Greater Paris University Hospitals (AP-HP)

All

39 repositories

edsnlp
Public
Modular, fast NLP framework, compatible with Pytorch and spaCy, offering tailored support for French clinical notes.
nlp fast text-mining deep-learning pytorch spacy medical french multi-task rule-based
Python
•
BSD 3-Clause "New" or "Revised" License
•32•125•41•15•Updated Aug 8, 2025Aug 8, 2025
Cohort360-QueryExecutor
Public
Scala
•
Mozilla Public License 2.0
•0•2•0•2•Updated Aug 6, 2025Aug 6, 2025
confit
Public
Confit is a complete and easy-to-use configuration framework aimed at improving the reproducibility of experiments by relying on the Python type annotations, minimal configuration files and a robust CLI.
python cli registry validation interpolation configuration
Python
•
BSD 3-Clause "New" or "Revised" License
•0•11•2•1•Updated Aug 6, 2025Aug 6, 2025
Cohort360-FrontEnd
Public
A web application to find patients, build cohorts and visualize health records
query data-visualization medical fhir visualize-data medtech clinical-data cohorts omop cohort-analysis
TypeScript
•
Apache License 2.0
•10•48•3•5•Updated Aug 2, 2025Aug 2, 2025
Cohort360-Back-end
Public
Part of the Cohort360 Project @ https://github.com/aphp/Cohort360, backend of the Cohort360 web app @ https://github.com/aphp/Cohort360-FrontEnd and the Administration Portal @ https://github.com/aphp/Cohort360-AdministrationPortal
api administration portal cohort
Python
•
Apache License 2.0
•1•5•0•3•Updated Jul 31, 2025Jul 31, 2025
Cohort360-AdministrationPortal
Public
TypeScript
•0•0•0•0•Updated Jul 29, 2025Jul 29, 2025
spark-solr
Public
Tools for reading data from Solr as a Spark RDD and indexing objects from Spark into Solr using SolrJ.
Scala
•
Apache License 2.0
•250•0•0•1•Updated Jul 29, 2025Jul 29, 2025
fhir-mapbuilder
Public
FHIR MapBuilder is a Visual Studio Code extension designed to facilitate the edition of FHIR StructureMap resources using FHIR Mapping Language (FML).
fhir fml
TypeScript
•
Other
•2•4•4•1•Updated Jul 25, 2025Jul 25, 2025
IG-fhir-dm
Public
FHIR Implementation Guide for Data Management
data-management hl7-fhir
GLSL
•
Other
•1•6•0•0•Updated Jul 25, 2025Jul 25, 2025
Cohort360
Public
HTML
•0•1•0•0•Updated Jul 24, 2025Jul 24, 2025
redcap-helmchart
Public
APHP REDCap cloud-native and vendor-agnostic HelmChart
cloud health redcap helmchart ecrf aphp
Smarty
•
Apache License 2.0
•2•3•0•1•Updated Jul 9, 2025Jul 9, 2025
IG-fhir-formbuilder
Public
GLSL
•
Other
•0•3•0•1•Updated Jun 26, 2025Jun 26, 2025
ci-workflows
Public
This repository hosts GitHub Workflows examples to be used in APHP Projects
Apache License 2.0
•0•0•0•0•Updated Jun 19, 2025Jun 19, 2025
redcap-containers
Public
A set of container images used to run APHP REDCap Helmchart
cloud container health redcap ecrf
Dockerfile
•
Apache License 2.0
•1•0•0•0•Updated Jun 17, 2025Jun 17, 2025
rgho
Public
🌐Access WHO Global Health Observatory Data From R
R
•
GNU General Public License v3.0
•0•5•0•0•Updated Jun 16, 2025Jun 16, 2025
heemod
Public
Markov Models for Health Economic Evaluations
R
•
GNU General Public License v3.0
•2•16•3•0•Updated Jun 16, 2025Jun 16, 2025
foldedtensor
Public
PyTorch extension for handling deeply nested sequences of variable length
Python
•
BSD 3-Clause "New" or "Revised" License
•0•10•1•1•Updated Jun 4, 2025Jun 4, 2025
hl7.fhir.fr.core
Public
FHIR FrCore Implementation Guide
GLSL
•
Other
•6•0•0•0•Updated Jun 4, 2025Jun 4, 2025
eds-pseudo
Public
EDS-Pseudo is a hybrid model for detecting personally identifying entities in clinical reports
nlp pseudonymisation edsnlp
Python
•
Other
•6•57•1•0•Updated Apr 18, 2025Apr 18, 2025
synthea
Public
Synthetic Patient Population Simulator
Java
•
Apache License 2.0
•756•0•0•0•Updated Apr 1, 2025Apr 1, 2025
edspdf
Public
EDS-PDF is a generic, pure-Python framework for text extraction from PDF documents. It provides the machinery to use rule- or machine-learning-based approaches to classify text blocs between body and meta-data.
pdf machine-learning extraction
Python
•
BSD 3-Clause "New" or "Revised" License
•7•51•0•0•Updated Feb 12, 2025Feb 12, 2025
IG-FHIR-EDS-SOCLE-COMMUN
Public
Guide d'implémentation FHIR du socle EDS
GLSL
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MIT License
•2•2•0•0•Updated Feb 2, 2025Feb 2, 2025
eds-scikit
Public
eds-scikit is a Python library providing tools to process and analyse OMOP data
data-science medical omop clinical-data-warehouse python
Python
•
BSD 3-Clause "New" or "Revised" License
•5•40•9•5•Updated Dec 19, 2024Dec 19, 2024
federation-api
Public
Python
•0•0•0•0•Updated Dec 10, 2024Dec 10, 2024
ig-template-aphp
Public
CSS
•0•0•0•0•Updated Sep 20, 2024Sep 20, 2024
ipptoinclusion
Public
R
•
GNU General Public License v3.0
•0•1•0•0•Updated Aug 2, 2024Aug 2, 2024
edsteva
Public
EDS-TeVa provides a set of tools that aims at modeling the adoption over time and across space of the Electronic Health Records.
Python
•
BSD 3-Clause "New" or "Revised" License
•0•13•5•1•Updated Nov 6, 2023Nov 6, 2023
edstuto
Public
A variety of tutorials introducing some issues related to the analysis of health real world data available for researchers in clinical data warehouses.
Jupyter Notebook
•1•4•0•0•Updated Sep 29, 2023Sep 29, 2023
spark-etl
Public
Better bridge apache spark and postgresql
spark etl postgresql
Scala
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Apache License 2.0
•8•23•1•9•Updated Sep 11, 2023Sep 11, 2023
edspdf-poppler
Public
Poppler extension for EDS-PDF
python pdf extractor bindings prebuilt poppler edspdf
Python
•
GNU General Public License v2.0
•0•0•1•0•Updated Jun 13, 2023Jun 13, 2023