RajLabMSSM

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61 repositories

RNA-pipelines
Public
A repo to contain various RNA-seq processing pipelines, to cut down how many different repos I have.
Python
•3•3•4•0•Updated Oct 6, 2025Oct 6, 2025
GBA-LRRK2-monocytes
Public
0•0•0•0•Updated Oct 2, 2025Oct 2, 2025
editing-pipeline
Public
A set of snakemake pipelines for doing RNA editing
R
•3•4•0•0•Updated Sep 25, 2025Sep 25, 2025
echotabix
Public
echoverse module: Tabix indexing and querying.
genomics tabix vcf-files echoverse
R
•0•0•3•0•Updated Aug 23, 2025Aug 23, 2025
mmQTL-pipeline
Public
Python
•
MIT License
•0•5•0•0•Updated Aug 14, 2025Aug 14, 2025
SingleBrain
Public
R
•0•4•0•0•Updated Jul 18, 2025Jul 18, 2025
SAIGEQTL-pipeline
Public
R
•
MIT License
•0•0•0•0•Updated Jul 11, 2025Jul 11, 2025
downstream-QTL
Public
set of scripts and pipelines to work with QTL results
HTML
•2•8•7•2•Updated May 22, 2025May 22, 2025
QTL-mapping-pipeline
Public
A snakemake pipeline for QTL mapping. Based on the GTEX pipeline
snakemake pipeline eqtl sqtl
Python
•0•6•4•0•Updated May 19, 2025May 19, 2025
isoseq-pipeline
Public
pipeline for working with PacBio long read RNA data using the outputs of isoseq3
rna-seq pipeline long-reads
Python
•4•9•2•0•Updated Apr 8, 2025Apr 8, 2025
leafcutter-pipeline
Public
Differential splicing and visualisation pipeline for the Raj lab
rna-seq pipeline splicing
Python
•5•3•4•2•Updated Mar 25, 2025Mar 25, 2025
echogithub
Public
echoverse module: Extract data and metadata from GitHub
github api r r-packages package-repository-visualisation echoverse
R
•1•0•3•0•Updated Dec 16, 2024Dec 16, 2024
RajLab_website
Public
Official website for the Raj Lab detailing personnel, updates, current projects and opportunities.
CSS
•
GNU General Public License v3.0
•1•1•0•0•Updated Dec 13, 2024Dec 13, 2024
MBV_Pipeline
Public
Python
•0•0•1•0•Updated Nov 26, 2024Nov 26, 2024
Genotype_QC_Pipeline_2.0
Public
Python
•0•1•1•0•Updated Oct 1, 2024Oct 1, 2024
isoMiGA
Public
The isoform-centric microglia genomic atlas.
1•1•0•0•Updated Oct 1, 2024Oct 1, 2024
RNA_Editing_Monocytes
Public
RNA Editing project
Jupyter Notebook
•0•0•0•0•Updated Jul 16, 2024Jul 16, 2024
echoconda
Public
echoverse module: conda environment handling
python r anaconda conda-environment echoverse
R
•2•1•3•0•Updated Jun 4, 2024Jun 4, 2024
echoLD
Public
echoverse module: LD downloading and processing
linkage-disequilibrium genomics 1000genomes ukbiobank echoverse
R
•0•1•4•0•Updated May 10, 2024May 10, 2024
downloadR
Public
echoverse module: Single- and multi-threaded downloading functions.
download-manager vcf-files echoverse
R
•0•1•2•0•Updated May 10, 2024May 10, 2024
devoptera
Public
⏩ Practical tools for R developers ⏪ 🔧🦇 🔨🦇 🧰🦇
developer-tools r-package echoverse
R
•0•1•0•0•Updated Apr 1, 2024Apr 1, 2024
AR_Rotation
Public
HTML
•0•0•0•0•Updated Feb 29, 2024Feb 29, 2024
snakeSV
Public
Snakemake pipeline for SV discovery and analysis
snakemake sv structural-variation
Python
•
MIT License
•2•6•2•0•Updated Dec 3, 2023Dec 3, 2023
echodata
Public
echoverse module: Example data.
data gwas genomics qtl fine-mapping echoverse
R
•1•0•4•0•Updated Nov 17, 2023Nov 17, 2023
echodeps
Public
echoverse module: Create package dependency graphs
networks dependencies rpackages echoverse
R
•0•0•1•0•Updated Oct 27, 2023Oct 27, 2023
echoplot
Public
echoverse module: Locus plot creation for fine-mapping and colocalization studies.
gwas plotting qtl locus colocalization fine-mapping echoverse
R
•1•5•4•0•Updated Oct 21, 2023Oct 21, 2023
echoverseTemplate
Public template
Self-updating template for creating echoverse R packages.
r templates rpackage echoverse
R
•0•0•0•0•Updated Oct 20, 2023Oct 20, 2023
echoannot
Public
echoverse module: Annotate fine-mapping results
genome-annotation epigenomics fine-mapping echoverse
R
•0•2•8•0•Updated Oct 20, 2023Oct 20, 2023
MiGA_public_release
Public
HTML
•
MIT License
•0•7•2•0•Updated Aug 1, 2023Aug 1, 2023
ldsc
Public
LD Score Regression Pipeline
Python
•
MIT License
•1•1•0•0•Updated Jun 12, 2023Jun 12, 2023