Repositories list

• Kleborate

  Public
  Python

  •

  GNU General Public License v3.0

  •49•125•25•3•Updated Jun 1, 2025Jun 1, 2025

• Klebsiella-genome-metadata

  Public
  Klebsiella genome metadata collection schema plus guidance, examples and collection template

  GNU General Public License v3.0

  •0•4•0•0•Updated May 22, 2025May 22, 2025

• Kaptive

  Public
  Python

  •

  GNU General Public License v3.0

  •24•47•0•0•Updated Apr 30, 2025Apr 30, 2025

• KlebNET-Metadata-Repository-Database

  Public
  0•0•0•0•Updated Apr 16, 2025Apr 16, 2025

• KlebRef

  Public
  A genomic resource of Klebsiella reference strains from ATCC, NCTC, BEI Resources MRSN Diversity Panel and KlebPhaCol.

  HTML

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Mar 26, 2025Mar 26, 2025

• protocols

  Public
  Protocols for Klebsiella genomic surveillance - including detection, isolation, DNA extraction, library preparation, sequence data processing and bioinformatics.

  GNU General Public License v3.0

  •0•1•0•0•Updated Mar 18, 2025Mar 18, 2025

• transmission_estimator

  Public
  R

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Feb 10, 2025Feb 10, 2025

• KleborateR

  Public
  R scripts for Kleborate and Kaptive analysis

  R

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Nov 15, 2024Nov 15, 2024

• .github

  Public
  1•0•0•0•Updated Nov 7, 2024Nov 7, 2024

• Kaptive-Web

  Public
  Kaptive web interface

  Python

  •

  Other

  •3•8•3•0•Updated Nov 5, 2024Nov 5, 2024

• KleborateModular

  Public
  A modular rewrite of Kleborate

  Python

  •

  GNU General Public License v3.0

  •2•6•0•0•Updated Sep 3, 2024Sep 3, 2024

• KlebsGenomes3

  Public
  0•0•0•0•Updated Mar 30, 2023Mar 30, 2023

• kleborate_workshop_data

  Public
  0•0•0•0•Updated Oct 26, 2022Oct 26, 2022

• Kleborate-viz

  Public
  Visualisation application for Klebsiella genotypes generated by Kleborate.

  genotypingklebsiellavisualisation

  R

  •2•9•1•0•Updated Mar 8, 2021Mar 8, 2021