diff --git a/2024/2024-07-30.md b/2024/2024-07-30.md new file mode 100644 index 0000000..c90ade7 --- /dev/null +++ b/2024/2024-07-30.md @@ -0,0 +1,71 @@ +--- +tags: Tuesday +--- + +# 2024-07-30 + +Attending: Petr, Josh, Dom, Frances, Andreas, Melissa, Jason, David Gault, Khaled, Kyle, Erin, Chris, Kevin + +Start: 2:00 pm UK + +## Accepting minutes from [last meeting](https://hackmd.io/team/ome?nav=overview) + +## Project Status + +(2-3 minutes each) + +- IDR (Frances) + - Identified 3 candidate studies for starting the challenge: + - idr0090: compound screen with 5 channels, already in Zarr v2. Looking at channel metadata + - idr0157: phenotypic plant, non-screen; not yet converted to Zarr v2. 14 organisms to explore. + - idr0044: McDole lightsheet data; partially converted to Zarr v2. Looking at chunking and sharding. + - Dom looking at this on a pilot + - Josh: pilot is slow. Dom to try a restart. + +- OMERO (Andreas) + - OMERO.web release on Monday + - Tag pushed to Docker repo + - Announcement on website + +- Bio-Formats + - David: following on from the OMERO release + - otherwise, back to PR review + - ZarrReader: integrating zarr-java beside jzarr for testing the API + - Chris: watch out with 7.3.1 due to the metadata changes + - behavior of Bio-Formats when things are missing is quite different + - good thing since things don't blow up + - files that did fail, no longer do + - Josh: re-release as 7.4? something to think about. + - David: unclear on where + - Chris: specifically, all changes of `new Double()`. new behavior + - but we don't have broken stuff in the repo that should *stay* broken + - Melissa: will find another time to follow up on that + +- NGFF (Josh) + - Challenge: + - ro-crate + - Few new PRs opened. Thoughts welcome. + - rust > ts + - various performance issues (memory & partial reads) + - script to generate? + - codecs (issues) + - "ergonomics" of the configuration (as well as the specification) leaves much to be desired + - Transforms + - https://github.com/InsightSoftwareConsortium/GetYourBrainTogether + - Hopefully PRs etc. filtering into the public soon. + +- Glencoe (Chris) + - Various releases going in + +- Community + - JRS: paper hopefully done soon + - Using OMERO for training / clinical residents (continuing education) + - e.g., archipelago makes it hard to travel + +## AOB + +(5 min. max; tech. Discussion should be highlighted to relevant people and rescheduled) + +## Main Topic + +(20-25 minutes plus 15 minutes questions max)