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New website #45

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464bd86
Test Vue loader
Jan 12, 2021
fbaffc2
Fist prototype
Jan 12, 2021
f3b2b5b
Fix code highligthing
Jan 12, 2021
89c8e64
Add the script builder
Jan 12, 2021
1335651
Add the news
Jan 12, 2021
f483142
Remove not working frame
Jan 15, 2021
98f129d
Fix the news tab
Jan 15, 2021
87edfcb
Add a docs tab
Jan 16, 2021
a059c4d
Copy the old content
Jan 16, 2021
129f0c8
Add a benchmark tab
Jan 16, 2021
19254f2
Add partially the tutorial tab
Jan 16, 2021
be6978a
Add .nojekyll
Jan 16, 2021
b951ebe
Add all tutorials
Jan 16, 2021
966bfa6
Improve the news tab
Jan 16, 2021
44afdb7
Add a footer
Jan 16, 2021
8573656
Fix favicon
Jan 16, 2021
5eb21e4
Fix the favicon again
Jan 16, 2021
71c872b
Improve the home tab
Jan 16, 2021
7d9a9dc
Improve the benchmark tab
Jan 17, 2021
dd223b2
Finish the documentation tab
Jan 19, 2021
fa74f80
Add the people tab
Jan 19, 2021
ce3d7f3
Organize the old stuff into one tab
Jan 20, 2021
d7b140e
Reorganize the home tab
Jan 20, 2021
d0447ce
Fix the carousel
Jan 20, 2021
995db5a
Fix icons
Jan 20, 2021
f8109b8
Finish the carousel
Jan 21, 2021
5983e65
Add tab icons
Jan 21, 2021
f09de2b
Better mactch logo colors
Jan 21, 2021
baafa83
Clean up the temporary tab
Jan 21, 2021
990de24
Finish the benchmark tab
Jan 23, 2021
47e78da
Partially implement the ecosystem tab
Jan 25, 2021
92143d0
Finish the ecosystem tab
Feb 1, 2021
efe62e0
Add the publication
Feb 1, 2021
9753086
Clean up
Feb 1, 2021
9855cd5
Rename "People" to "Development" and add funding info
Feb 3, 2021
2c3c0bc
Fix the formating of the publication
Feb 3, 2021
788b8a9
Partially add the support section
Feb 3, 2021
12ee26f
Remove the tmp tab
Feb 19, 2021
3851d51
Improve tutorial rendering
Feb 26, 2021
a145023
Clean up the tutorials
Feb 26, 2021
600b5ba
One more clean up of a tutorial
Feb 26, 2021
d4155d4
Clean up the tutorials tab
Feb 26, 2021
07f62d8
Fix the scalling of the header
Apr 1, 2021
f7b6966
Clean up the home tab
Apr 1, 2021
a0e5558
Improve the footer
Apr 1, 2021
c9c6fc4
Some SEO
Apr 1, 2021
a6cb0a4
Switch to JSDelivr for JS and CSS
Apr 1, 2021
771bfcf
Reduce the layout shift
Apr 1, 2021
5dce2f1
Improve highlightjs loading
Apr 1, 2021
61452de
Simply slide color code
Apr 1, 2021
e2b468b
Change the benchmark tab icon
Apr 1, 2021
3893da6
Add Google Analytics
Apr 1, 2021
9c12657
Slowdown the carousel transition to 5 s
Apr 13, 2021
df2166d
Make the expansion panels boxed in the benchmark tab
Apr 13, 2021
02531dc
Fix Script Builder button
Apr 13, 2021
c179396
Expand the installation instructions
Apr 13, 2021
f4cfe22
Add GitHub ribbon
Apr 13, 2021
3f40566
Fix the top text
Apr 13, 2021
3839aa1
Fix a typo
Apr 13, 2021
f6d6506
Disable YouTube tracking
Apr 21, 2021
e3355f5
Remove a link to builder.openmm.org
Apr 21, 2021
540ece0
Change "Fork me.." to "Visit me..."
Apr 23, 2021
7aa83e4
Embbed a Google Colab notebook
Apr 27, 2021
660544d
Fix a typo
May 7, 2021
beff327
Simplify the notebook embeding
May 8, 2021
2529e59
Add a Twitter button
May 11, 2021
1978e40
Ajust the notbook size
May 11, 2021
7c42528
Clean up the home tab
May 17, 2021
9cf5663
Add "Run in Colab"
May 17, 2021
77d6ac0
Adjust the notebook size again
May 31, 2021
b2cbee2
Remove a reference to Omnia
Jun 1, 2021
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Copy the old content
Raimondas Galvelis committed Jan 16, 2021
commit a059c4d232b6b1ca32b2a006795b72d924c6ff0f
114 changes: 0 additions & 114 deletions documentation.html

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115 changes: 115 additions & 0 deletions documentation.vue
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The C++ API provides information about OpenMM's C++ interface.
</v-card-text>
</v-card>

<v-spacer/>

<div class="jumbotron jumbtron-color">
<div class="container">
<div class="row clearfix">
<div class="col-md-12 column">
<!-- <a href="https://github.com/simtk/openmm"><img style="float: right; border: 0; z-index: 1000" src="https://camo.githubusercontent.com/365986a132ccd6a44c23a9169022c0b5c890c387/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f72696768745f7265645f6161303030302e706e67" alt="Fork me on GitHub" data-canonical-src="https://s3.amazonaws.com/github/ribbons/forkme_right_red_aa0000.png"></a>
-->
<h1>Documentation</h1>
<p>Resources for finding your way around OpenMM.</p>
</div>
</div>
</div>
</div>

<div class="container">
<div class="row">
<div class="col-md-10" role="main">
<div>
<h2 class="page-header">Getting Started</h2>
<p class="lead"> The easiest way to get started is to familiarize yourself with the User Guide, which contains basics about installing OpenMM, making sure that it runs smoothly, and running a couple of example simulations. </p>
<div class="row clearfix">
<div class="col-md-3 column">
<h3>
<a href="http://docs.openmm.org/latest/userguide/index.html">User Guide</a>
</h3>
<p class="enlarge">
Start here if it's your first time using OpenMM. These documents will get you up and running simulations in short order.
</p>
</div>
<div class="col-md-3 column">
<h3>
<a href="http://docs.openmm.org/latest/developerguide/index.html">Dev Guide</a>
</h3>
<p class="enlarge">
This section provides in-depth information on the code-base and how to contribute to the development of OpenMM itself.
</p>
</div>
<div class="col-md-3 column">
<h3>
<a href="http://docs.openmm.org/latest/api-python/index.html">Python API
</a>
</h3>
<p class="enlarge">
The Python API provides information about the classes and methods available to Python developers.
</p>
</div>
<div class="col-md-3 column">
<h3>
<a href="http://docs.openmm.org/latest/api-c++/index.html">C++ API
</a>
</h3>
<p class="enlarge">
The C++ API provides information about OpenMM's C++ interface.
</p>
</div>
</div>

<h2 class="page-header">Workshop Videos</h2>
<p class="lead">Every year, we hold several OpenMM workshops at Stanford University. After you have successfully installed OpenMM, here are some introductory videos from previous workshops.</p>
<h4>Introduction to OpenMM</h4>
<iframe width="920" height="540" src="http://www.youtube.com/embed/hbQ_dfgWPc8" frameborder="0" allowfullscreen></iframe>
<h4>Running Simulations with OpenMM</h4>
<iframe width="920" height="540" src="https://www.youtube.com/embed/XZ0A_L_2pnI" frameborder="0" allowfullscreen></iframe>
<p class="text-center">
<a class="btn btn-primary btn-large" href="https://www.youtube.com/user/SimbiosOpenMM">More videos</a>
</p>

<h2 class="page-header">The Bleeding Edge</h2>
<p class="lead">Visit <a href="https://github.com/pandegroup/openmm">the OpenMM GitHub repo</a> to stay up to date with the latest development version of OpenMM.</p>
<h4>Development Snapshot Documentation</h4>
<div class="row clearfix">
<div class="col-md-3 column">
<h3>
<a href="http://docs.openmm.org/development/userguide/index.html">User Guide</a>
</h3>
<p class="enlarge">
Start here if it's your first time using OpenMM. These documents will get you up and running simulations in short order.
</p>
</div>
<div class="col-md-3 column">
<h3>
<a href="http://docs.openmm.org/development/developerguide/index.html">Dev Guide</a>
</h3>
<p class="enlarge">
This section provides in-depth information on the code-base and how to contribute to the development of OpenMM itself.
</p>
</div>
<div class="col-md-3 column">
<h3>
<a href="http://docs.openmm.org/development/api-python/index.html">Python API
</a>
</h3>
<p class="enlarge">
The Python API provides information about the classes and methods available to Python developers.
</p>
</div>
<div class="col-md-3 column">
<h3>
<a href="http://docs.openmm.org/development/api-c++/index.html">C++ API
</a>
</h3>
<p class="enlarge">
The C++ API provides information about OpenMM's C++ interface.
</p>
</div>
</div>

</div>
</div>
</div>
</div>


</v-container>
</template>
6 changes: 4 additions & 2 deletions index.html
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@@ -33,8 +33,8 @@
<v-tab-item>Empty</v-tab-item>
<v-tab-item>Empty</v-tab-item>
<v-tab-item><tab-documenation/></v-tab-item>
<v-tab-item>Empty</v-tab-item>
<v-tab-item>Empty</v-tab-item>
<v-tab-item><tab-support/></v-tab-item>
<v-tab-item><tab-resources/></v-tab-item>
<v-tab-item>Empty</v-tab-item>
</v-tabs-items>
<div v-show="tab === 2">
@@ -60,6 +60,8 @@
'tab-home': httpVueLoader('home.vue'),
'tab-about': httpVueLoader('about.vue'),
'tab-documenation': httpVueLoader('documentation.vue'),
'tab-support': httpVueLoader('support.vue'),
'tab-resources': httpVueLoader('resources.vue'),
},
data: { tab: 0 }
});
33 changes: 0 additions & 33 deletions resources.html

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33 changes: 33 additions & 0 deletions resources.vue
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@@ -0,0 +1,33 @@
<template>
<div>
<div class="jumbotron jumbtron-color">
<div class="container">
<div class="row clearfix">
<div class="col-md-12 column">
<!-- <a href="https://github.com/simtk/openmm"><img style="float: right; border: 0; z-index: 1000" src="https://camo.githubusercontent.com/365986a132ccd6a44c23a9169022c0b5c890c387/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f72696768745f7265645f6161303030302e706e67" alt="Fork me on GitHub" data-canonical-src="https://s3.amazonaws.com/github/ribbons/forkme_right_red_aa0000.png"></a>
-->
<h1>Resources</h1>
<p>Resources that make it easier to use OpenMM.</p>
</div>
</div>
</div>
</div>

<div class="container">
<div class="row">
<div class="col-md-10" role="main">
<div>
<p class="lead">The OpenMM team has reviewed the links on this page, but we encourage the community to add their own.</p>
<h2 class="page-header">Tools</h2>
<p class="lead"> <a href="https://omniamd.squarespace.com">Omnia</a> An open source ecosystem built around OpenMM.</p>
<p class="lead"> <a href="https://openmmtools.readthedocs.io">OpenMMTools</a> Integrators, enhanced sampling methods, test systems, and alchemical factories for OpenMM.</p>
<p class="lead"> <a href="https://github.com/openmm/openmm-setup">OpenMM Setup</a> A graphical application to set up and run simulations with OpenMM. Includes pull-down menus, pop-up tips, error checking, and live script building capabilities.</p>
<p class="lead"> <a href="https://simtk.org/svn/pyopenmm/trunk/simtk/pyopenmm/extras/optimizepme.py">PME Optimizer</a> A script to optimize the performance of PME. It runs a series of simulations and selects the parameters that give best performance for simulating a particular system on particular hardware.</p>
<p class="lead"> <a href="https://github.com/leeping/OpenMM-MD">OpenMM-MD</a> A general purpose script (with lots of comments) that uses the OpenMM Python module to drive MD simulations. Simulation options are handled via an input file. To facilitate use of the script, the available options are always printed out for you to see, along with documentation.</p>
</div>
</div>
</div>
</div>
</div>
</template>

29 changes: 0 additions & 29 deletions support.html

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