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Invalid directory specified for file system service #6110

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atarkowska opened this issue Oct 7, 2019 · 5 comments
Open

Invalid directory specified for file system service #6110

atarkowska opened this issue Oct 7, 2019 · 5 comments

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@atarkowska
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atarkowska commented Oct 7, 2019 •
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Looks like this old bug #1185 is still present some how

Caused by: java.lang.IllegalArgumentException: Invalid directory specified for file system service. /nfs/omero/idr-repo/omero-server
@mtbc
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mtbc commented Oct 7, 2019

I routinely run local testing without /OMERO/ existing. Perhaps there's some issue with one of the directories immediately below omero.data.dir?

@atarkowska
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I am affraid this is empty folder, please see below

$ ls -al /nfs/omero/idr-repo/omero-server/
total 50
drwxrwx--- 4 omero omero   61 Oct  7 13:01 .
drwxrwx--- 5 root  root 77 Oct  4 16:14 ..
drwxrwx--- 2 omero omero   58 Oct  4 16:14 FullText
drwxrwx--- 2 omero omero    0 Oct  7 13:01 ManagedRepository

@mtbc
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mtbc commented Oct 7, 2019

Could you paste the whole stack trace? I wonder if there's some clue in the call path to confirm which of the abstract FS instances is complaining.

@atarkowska
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atarkowska commented Nov 1, 2019 •
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@mtbc sorry I missed your comment

2019-11-01 12:04:28,624 ERROR [                ome.services.blitz.Entry] (      main) Error on startup.
org.springframework.beans.factory.access.BootstrapException: Unable to return specified BeanFactory instance: factory key [OMERO.blitz], from group with resource name [classpath*:beanRefContext.xml]; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'OMERO.blitz' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-blitz.jar!/beanRefContext.xml]: Cannot resolve reference to bean 'ome.server' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'ome.server' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/beanRefContext.xml]: Bean instantiation via constructor failed; nested exception is org.springframework.beans.BeanInstantiationException: Failed to instantiate [ome.system.OmeroContext]: Constructor threw exception; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'ome.util.MapPut#0' defined in class path resource [ome/services/hibernate.xml]: Cannot resolve reference to bean 'fullTextIndexer' while setting bean property 'object'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'fullTextIndexer' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.api.Search.xml]: Cannot resolve reference to bean 'eventLogLoader' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'eventLogQueue' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.api.Search.xml]: Cannot resolve reference to bean 'internal-ome.api.ITypes' while setting bean property 'types'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'internal-ome.api.ITypes' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.api.ITypes.xml]: Cannot resolve reference to bean 'internal-ome.api.IUpdate' while setting bean property 'updateService'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'internal-ome.api.IUpdate' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.api.IUpdate.xml]: Cannot resolve reference to bean 'fullTextBridge' while setting bean property 'fullTextBridge'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'fullTextBridge' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.api.Search.xml]: Cannot resolve reference to bean '/OMERO/Files' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name '/OMERO/Files' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.io.nio.OriginalFilesService.xml]: Bean instantiation via constructor failed; nested exception is org.springframework.beans.BeanInstantiationException: Failed to instantiate [ome.io.nio.OriginalFilesService]: Constructor threw exception; nested exception is java.lang.IllegalArgumentException: Invalid directory specified for file system service./nfs/omero/idr-repo/omero-server
	at org.springframework.beans.factory.access.SingletonBeanFactoryLocator.useBeanFactory(SingletonBeanFactoryLocator.java:404) ~[spring-beans.jar:4.3.22.RELEASE]
	at ome.system.OmeroContext.getInstance(OmeroContext.java:202) ~[omero-common.jar:5.5.2]
	at ome.services.blitz.Entry.start(Entry.java:189) [omero-blitz.jar:5.5.3]
	at ome.services.blitz.Entry.main(Entry.java:146) [omero-blitz.jar:5.5.3]
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'OMERO.blitz' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-blitz.jar!/beanRefContext.xml]: Cannot resolve reference to bean 'ome.server' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'ome.server' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/beanRefContext.xml]: Bean instantiation via constructor failed; nested exception is org.springframework.beans.BeanInstantiationException: Failed to instantiate [ome.system.OmeroContext]: Constructor threw exception; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'ome.util.MapPut#0' defined in class path resource [ome/services/hibernate.xml]: Cannot resolve reference to bean 'fullTextIndexer' while setting bean property 'object'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'fullTextIndexer' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.api.Search.xml]: Cannot resolve reference to bean 'eventLogLoader' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'eventLogQueue' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.api.Search.xml]: Cannot resolve reference to bean 'internal-ome.api.ITypes' while setting bean property 'types'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'internal-ome.api.ITypes' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.api.ITypes.xml]: Cannot resolve reference to bean 'internal-ome.api.IUpdate' while setting bean property 'updateService'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'internal-ome.api.IUpdate' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.api.IUpdate.xml]: Cannot resolve reference to bean 'fullTextBridge' while setting bean property 'fullTextBridge'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'fullTextBridge' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.api.Search.xml]: Cannot resolve reference to bean '/OMERO/Files' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name '/OMERO/Files' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.io.nio.OriginalFilesService.xml]: Bean instantiation via constructor failed; nested exception is org.springframework.beans.BeanInstantiationException: Failed to instantiate [ome.io.nio.OriginalFilesService]: Constructor threw exception; nested exception is java.lang.IllegalArgumentException: Invalid directory specified for file system service./nfs/omero/idr-repo/omero-server
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:359) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:108) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.ConstructorResolver.resolveConstructorArguments(ConstructorResolver.java:634) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:145) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:1198) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:1100) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:511) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:481) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:312) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:308) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:202) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1086) ~[spring-context.jar:4.3.14.RELEASE]
	at org.springframework.beans.factory.access.SingletonBeanFactoryLocator.useBeanFactory(SingletonBeanFactoryLocator.java:396) ~[spring-beans.jar:4.3.22.RELEASE]
	... 3 common frames omitted
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'ome.server' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/beanRefContext.xml]: Bean instantiation via constructor failed; nested exception is org.springframework.beans.BeanInstantiationException: Failed to instantiate [ome.system.OmeroContext]: Constructor threw exception; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'ome.util.MapPut#0' defined in class path resource [ome/services/hibernate.xml]: Cannot resolve reference to bean 'fullTextIndexer' while setting bean property 'object'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'fullTextIndexer' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.api.Search.xml]: Cannot resolve reference to bean 'eventLogLoader' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'eventLogQueue' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.api.Search.xml]: Cannot resolve reference to bean 'internal-ome.api.ITypes' while setting bean property 'types'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'internal-ome.api.ITypes' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.api.ITypes.xml]: Cannot resolve reference to bean 'internal-ome.api.IUpdate' while setting bean property 'updateService'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'internal-ome.api.IUpdate' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.api.IUpdate.xml]: Cannot resolve reference to bean 'fullTextBridge' while setting bean property 'fullTextBridge'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'fullTextBridge' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.api.Search.xml]: Cannot resolve reference to bean '/OMERO/Files' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name '/OMERO/Files' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.io.nio.OriginalFilesService.xml]: Bean instantiation via constructor failed; nested exception is org.springframework.beans.BeanInstantiationException: Failed to instantiate [ome.io.nio.OriginalFilesService]: Constructor threw exception; nested exception is java.lang.IllegalArgumentException: Invalid directory specified for file system service./nfs/omero/idr-repo/omero-server
	at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:279) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:1198) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:1100) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:511) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:481) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:312) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:308) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:351) ~[spring-beans.jar:4.3.22.RELEASE]
	... 16 common frames omitted
Caused by: org.springframework.beans.BeanInstantiationException: Failed to instantiate [ome.system.OmeroContext]: Constructor threw exception; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'ome.util.MapPut#0' defined in class path resource [ome/services/hibernate.xml]: Cannot resolve reference to bean 'fullTextIndexer' while setting bean property 'object'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'fullTextIndexer' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.api.Search.xml]: Cannot resolve reference to bean 'eventLogLoader' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'eventLogQueue' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.api.Search.xml]: Cannot resolve reference to bean 'internal-ome.api.ITypes' while setting bean property 'types'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'internal-ome.api.ITypes' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.api.ITypes.xml]: Cannot resolve reference to bean 'internal-ome.api.IUpdate' while setting bean property 'updateService'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'internal-ome.api.IUpdate' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.api.IUpdate.xml]: Cannot resolve reference to bean 'fullTextBridge' while setting bean property 'fullTextBridge'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'fullTextBridge' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.api.Search.xml]: Cannot resolve reference to bean '/OMERO/Files' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name '/OMERO/Files' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.io.nio.OriginalFilesService.xml]: Bean instantiation via constructor failed; nested exception is org.springframework.beans.BeanInstantiationException: Failed to instantiate [ome.io.nio.OriginalFilesService]: Constructor threw exception; nested exception is java.lang.IllegalArgumentException: Invalid directory specified for file system service./nfs/omero/idr-repo/omero-server
	at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:154) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:122) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:271) ~[spring-beans.jar:4.3.22.RELEASE]
	... 25 common frames omitted
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'ome.util.MapPut#0' defined in class path resource [ome/services/hibernate.xml]: Cannot resolve reference to bean 'fullTextIndexer' while setting bean property 'object'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'fullTextIndexer' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.api.Search.xml]: Cannot resolve reference to bean 'eventLogLoader' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'eventLogQueue' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.api.Search.xml]: Cannot resolve reference to bean 'internal-ome.api.ITypes' while setting bean property 'types'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'internal-ome.api.ITypes' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.api.ITypes.xml]: Cannot resolve reference to bean 'internal-ome.api.IUpdate' while setting bean property 'updateService'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'internal-ome.api.IUpdate' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.api.IUpdate.xml]: Cannot resolve reference to bean 'fullTextBridge' while setting bean property 'fullTextBridge'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'fullTextBridge' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.api.Search.xml]: Cannot resolve reference to bean '/OMERO/Files' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name '/OMERO/Files' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.io.nio.OriginalFilesService.xml]: Bean instantiation via constructor failed; nested exception is org.springframework.beans.BeanInstantiationException: Failed to instantiate [ome.io.nio.OriginalFilesService]: Constructor threw exception; nested exception is java.lang.IllegalArgumentException: Invalid directory specified for file system service./nfs/omero/idr-repo/omero-server
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:359) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:108) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1534) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1281) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:551) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:481) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:312) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:308) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:761) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:867) ~[spring-context.jar:4.3.14.RELEASE]
	at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:543) ~[spring-context.jar:4.3.14.RELEASE]
	at org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:139) ~[spring-context.jar:4.3.14.RELEASE]
	at org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:105) ~[spring-context.jar:4.3.14.RELEASE]
	at ome.system.OmeroContext.<init>(OmeroContext.java:97) ~[omero-common.jar:5.5.2]
	at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) ~[na:1.8.0_222]
	at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62) ~[na:1.8.0_222]
	at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) ~[na:1.8.0_222]
	at java.lang.reflect.Constructor.newInstance(Constructor.java:423) ~[na:1.8.0_222]
	at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:142) ~[spring-beans.jar:4.3.22.RELEASE]
	... 27 common frames omitted
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'fullTextIndexer' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.api.Search.xml]: Cannot resolve reference to bean 'eventLogLoader' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'eventLogQueue' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.api.Search.xml]: Cannot resolve reference to bean 'internal-ome.api.ITypes' while setting bean property 'types'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'internal-ome.api.ITypes' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.api.ITypes.xml]: Cannot resolve reference to bean 'internal-ome.api.IUpdate' while setting bean property 'updateService'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'internal-ome.api.IUpdate' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.api.IUpdate.xml]: Cannot resolve reference to bean 'fullTextBridge' while setting bean property 'fullTextBridge'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'fullTextBridge' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.api.Search.xml]: Cannot resolve reference to bean '/OMERO/Files' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name '/OMERO/Files' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.io.nio.OriginalFilesService.xml]: Bean instantiation via constructor failed; nested exception is org.springframework.beans.BeanInstantiationException: Failed to instantiate [ome.io.nio.OriginalFilesService]: Constructor threw exception; nested exception is java.lang.IllegalArgumentException: Invalid directory specified for file system service./nfs/omero/idr-repo/omero-server
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:359) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:108) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.ConstructorResolver.resolveConstructorArguments(ConstructorResolver.java:648) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:145) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:1198) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:1100) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:511) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:481) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:312) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:308) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:351) ~[spring-beans.jar:4.3.22.RELEASE]
	... 47 common frames omitted
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'eventLogQueue' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.api.Search.xml]: Cannot resolve reference to bean 'internal-ome.api.ITypes' while setting bean property 'types'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'internal-ome.api.ITypes' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.api.ITypes.xml]: Cannot resolve reference to bean 'internal-ome.api.IUpdate' while setting bean property 'updateService'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'internal-ome.api.IUpdate' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.api.IUpdate.xml]: Cannot resolve reference to bean 'fullTextBridge' while setting bean property 'fullTextBridge'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'fullTextBridge' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.api.Search.xml]: Cannot resolve reference to bean '/OMERO/Files' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name '/OMERO/Files' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.io.nio.OriginalFilesService.xml]: Bean instantiation via constructor failed; nested exception is org.springframework.beans.BeanInstantiationException: Failed to instantiate [ome.io.nio.OriginalFilesService]: Constructor threw exception; nested exception is java.lang.IllegalArgumentException: Invalid directory specified for file system service./nfs/omero/idr-repo/omero-server
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:359) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:108) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1534) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1281) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:551) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:481) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:312) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:308) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:351) ~[spring-beans.jar:4.3.22.RELEASE]
	... 59 common frames omitted
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'internal-ome.api.ITypes' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.api.ITypes.xml]: Cannot resolve reference to bean 'internal-ome.api.IUpdate' while setting bean property 'updateService'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'internal-ome.api.IUpdate' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.api.IUpdate.xml]: Cannot resolve reference to bean 'fullTextBridge' while setting bean property 'fullTextBridge'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'fullTextBridge' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.api.Search.xml]: Cannot resolve reference to bean '/OMERO/Files' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name '/OMERO/Files' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.io.nio.OriginalFilesService.xml]: Bean instantiation via constructor failed; nested exception is org.springframework.beans.BeanInstantiationException: Failed to instantiate [ome.io.nio.OriginalFilesService]: Constructor threw exception; nested exception is java.lang.IllegalArgumentException: Invalid directory specified for file system service./nfs/omero/idr-repo/omero-server
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:359) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:108) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1534) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1281) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:551) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:481) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:312) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:308) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:351) ~[spring-beans.jar:4.3.22.RELEASE]
	... 69 common frames omitted
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'internal-ome.api.IUpdate' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.api.IUpdate.xml]: Cannot resolve reference to bean 'fullTextBridge' while setting bean property 'fullTextBridge'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'fullTextBridge' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.api.Search.xml]: Cannot resolve reference to bean '/OMERO/Files' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name '/OMERO/Files' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.io.nio.OriginalFilesService.xml]: Bean instantiation via constructor failed; nested exception is org.springframework.beans.BeanInstantiationException: Failed to instantiate [ome.io.nio.OriginalFilesService]: Constructor threw exception; nested exception is java.lang.IllegalArgumentException: Invalid directory specified for file system service./nfs/omero/idr-repo/omero-server
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:359) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:108) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1534) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1281) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:551) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:481) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:312) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:308) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:351) ~[spring-beans.jar:4.3.22.RELEASE]
	... 79 common frames omitted
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'fullTextBridge' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.api.Search.xml]: Cannot resolve reference to bean '/OMERO/Files' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name '/OMERO/Files' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.io.nio.OriginalFilesService.xml]: Bean instantiation via constructor failed; nested exception is org.springframework.beans.BeanInstantiationException: Failed to instantiate [ome.io.nio.OriginalFilesService]: Constructor threw exception; nested exception is java.lang.IllegalArgumentException: Invalid directory specified for file system service./nfs/omero/idr-repo/omero-server
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:359) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:108) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.ConstructorResolver.resolveConstructorArguments(ConstructorResolver.java:648) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:145) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:1198) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:1100) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:511) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:481) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:312) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:308) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:351) ~[spring-beans.jar:4.3.22.RELEASE]
	... 89 common frames omitted
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name '/OMERO/Files' defined in URL [jar:file:/home/omero/OMERO.server-5.5.1-ice36-b122/lib/server/omero-server.jar!/ome/services/service-ome.io.nio.OriginalFilesService.xml]: Bean instantiation via constructor failed; nested exception is org.springframework.beans.BeanInstantiationException: Failed to instantiate [ome.io.nio.OriginalFilesService]: Constructor threw exception; nested exception is java.lang.IllegalArgumentException: Invalid directory specified for file system service./nfs/omero/idr-repo/omero-server
	at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:279) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:1198) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:1100) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:511) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:481) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:312) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:308) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:351) ~[spring-beans.jar:4.3.22.RELEASE]
	... 101 common frames omitted
Caused by: org.springframework.beans.BeanInstantiationException: Failed to instantiate [ome.io.nio.OriginalFilesService]: Constructor threw exception; nested exception is java.lang.IllegalArgumentException: Invalid directory specified for file system service./nfs/omero/idr-repo/omero-server
	at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:154) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:122) ~[spring-beans.jar:4.3.22.RELEASE]
	at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:271) ~[spring-beans.jar:4.3.22.RELEASE]
	... 110 common frames omitted
Caused by: java.lang.IllegalArgumentException: Invalid directory specified for file system service./nfs/omero/idr-repo/omero-server
	at ome.io.nio.AbstractFileSystemService.<init>(AbstractFileSystemService.java:45) ~[omero-romio.jar:5.5.2]
	at ome.io.nio.OriginalFilesService.<init>(OriginalFilesService.java:44) ~[omero-romio.jar:5.5.2]
	at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) ~[na:1.8.0_222]
	at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62) ~[na:1.8.0_222]
	at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) ~[na:1.8.0_222]
	at java.lang.reflect.Constructor.newInstance(Constructor.java:423) ~[na:1.8.0_222]
	at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:142) ~[spring-beans.jar:4.3.22.RELEASE]
	... 112 common frames omitted

@mtbc
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mtbc commented Nov 1, 2019

Could there be something odd about the permissions on the directory itself?
ls -dl /nfs/omero/idr-repo/omero-server

Is the server running as the omero user or at least something in that group?

@mtbc mtbc mentioned this issue Nov 1, 2019
Merged
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@atarkowska @mtbc