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    85 repositories

    • cytoverse

      Public
      Search and display cells in foundation model embedding space
      Jupyter Notebook
      •
      MIT License
      •0•1•1•1•Updated Oct 23, 2025Oct 23, 2025

    • Kilosort_docker

      Public
      Python
      •0•0•0•0•Updated Oct 16, 2025Oct 16, 2025

    • mission_control

      Public
      Contains the full stack of braingeneers services as well as start/stop procedures.
      Python
      •0•1•0•0•Updated Oct 15, 2025Oct 15, 2025

    • human_hippocampus

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •3•1•2•1•Updated Oct 7, 2025Oct 7, 2025

    • kilosort4

      Public
      Python
      •1•2•0•1•Updated Oct 2, 2025Oct 2, 2025

    • SIMS

      Public
      SIMS: Scalable, Interpretable Models for Cell Annotation of large scale single-cell RNA-seq data
      Python
      •
      MIT License
      •9•10•1•0•Updated Sep 14, 2025Sep 14, 2025

    • AndrewsGengVoitiukEtAl_SourceCode

      Public
      Source Code for our MS "Optogenetic modulation of epileptiform activity in human brain tissue"
      Jupyter Notebook
      •0•3•0•0•Updated Sep 11, 2025Sep 11, 2025

    • braingeneerspy

      Public
      Python package for Braingeneers data loading, analysis, and IoT.
      Python
      •
      MIT License
      •6•19•11•9•Updated Sep 8, 2025Sep 8, 2025

    • fluoroMicroscope_StageCO2Incubator

      Public
      STLs, STEP files for CAD of our fluorescent microscope and stage-top CO2 Incubator.
      0•0•0•0•Updated Aug 21, 2025Aug 21, 2025

    • Catalogger

      Public
      Python
      •0•0•0•0•Updated Aug 12, 2025Aug 12, 2025

    • Human_Hippocampus_Supplement

      Public
      Supplemental figures and tables for manuscript
      0•0•0•0•Updated Aug 2, 2025Aug 2, 2025

    • braindance

      Public
      Making neural stimulation easier
      Python
      •
      GNU General Public License v3.0
      •2•6•0•0•Updated Jul 18, 2025Jul 18, 2025

    • SpikeData

      Public
      Library for analyzing and manipulating spike time datasets.
      Python
      •
      MIT License
      •0•2•4•0•Updated Jul 17, 2025Jul 17, 2025

    • feedback-organoid-platform

      Public
      Supplementary Material for: "A feedback-driven brain organoid platform enables automated maintenance and high-resolution neural activity monitoring""
      Python
      •
      Other
      •0•0•0•0•Updated Jul 10, 2025Jul 10, 2025

    • rtsort-web

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jun 18, 2025Jun 18, 2025

    • sims-web

      Public
      Attempt to run SIMS inference in the browser
      Python
      •1•2•0•0•Updated Jun 13, 2025Jun 13, 2025

    • Protosequences

      Public
      Analysis code for our paper "Protosequences in brain organoids model intrinsic brain states"
      Jupyter Notebook
      •1•0•0•0•Updated May 19, 2025May 19, 2025

    • nwb-converter

      Public
      Python
      •0•1•0•0•Updated May 8, 2025May 8, 2025

    • midbrain_parkinsons

      Public
      Elliott's code for midbrain project
      Jupyter Notebook
      •3•1•0•0•Updated May 5, 2025May 5, 2025

    • nrp-base-image

      Public
      Dockerfile
      •0•0•0•1•Updated Apr 21, 2025Apr 21, 2025

    • HIPPIE

      Public
      High-dimensional Interpretation for Physiological Patterns in Intercellular Electrophysiology (HIPPIE), a cVAE framework designed for multimodal neuron classification and clustering by integrating extracellular action potential waveforms with spike-timing derived measurements.
      Python
      •
      Other
      •3•2•0•0•Updated Apr 7, 2025Apr 7, 2025

    • neural-link-mice

      Public
      Repo for deep learning approach to correlating between Hengenlab mice neural activity and physical activity.
      Jupyter Notebook
      •0•1•0•0•Updated Dec 13, 2024Dec 13, 2024

    • GcodeGoblin

      Public
      Tool to manipulate G-Code for heat embossing.
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 4, 2024Dec 4, 2024

    • cellxgene-ingest

      Public
      Download scRNASeq from CZ Cell x Gene Census upload to NRP S3 optimized for ML
      Python
      •
      MIT License
      •0•1•0•0•Updated Sep 18, 2024Sep 18, 2024

    • search

      Public
      Prototype search engine for experiment object store
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Aug 13, 2024Aug 13, 2024

    • mearec

      Public
      Playing around with MEArec temp/rec generation
      AGS Script
      •0•0•0•0•Updated Jun 18, 2024Jun 18, 2024

    • IOT_Education_Lab_on_Chip_Paper

      Public
      We wrote educational programs for remote IoT and local IoT outreach in Bolivia.
      Python
      •0•1•0•0•Updated May 14, 2024May 14, 2024

    • things

      Public
      Infrastructure to manage in lab linux endpoints collecting data and uploading to the cloud
      JavaScript
      •
      Apache License 2.0
      •0•0•2•1•Updated Apr 23, 2024Apr 23, 2024

    • piphys

      Public
      Light-weight electrophysiology hardware and software platform for cloud-based neural recording experiments
      C++
      •
      MIT License
      •4•19•1•0•Updated Feb 20, 2024Feb 20, 2024

    • braingeneers-docker-images

      Public
      Repository for braingeneers docker images
      Shell
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•0•0•Updated Jan 30, 2024Jan 30, 2024