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    216 repositories

    • neurorse-workshops

      Public
      Built workshop materials for the NeuroRSE packages
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Nov 13, 2025Nov 13, 2025

    • ccn-software-sfn-2025

      Public
      Materials for CCN software workshop at SfN, Nov 2025
      Python
      •
      MIT License
      •0•0•0•0•Updated Nov 13, 2025Nov 13, 2025

    • neurosift

      Public
      Browser-based NWB visualization and DANDI exploration
      pypilivenwbneurosiftdandi
      TypeScript
      •
      Apache License 2.0
      •13•60•45•2•Updated Nov 13, 2025Nov 13, 2025

    • figpack

      Public
      A Python package for creating shareable, interactive, browser-based visualizations
      pypilivefigpack
      TypeScript
      •
      Apache License 2.0
      •0•11•3•0•Updated Nov 13, 2025Nov 13, 2025

    • neuroRSE

      Public
      Website for CCN's neuroRSE group
      CSS
      •
      MIT License
      •0•1•0•0•Updated Nov 12, 2025Nov 12, 2025

    • sciware

      Public
      Learning materials for scientific software development
      learningscienceeducationsoftware-development
      HTML
      •38•91•2•0•Updated Nov 12, 2025Nov 12, 2025

    • walnuts

      Public
      Within-orbit Adaptive Leapfrog No-U-Turn Sampler
      samplingstanmcmchmc
      C++
      •
      MIT License
      •1•22•14•3•Updated Nov 12, 2025Nov 12, 2025

    • nemos

      Public
      NEural MOdelS, a statistical modeling framework for neuroscience.
      Python
      •
      MIT License
      •13•110•127•2•Updated Nov 12, 2025Nov 12, 2025

    • CaImAn

      Public
      Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
      calcium-imagingmotion-correctionsource-extractiondeconvolution2-photoncnmf
      Python
      •
      GNU General Public License v2.0
      •390•698•78•13•Updated Nov 11, 2025Nov 11, 2025

    • aLENS_analysis

      Public
      Postprocessing & analysis scripts for aLENS data
      Jupyter Notebook
      •
      Other
      •2•0•0•0•Updated Nov 11, 2025Nov 11, 2025

    • capture_lock

      Public
      Modular Visual-Odometry research platform built on COLMAP for testing our algebraic solvers (e.g., DRaM-LHM, ICCV 2025) in multiview geometry.
      slampnppose-estimation
      C++
      •0•5•0•0•Updated Nov 10, 2025Nov 10, 2025

    • nixpack

      Public
      nix+spack = nixpack (spanix?)
      Nix
      •
      MIT License
      •5•48•1•4•Updated Nov 10, 2025Nov 10, 2025

    • finufft

      Public
      Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3
      C++
      •
      Other
      •94•380•48•7•Updated Nov 6, 2025Nov 6, 2025

    • disBatch

      Public
      Dynamic dispatch of a list of command-line tasks, locally or on a cluster. Supports retrying failed tasks, and adding/removing compute resources on-the-fly.
      distributed-computingbatch-processing
      Python
      •
      Apache License 2.0
      •9•46•7•0•Updated Nov 6, 2025Nov 6, 2025

    • simple_ans

      Public
      Simple ANS (Asymmetric Numeral Systems) implementation in Python/C++
      compressionpypi
      Python
      •
      Apache License 2.0
      •4•4•0•2•Updated Nov 6, 2025Nov 6, 2025

    • jax-finufft

      Public
      JAX bindings to the Flatiron Institute Non-uniform Fast Fourier Transform (FINUFFT) library
      Python
      •
      Apache License 2.0
      •7•105•8•2•Updated Nov 5, 2025Nov 5, 2025

    • ManifoldEM

      Public
      Python package for determination of conformational continua of macromolecules from single-particle cryo-EM data
      Python
      •
      GNU General Public License v3.0
      •2•14•5•0•Updated Nov 5, 2025Nov 5, 2025

    • stan-playground

      Public
      Run Stan models in the browser
      wasmlivestanstan-playground
      TypeScript
      •
      Apache License 2.0
      •1•51•11•1•Updated Nov 5, 2025Nov 5, 2025

    • cryojax-ensemble-optimization

      Public
      Python
      •
      MIT License
      •0•1•7•1•Updated Nov 5, 2025Nov 5, 2025

    • cppdlr

      Public
      Discrete Lehmann representation of imaginary time Green's functions
      C++
      •
      Apache License 2.0
      •6•12•1•0•Updated Nov 4, 2025Nov 4, 2025

    • RocketSHP

      Public
      Fast structural heterogeneity estimation
      Jupyter Notebook
      •
      MIT License
      •1•12•0•0•Updated Nov 4, 2025Nov 4, 2025

    • nifty-ls

      Public
      A fast Lomb-Scargle periodogram. It's nifty, and uses a NUFFT!
      time-serieslomb-scargle-periodogramspectral-analysis
      Python
      •
      Apache License 2.0
      •5•44•4•0•Updated Nov 3, 2025Nov 3, 2025

    • scc-vscode-jupyterhub

      Public
      VS Code server launcher for FI JupyterHub
      HTML
      •
      Apache License 2.0
      •0•1•0•0•Updated Oct 29, 2025Oct 29, 2025

    • c2py

      Public
      Clair/c2py low level library
      C++
      •
      Apache License 2.0
      •1•1•0•0•Updated Oct 29, 2025Oct 29, 2025

    • astore_natcomms_2025_scripts

      Public
      Assorted scripts for analysing TRPV1 trajectories from Astore et al. 2025
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 27, 2025Oct 27, 2025

    • spack-packages

      Public
      Spack's community package recipes
      Python
      •
      Apache License 2.0
      •438•0•0•0•Updated Oct 26, 2025Oct 26, 2025

    • spack

      Public
      A flexible package manager that supports multiple versions, configurations, platforms, and compilers.
      Python
      •
      Other
      •2.4k•2•0•14•Updated Oct 24, 2025Oct 24, 2025

    • sparse_dot

      Public
      Python wrapper for Intel Math Kernel Library (MKL) matrix multiplication
      pythonnumpymatrix-multiplicationsparsescipysparse-matrixmkl
      Python
      •
      MIT License
      •11•91•3•0•Updated Oct 23, 2025Oct 23, 2025

    • cephdu

      Public
      A ncdu-like TUI for the Ceph File System, using xattrs instead of crawling
      cephdisk-usagencdu
      Rust
      •
      MIT License
      •0•2•15•0•Updated Oct 22, 2025Oct 22, 2025

    • dmk

      Public
      A Dual-space Multilevel Kernel-splitting (DMK) Framework for Discrete and Continuous Convolution
      C++
      •4•14•12•1•Updated Oct 22, 2025Oct 22, 2025