass models for variant-nowcast-hub
      R
      •
      MIT License
      •0•2•3•2•Updated May 21, 2025May 21, 2025

    • reichlab-utils

      Public archive
      Script to standardize permissions and branch settings for Reichlab repos
      Python
      •
      MIT License
      •0•0•0•0•Updated May 1, 2025May 1, 2025

    • iddata

      Public
      Python module for accessing infectious disease data
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 29, 2025Apr 29, 2025

    • decisions

      Public
      A public record of decisions made for lab projects
      HTML
      •
      The Unlicense
      •0•1•1•0•Updated Apr 23, 2025Apr 23, 2025

    • get-covid-clade-counts

      Public
      Create virus clade count data and save to an S3 Bucket using functionality from virus-clade-utils
      Python
      •
      MIT License
      •0•0•5•1•Updated Apr 14, 2025Apr 14, 2025

    • reichlab-python-template

      Public archive
      A skeleton Python setup for new projects
      Python
      •
      MIT License
      •0•1•0•0•Updated Apr 9, 2025Apr 9, 2025

    • forecast-repository

      Public
      Codebase for Zoltar forecast repository
      Python
      •
      GNU General Public License v3.0
      •3•6•41•3•Updated Apr 8, 2025Apr 8, 2025

    • excessmort

      Public
      R package for estimating excess deaths from daily count data
      R
      •4•0•0•0•Updated Apr 7, 2025Apr 7, 2025

    • deficit-hospitalization

      Public
      MIT License
      •0•0•0•0•Updated Apr 1, 2025Apr 1, 2025

    • zoltr

      Public
      R
      •
      GNU General Public License v3.0
      •4•2•10•1•Updated Mar 6, 2025Mar 6, 2025

    • jacques

      Public
      Just Another Conditional Quantile Estimator
      Jupyter Notebook
      •
      MIT License
      •1•0•3•1•Updated Feb 27, 2025Feb 27, 2025

    • trendsEnsemble

      Public
      R package for running the UMass-trends_ensemble, a model that predicts incident influenza and COVID-19 hospitalizations
      R
      •
      GNU General Public License v3.0
      •0•0•5•0•Updated Feb 20, 2025Feb 20, 2025

    • operational-models

      Public
      Repository for automating runs of operational disease forecasting models.
      R
      •
      MIT License
      •0•0•2•0•Updated Feb 20, 2025Feb 20, 2025

    • container-utils

      Public
      Utility scripts for containerized apps.
      Shell
      •0•0•0•0•Updated Feb 20, 2025Feb 20, 2025

    • sarimaTD

      Public
      sarimaTD R package: SARIMA Models with Transformations and Seasonal Differencing
      R
      •2•2•4•0•Updated Feb 6, 2025Feb 6, 2025

    • jacques-flu

      Public
      Using jacques method to forecast flu cases
      Jupyter Notebook
      •
      MIT License
      •0•0•2•0•Updated Jan 31, 2025Jan 31, 2025