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@nimh-dsst National Institute of Mental Health Data Science & Sharing Team

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    47 repositories

    • fast-fmm-rpy2

      Public
      Python wrapper for the R fastFMM package
      HTML
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Mar 26, 2025Mar 26, 2025

    • abcd-fasttrack2bids

      Public
      Python
      •2•0•16•0•Updated Mar 26, 2025Mar 26, 2025

    • ArchiveFlow

      Public
      Python package to parse LabArchive notebooks to create and monitor data sources
      Python
      •
      GNU General Public License v3.0
      •0•0•1•0•Updated Mar 25, 2025Mar 25, 2025

    • dsst-rtd

      Public
      DSST's readthedocs site repo.
      0•0•0•0•Updated Mar 7, 2025Mar 7, 2025

    • lunch-and-learn

      Public
      Code that is shared during lunch and learn sessions
      Python
      •0•0•4•0•Updated Mar 7, 2025Mar 7, 2025

    • DSST-ZarrNii

      Public
      Code for interconversion between Zarr and Nii
      Creative Commons Zero v1.0 Universal
      •0•0•1•0•Updated Mar 7, 2025Mar 7, 2025

    • cmn-website

      Public
      HTML
      •3•0•0•0•Updated Mar 5, 2025Mar 5, 2025

    • Pub-Data-Parser

      Public
      Creative Commons Zero v1.0 Universal
      •0•0•1•0•Updated Feb 21, 2025Feb 21, 2025

    • utils

      Public
      A repository containing code that is meant to demonstrate common DSST tasks
      Python
      •0•0•0•0•Updated Feb 14, 2025Feb 14, 2025

    • photometry_analysis

      Public
      Streamlined analysis of fiber photometry code in a python package
      Creative Commons Zero v1.0 Universal
      •0•0•1•0•Updated Feb 14, 2025Feb 14, 2025

    • dsst-etl

      Public
      importing leo's code to get around LFS restriction on forks
      Python
      •
      Creative Commons Zero v1.0 Universal
      •1•0•3•1•Updated Feb 13, 2025Feb 13, 2025

    • uv

      Public
      An extremely fast Python package and project manager, written in Rust.
      Rust
      •
      Apache License 2.0
      •1.3k•0•0•0•Updated Feb 4, 2025Feb 4, 2025

    • dataSci_job_ad_2024

      Public
      TeX
      •0•1•0•0•Updated Dec 17, 2024Dec 17, 2024

    • nda-bids-upload

      Public
      For uploading BIDS data to the NDA.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•2•1•Updated Dec 17, 2024Dec 17, 2024

    • file-mapper

      Public
      An easy tool to copy/move/symlink files from one directory to the other!
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •5•0•0•0•Updated Dec 10, 2024Dec 10, 2024

    • Git-Skits

      Public
      Code with video demos of common data science tools used at the NIMH
      Jupyter Notebook
      •
      Apache License 2.0
      •0•0•0•0•Updated Nov 25, 2024Nov 25, 2024

    • osm

      Public
      OpenSciMetrics (OSM) applies NLP and LLM-based metrics and indicators related to transparency, data sharing, rigor, and open science on biomedical publications.
      Python
      •
      Creative Commons Zero v1.0 Universal
      •3•1•9•3•Updated Nov 13, 2024Nov 13, 2024

    • Brain-Atlas-Checker

      Public
      A collection of scripts that checks the masks generated by aligning images to the Allen Brain Atlas
      Python
      •
      GNU General Public License v3.0
      •0•0•1•0•Updated Oct 30, 2024Oct 30, 2024

    • nimh-dsst.github.io

      Public
      Redirect for the NIMH IRP Data Science and Sharing Team
      HTML
      •1•0•0•0•Updated Sep 19, 2024Sep 19, 2024

    • dsst-defacing-pipeline

      Public
      Defacing algorithm to improve and evaluate accuracy for large datasets.
      Python
      •2•3•16•2•Updated Sep 11, 2024Sep 11, 2024

    • osm-rtrans-etl

      Public
      Extract, Transform, and load data associated with the rtransparent publication into a MongoDB database
      Dockerfile
      •0•0•0•0•Updated Jul 28, 2024Jul 28, 2024

    • nda-study-1887

      Public
      Scripts and data files used to convert anatomical MRI dicom data of the Autism Subtypes study to BIDS format, and to upload the dataset to NIMH Data Archive
      Python
      •0•0•0•0•Updated Jun 12, 2024Jun 12, 2024

    • bids-validator-comparator

      Public
      A small set of scripts to BIDS-validate and compare validator version outputs for OpenNeuro datasets.
      Python
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated May 14, 2024May 14, 2024

    • sharestats-leo-bsc

      Public
      Jupyter Notebook
      •1•0•0•0•Updated May 8, 2024May 8, 2024

    • OpenCogData

      Public
      Collection of publicly available cognitive task datasets
      cognitive-sciencecomputational-psychiatryopen-datasetscognitive-neuroscience
      JavaScript
      •
      MIT License
      •2•8•0•2•Updated Apr 17, 2024Apr 17, 2024

    • Irritability-ADHD-symptoms-and-inhibitory-control-in-the-ABCD-Study

      Public
      Analysis code and meta-data for manuscript on irritability, ADHD symptoms, and inhibitory control in ABCD Study
      R
      •
      Creative Commons Zero v1.0 Universal
      •2•0•0•0•Updated Mar 17, 2024Mar 17, 2024

    • DTI-Phenotyping

      Public
      Scripts used to curate and analyze the DTI-Phenotyping dataset.
      R
      •
      Creative Commons Zero v1.0 Universal
      •1•0•0•0•Updated Mar 16, 2024Mar 16, 2024

    • dataSci_job_ad

      Public
      Open Data Scientist Job Ad
      2•0•0•0•Updated Jan 25, 2024Jan 25, 2024

    • ohbm2024tables

      Public
      Holds a nice PDF version of HCP and PNC tables used in this OHBM 2024 abstract's analysis.
      TeX
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Dec 1, 2023Dec 1, 2023

    • opendata_gpt

      Public
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Nov 29, 2023Nov 29, 2023