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    19 repositories

    • brieflow

      Public
      Extensible pipeline tool for processing optical pooled screens data.
      Python
      •
      MIT License
      •19•6•0•2•Updated Jul 28, 2025Jul 28, 2025

    • denali-analysis

      Public
      Analysis of Denali screen with brieflow.
      Jupyter Notebook
      •0•0•0•0•Updated Jul 26, 2025Jul 26, 2025

    • etna-analysis

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jul 24, 2025Jul 24, 2025

    • nebo-analysis

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jul 23, 2025Jul 23, 2025

    • swissisoform

      Public
      Python
      •
      MIT License
      •0•1•0•0•Updated Jul 21, 2025Jul 21, 2025

    • kilimanjaro-analysis

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jul 17, 2025Jul 17, 2025

    • baker-analysis

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jul 17, 2025Jul 17, 2025

    • olives-analysis

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jul 12, 2025Jul 12, 2025

    • cheeseman-lab.github.io

      Public
      Cheeseman lab website
      HTML
      •0•0•0•0•Updated Jul 9, 2025Jul 9, 2025

    • brieflow-analysis

      Public template
      Template repository for optical pooled screens that use brieflow.
      Jupyter Notebook
      •2•0•0•0•Updated Jul 2, 2025Jul 2, 2025

    • aconcagua-analysis-new

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jun 15, 2025Jun 15, 2025

    • mozzarellm

      Public
      Python
      •0•2•0•0•Updated May 27, 2025May 27, 2025

    • denali-analysis-old

      Public archive
      Analysis of Denali screen data using Brieflow!
      Jupyter Notebook
      •0•0•0•0•Updated May 22, 2025May 22, 2025

    • logan-analysis

      Public
      Jupyter Notebook
      •0•0•0•0•Updated May 13, 2025May 13, 2025

    • aconcagua-analysis

      Public
      Jupyter Notebook
      •0•0•0•0•Updated May 13, 2025May 13, 2025

    • goudacell

      Public
      0•0•0•0•Updated Apr 25, 2025Apr 25, 2025

    • emmentalembed

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Feb 5, 2025Feb 5, 2025

    • plm_sandbox

      Public
      Jupyter Notebook
      •
      Other
      •61•0•0•0•Updated Feb 4, 2025Feb 4, 2025

    • OpticalPooledScreens

      Public
      Examples and code for pooled optical screens
      Jupyter Notebook
      •
      MIT License
      •17•1•0•1•Updated Feb 3, 2025Feb 3, 2025