Incorrect attachment names in JATS

[sneakers-the-rat]

06802

Attachments have content hash names, but JATS refers to them with relative paths that don't exist like ../assets/figure/etc.png

• joss-papers/joss.06802/paper.jats/10.21105.joss.06802.jats

  Line 159 in acc3538

  <graphic mimetype="image" mime-subtype="png" xlink:href="../assets/images/overview_2.png" />

• joss-papers/joss.06802/paper.jats/10.21105.joss.06802.jats

  Line 185 in acc3538

  <graphic mimetype="image" mime-subtype="png" xlink:href="../assets/images/pipelines.png" />

• joss-papers/joss.06802/paper.jats/10.21105.joss.06802.jats

  Line 285 in acc3538

  <graphic mimetype="image" mime-subtype="png" xlink:href="../assets/images/applications.png" />

• joss-papers/joss.06802/paper.jats/10.21105.joss.06802.jats

  Line 232 in acc3538

  <graphic mimetype="image" mime-subtype="svg+xml" xlink:href="../assets/images/augmentation_pipeline.svg" />

05744

has two .jats files - the one in paper.jats refers to media files in the current directory, but they don't exist. they are in the media directory - https://github.com/openjournals/joss-papers/blob/master/joss.05744/paper.jats/10.21105.joss.05744.jats

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Full list

Here are all the jats files that refer to files that don't exist where they are supposed to be. Most of these are fairly recent, so it suggests that something is wrong with the new nested style of jats.paper directory style generation. i don't know for sure but it looks like 03860's pdfs were before we handled pdfs properly?

generated with https://github.com/sneakers-the-rat/joss-migrate-pmc/blob/31ef3ace00a8b4dd96622ca89510118b0215a242/src/joss_migrate_pmc/checks.py#L29

	jats	missing
0	joss-6-03860/10.21105.joss.03860.jats	media/flowtorch_components_plain.pdf
1	joss-6-03860/10.21105.joss.03860.jats	media/dmd_modes_airfoil_cp.pdf
2	joss-6-03860/10.21105.joss.03860.jats	media/cnm_cluster_transition.pdf
3	joss-9-06711/10.21105.joss.06711.jats	./images/RoughnessExample.png
4	joss-7-04622/10.21105.joss.04622.jats	media/figures/software_illustration.png
5	joss-7-04622/10.21105.joss.04622.jats	media/figures/code_snippet.png
6	joss-9-06598/10.21105.joss.06598.jats	./../docs/images/BitPackingTable.png?raw=true
7	joss-9-06598/10.21105.joss.06598.jats	./../docs/images/ExampleEncoding.png?raw=true
8	joss-9-06802/10.21105.joss.06802.jats	../assets/images/overview_2.png
9	joss-9-06802/10.21105.joss.06802.jats	../assets/images/pipelines.png
10	joss-9-06802/10.21105.joss.06802.jats	../assets/images/augmentation_pipeline.svg
11	joss-9-06802/10.21105.joss.06802.jats	../assets/images/applications.png
12	joss-9-05756/10.21105.joss.05756.jats	media/Figure%201.png
13	joss-9-05756/10.21105.joss.05756.jats	media/Figure%202.png
14	joss-8-05403/10.21105.joss.05403.jats	media/graphics/espnet-SE%2B%2B.png
15	joss-9-06930/10.21105.joss.06930.jats	https://github.com/mnets/pymnet/blob/publication/paper/figs/l2_n3.png?raw=true
16	joss-9-06930/10.21105.joss.06930.jats	https://github.com/mnets/pymnet/blob/publication/paper/figs/cites-trades_commercial_live-meat.png?raw=true
17	joss-9-05854/10.21105.joss.05854.jats	media/physiolabxr%20teaser.png
18	joss-9-05854/10.21105.joss.05854.jats	media/scripting%20example.png
19	joss-9-05854/10.21105.joss.05854.jats	media/PhysioLabXR%20Sequence%20Diagram.png
20	joss-9-06645/10.21105.joss.06645.jats	../graphdb-visual.png