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    16 repositories

    • OSPREY3

      Public
      Open Source Protein REdesign for You v3
      Java
      •
      GNU General Public License v2.0
      •15•47•35•0•Updated Dec 5, 2024Dec 5, 2024

    • resistor

      Public
      Computational Resistance Mutation Prediction using K*, mutational signatures, and Pareto optimization
      Julia
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 11, 2022Jan 11, 2022

    • osprey-gui

      Public
      A cross-platform GUI for OSPREY 3
      Kotlin
      •
      GNU General Public License v2.0
      •0•0•11•0•Updated Mar 11, 2021Mar 11, 2021

    • markstar_benchmarks

      Public
      Python
      •1•0•1•0•Updated Feb 16, 2021Feb 16, 2021

    • osprey-service

      Public
      A web service to support the Osprey GUI
      Batchfile
      •
      GNU General Public License v2.0
      •0•0•0•0•Updated Feb 4, 2021Feb 4, 2021

    • molscope

      Public
      A flexible and attractive molecular viewer for JVM applications.
      Kotlin
      •
      GNU General Public License v2.0
      •0•0•0•0•Updated Feb 4, 2021Feb 4, 2021

    • ProteinDesignPlugin

      Public
      Python
      •2•4•0•0•Updated Nov 2, 2020Nov 2, 2020

    • cdio

      Public
      Java
      •0•0•0•0•Updated Apr 20, 2020Apr 20, 2020

    • protein-interaction-viewer

      Public
      Show probe contact dots within PyMol
      Python
      •
      Other
      •3•5•0•1•Updated Apr 3, 2020Apr 3, 2020

    • libprotnmr

      Public
      Java
      •
      GNU General Public License v2.0
      •0•1•0•0•Updated Feb 29, 2020Feb 29, 2020

    • jpype-py2

      Public
      A Python-Java bridge focusing on stability for Python 2.7
      C++
      •
      Apache License 2.0
      •0•1•0•0•Updated May 9, 2018May 9, 2018

    • OSPREY_3_paper

      Public
      Paper about OSPREY 3
      TeX
      •0•1•0•0•Updated Apr 23, 2018Apr 23, 2018

    • BWM

      Public
      This repository contains code from the following publication: Jou JD, Jain S, Georgiev I, Donald BR. BWM*: A novel, provable ensemble- based dynamic programming algorithm for sparse approximations of computational protein design. J Comput Biol. 2016. For the latest version of OSPREY, please try http://www.cs.duke.edu/donaldlab/osprey.php instead.
      Java
      •
      Other
      •0•1•0•0•Updated Apr 5, 2018Apr 5, 2018

    • TPIE-Java

      Public
      glue code to use TPIE in Java projects
      Java
      •
      Other
      •0•1•0•0•Updated Jun 20, 2017Jun 20, 2017

    • OSPREY_SparseAStar

      Public
      This repository contains code used in the following publication: Jain S, Jou JD, Georgiev IS, and Donald BR. A Critical Analysis of Computational Protein Design with Sparse Residue Interaction Graphs. PLoS Comp Biol. 2017, In press. For the latest version of OSPREY, please try http://www.cs.duke.edu/donaldlab/osprey.php instead.
      Java
      •
      Other
      •0•1•0•0•Updated Jan 15, 2017Jan 15, 2017

    • OSPREY2

      Public
      Open Source Protein REdesign for You
      Java
      •
      Other
      •5•2•0•0•Updated Jun 4, 2014Jun 4, 2014