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    26 repositories

    • TIBD_microenvironment

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 9, 2025Aug 9, 2025

    • Fanconi_Anemia

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 2, 2025Aug 2, 2025

    • Mitochondrial_Complex_II

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 2, 2025Aug 2, 2025

    • TIBD_biochem

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 2, 2025Aug 2, 2025

    • FA_Metabolism

      Public
      Bioenergetics assays and more for studying FA metabolic dysfunction
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 2, 2025Aug 2, 2025

    • GutLogo

      Public
      Agent-based Model of the Human Gut Microbiome
      HTML
      •2•0•0•0•Updated Jul 14, 2025Jul 14, 2025

    • Ferroptosis

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 29, 2025Jun 29, 2025

    • Cell_Morphology

      Public
      MATLAB
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 28, 2025Jun 28, 2025

    • earm

      Public
      EARM V2.0 FILES
      Python
      •17•0•0•0•Updated Jun 17, 2025Jun 17, 2025

    • Oral-Microbiome

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 12, 2025Apr 12, 2025

    • Cellulose

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Feb 17, 2025Feb 17, 2025

    • BMEG-4700V_5700V

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Feb 8, 2025Feb 8, 2025

    • BooleanModel_SOCE

      Public
      This repository contains code for a Boolean model of MAPK/SOCE crosstalk
      Python
      •1•0•0•0•Updated Dec 20, 2024Dec 20, 2024

    • Hayford_Melanoma_2024

      Public
      Repository for Hayford, Stauffer, Baleami et al. (2024) melanoma persisters paper
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 31, 2024Aug 31, 2024

    • WNT_signaling

      Public
      WNT signaling pathway model built by the Alpha Research Project team at the University of Arkansas
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 24, 2024Apr 24, 2024

    • Endocrine

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 12, 2024Apr 12, 2024

    • FA_Boolean

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 20, 2024Mar 20, 2024

    • Collagen_model

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 25, 2024Jan 25, 2024

    • ML_mechanistic

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 12, 2023Oct 12, 2023

    • SPARCED_to_PySB

      Public
      converting SPARCED pan cancer model to rule based format in PySB
      Python
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Jul 26, 2023Jul 26, 2023

    • pysb_sandbox

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 16, 2023Jun 16, 2023

    • SCLC_invasion

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 26, 2023Apr 26, 2023

    • DNA_methylation

      Public
      Reproduction of models from https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1007195
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 7, 2022Dec 7, 2022

    • SCLC_TCell_model

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 7, 2022Sep 7, 2022

    • HedgehogPathway

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 12, 2022Aug 12, 2022

    • pysb-tutorials

      Public
      PySB tutorials and examples for IPython (Jupyter) notebook
      Jupyter Notebook
      •6•0•0•0•Updated Sep 13, 2021Sep 13, 2021