[PRE REVIEW]: spopt: a python package for solving spatial optimization problems in PySAL

[whedon]

Submitting author: @xf37 (Xin Feng)
Repository: https://github.com/pysal/spopt
Version: v0.1.1
Editor: @vissarion
Reviewers: @ArikaLZ, @samuel-rosa
Managing EiC: Kyle Niemeyer

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Author instructions

Thanks for submitting your paper to JOSS @xf37. Currently, there isn't an JOSS editor assigned to your paper.

@xf37 if you have any suggestions for potential reviewers then please mention them here in this thread (without tagging them with an @). In addition, this list of people have already agreed to review for JOSS and may be suitable for this submission (please start at the bottom of the list).

Editor instructions

The JOSS submission bot @whedon is here to help you find and assign reviewers and start the main review. To find out what @whedon can do for you type:

@whedon commands

[whedon]

Hello human, I'm @whedon, a robot that can help you with some common editorial tasks.

⚠️ JOSS reduced service mode ⚠️

Due to the challenges of the COVID-19 pandemic, JOSS is currently operating in a "reduced service mode". You can read more about what that means in our blog post.

For a list of things I can do to help you, just type:

@whedon commands

For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

@whedon generate pdf

[whedon]

Software report (experimental):

github.com/AlDanial/cloc v 1.88  T=0.14 s (488.9 files/s, 185784.4 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
SVG                              2              0             15           8419
Python                          29           1066           2633           2811
Jupyter Notebook                13              0           9542            641
YAML                            11              7             14            319
Markdown                         3             55              0            164
TeX                              2             20              2            157
CSS                              1             11              3             64
reStructuredText                 5             67             89             58
DOS Batch                        1              8              1             27
make                             1              6              6             16
JSON                             1              0              0              1
-------------------------------------------------------------------------------
SUM:                            69           1240          12305          12677
-------------------------------------------------------------------------------


Statistical information for the repository 'fae4d82e93e72006bb15854f' was
gathered on 2021/05/21.
The following historical commit information, by author, was found:

Author                     Commits    Insertions      Deletions    % of changes
James Gaboardi                  35          1217            408            3.60
Serge                            1             7             14            0.05
Serge Rey                       23          2663            296            6.56
Xin Feng                        27         21564            353           48.62
eli knaap                        9            39          17963           39.93
rwei5                            6           304            254            1.24

Below are the number of rows from each author that have survived and are still
intact in the current revision:

Author                     Rows      Stability          Age       % in comments
James Gaboardi              934           76.7          9.0                4.60
Serge Rey                  2140           80.4          4.3                9.58
Xin Feng                   3386           15.7          3.7                7.03
eli knaap                    18           46.2          2.0               27.78
rwei5                        32           10.5         20.0               18.75

[whedon]

PDF failed to compile for issue #3303 with the following error:

 /app/vendor/ruby-2.6.6/lib/ruby/2.6.0/psych.rb:456:in `parse': (6de427152a8b225b8de3949c/paper/paper.md): mapping values are not allowed in this context at line 20 column 11 (Psych::SyntaxError)
	from /app/vendor/ruby-2.6.6/lib/ruby/2.6.0/psych.rb:456:in `parse_stream'
	from /app/vendor/ruby-2.6.6/lib/ruby/2.6.0/psych.rb:390:in `parse'
	from /app/vendor/ruby-2.6.6/lib/ruby/2.6.0/psych.rb:277:in `load'
	from /app/vendor/ruby-2.6.6/lib/ruby/2.6.0/psych.rb:578:in `block in load_file'
	from /app/vendor/ruby-2.6.6/lib/ruby/2.6.0/psych.rb:577:in `open'
	from /app/vendor/ruby-2.6.6/lib/ruby/2.6.0/psych.rb:577:in `load_file'
	from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/lib/whedon.rb:127:in `load_yaml'
	from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/lib/whedon.rb:87:in `initialize'
	from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/lib/whedon/processor.rb:38:in `new'
	from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/lib/whedon/processor.rb:38:in `set_paper'
	from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/bin/whedon:58:in `prepare'
	from /app/vendor/bundle/ruby/2.6.0/gems/thor-0.20.3/lib/thor/command.rb:27:in `run'
	from /app/vendor/bundle/ruby/2.6.0/gems/thor-0.20.3/lib/thor/invocation.rb:126:in `invoke_command'
	from /app/vendor/bundle/ruby/2.6.0/gems/thor-0.20.3/lib/thor.rb:387:in `dispatch'
	from /app/vendor/bundle/ruby/2.6.0/gems/thor-0.20.3/lib/thor/base.rb:466:in `start'
	from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-92346a0773a4/bin/whedon:131:in `<top (required)>'
	from /app/vendor/bundle/ruby/2.6.0/bin/whedon:23:in `load'
	from /app/vendor/bundle/ruby/2.6.0/bin/whedon:23:in `<main>'

[kyleniemeyer]

Hi @xf37, I think the issue with your paper is in the YAML block at the top—there is an indentation error with the orcid field for Sergio Rey.

[kyleniemeyer]

@whedon invite @vissarion as editor

Hi @vissarion, could you edit this submission?

[whedon]

@vissarion has been invited to edit this submission.

[jGaboardi]

@whedon generate pdf

[whedon]

👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

[vissarion]

@whedon assign me as editor

[whedon]

OK, the editor is @vissarion

[vissarion]

👋 @apulverizer, @samuel-rosa, @michstrauch, @ncxiao, would any of you be willing to review this submission for JOSS? We carry out our checklist-driven reviews here in GitHub issues and follow these guidelines: https://joss.readthedocs.io/en/latest/review_criteria.html

[vissarion]

Hi, @rowanc1, @sarats, @MichaelHoltonPrice, @PaulDebus, would any of you be willing to review this submission for JOSS?

[vissarion]

@whedon add @ArikaLZ as reviewer

[whedon]

OK, @ArikaLZ is now a reviewer

[samuel-rosa]

@whedon assign me as reviewer

[whedon]

I'm sorry @samuel-rosa, I'm afraid I can't do that. That's something only editors are allowed to do.

[samuel-rosa]

Hi @vissarion, you can count on me to review this paper.

[vissarion]

@whedon add @samuel-rosa as reviewer

[whedon]

OK, @samuel-rosa is now a reviewer

[vissarion]

@whedon start review

[whedon]

OK, I've started the review over in #3330.