InstaDeep Ltd

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75 repositories

nucleotide-transformer
Public
Foundation Models for Genomics & Transcriptomics
deep-learning genomics biology dna transformer transcriptomics foundation-models
Jupyter Notebook
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Other
•85•796•9•0•Updated Dec 27, 2025Dec 27, 2025
skypilot
Public
Run, manage, and scale AI workloads on any AI infrastructure. Use one system to access & manage all AI compute (Kubernetes, 20+ clouds, or on-prem).
Python
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Apache License 2.0
•896•0•0•1•Updated Dec 23, 2025Dec 23, 2025
Mava
Public
🦁 A research-friendly codebase for fast experimentation of multi-agent reinforcement learning in JAX
research reinforcement-learning multiagent multi-agent-systems jax multi-agent-reinforcement-learning marl
Python
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Apache License 2.0
•118•870•24•5•Updated Dec 15, 2025Dec 15, 2025
InstaNovo
Public
De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments
Python
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Apache License 2.0
•25•109•8•3•Updated Dec 15, 2025Dec 15, 2025
mlip
Public
Library for efficient training and application of Machine Learning Interatomic Potentials (MLIP)
Python
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Apache License 2.0
•11•76•2•0•Updated Dec 12, 2025Dec 12, 2025
mlipaudit
Public
Benchmarking and validation of Machine Learning Interatomic Potentials (MLIP)
Python
•0•12•0•0•Updated Dec 8, 2025Dec 8, 2025
winnow
Public
Confidence control and FDR estimation for de novo peptide sequencing
Python
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Apache License 2.0
•1•7•17•3•Updated Dec 8, 2025Dec 8, 2025
Remote-Storage-MCP
Public
Repo to host a model context protocol for file uploading and downloading up and from filebin.net
Python
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Apache License 2.0
•0•0•0•0•Updated Dec 5, 2025Dec 5, 2025
rl-inference-strategies
Public
Code for the paper (Neurips 25 Oral) "Breaking the Performance Ceiling in Reinforcement Learning requires Inference Strategies"
Python
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Apache License 2.0
•0•0•0•0•Updated Dec 4, 2025Dec 4, 2025
jumanji
Public
🕹️ A diverse suite of scalable reinforcement learning environments in JAX
python research reinforcement-learning jax
Python
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Apache License 2.0
•94•792•28•2•Updated Dec 1, 2025Dec 1, 2025
InstaGeo-E2E-Geospatial-ML
Public
A python package for end-to-end geospatial machine learning using multispectral earth observation data such as NASA HLS and ESA Sentinel-2.
deep-learning geospatial remote-sensing
Python
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Other
•40•77•2•0•Updated Nov 28, 2025Nov 28, 2025
tcr-dataset-size-estimation
Public
Jupyter Notebook
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GNU General Public License v3.0
•1•1•0•0•Updated Nov 27, 2025Nov 27, 2025
GeoGraph
Public
Python
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Apache License 2.0
•0•1•0•0•Updated Nov 20, 2025Nov 20, 2025
aichor-demo
Public
Collection of smoke test with any operator, for AIchor platform
Python
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MIT License
•37•1•0•2•Updated Nov 19, 2025Nov 19, 2025
database_search_scaling
Public
Python
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Apache License 2.0
•0•0•0•0•Updated Nov 14, 2025Nov 14, 2025
FoldConfBench
Public
GitHub repository for the code release of the paper "Exploring the Conformational Landscape of Adenylate Kinase and Beyond: A Benchmark of Protein Folding Models"
Python
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Apache License 2.0
•0•2•0•0•Updated Nov 4, 2025Nov 4, 2025
og-marl
Public
Datasets with baselines for Offline MARL.
reinforcement-learning multi-agent-reinforcement-learning offline-reinforcement-learning
Python
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Apache License 2.0
•14•195•6•0•Updated Nov 2, 2025Nov 2, 2025
OPEN_BAYES_PD
Public
Jupyter Notebook
•0•1•0•0•Updated Oct 28, 2025Oct 28, 2025
DEgym
Public
A LLM-friendly framework for translating dynamical equations to gymnasium-compatible RL environments.
biological-simulations chemical-engineering reinforcement-learning-environments llm-friendly
Python
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Apache License 2.0
•3•33•0•0•Updated Oct 16, 2025Oct 16, 2025
flashbax
Public
⚡ Flashbax: Accelerated Replay Buffers in JAX
machine-learning reinforcement-learning hpc buffers rl jax off-policy
Python
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Apache License 2.0
•21•268•8•2•Updated Sep 22, 2025Sep 22, 2025
multiomics-open-research
Public
BulkRNABert and MOJO
Python
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Other
•9•31•6•0•Updated Jul 10, 2025Jul 10, 2025
aichor-demo-onprem
Public
Collection of smoke test with any operator, for AIchor platform
Python
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MIT License
•37•0•0•0•Updated Jun 26, 2025Jun 26, 2025
protein-structure-tokenizer
Public
Official implementation of "Learning the language of protein structures"
Python
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Apache License 2.0
•5•41•1•1•Updated Jun 20, 2025Jun 20, 2025
AbBFN2
Public
AbBFN2: A flexible antibody foundation model based on Bayesian Flow Networks
Python
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Apache License 2.0
•5•37•1•0•Updated Jun 4, 2025Jun 4, 2025
xla
Public
A machine learning compiler for GPUs, CPUs, and ML accelerators
C++
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Apache License 2.0
•721•0•0•0•Updated Apr 30, 2025Apr 30, 2025
jax
Public
Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more
Python
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Apache License 2.0
•3.3k•0•0•0•Updated Apr 29, 2025Apr 29, 2025
aichor-demo-kubecon25
Public
Collection of smoke test with any operator, for AIchor platform
Python
•37•0•0•0•Updated Mar 31, 2025Mar 31, 2025
aichor-azure-demo
Public
Collection of smoke test with any operator, for AIchor platform
Python
•37•0•0•0•Updated Mar 28, 2025Mar 28, 2025
protein-sequence-bfn
Public
Supporting code for our paper "Protein Sequence Modelling with Bayesian Flow Networks"
protein-sequence bayesian-flow-networks bfns
Python
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Other
•3•48•1•0•Updated Mar 3, 2025Mar 3, 2025
aichor-demo-db
Public
Collection of smoke test with any operator, for AIchor platform
Python
•37•0•0•0•Updated Feb 27, 2025Feb 27, 2025