diff --git a/2024/2024-03-05.md b/2024/2024-03-05.md new file mode 100644 index 0000000..5bcbc37 --- /dev/null +++ b/2024/2024-03-05.md @@ -0,0 +1,72 @@ +--- +tags: Tuesday +--- + +# 2024-03-05 + +Attending: Will, David, Dom, June, Frances, Khaled, Oumou, Muhanad, Kyle, David S, Melissa, Seb, Kevin, Chris, Erin, + +Start: 2:00 pm UK + +## Accepting minutes from [last meeting](https://hackmd.io/team/ome?nav=overview) + +## Project Status + +(2-3 minutes each) + +- IDR + - prod120: idr0154, idr0155 release later today + - Will: [testing perf of NGFF](https://github.com/IDR/idr-metadata/issues/687) on idr-testing: + - Rendering images is much faster when data is on local disk (~0.4 secs) compared with S3 (~2 secs). + - David looking at reading from s3 directly + +- OMERO + - Chris: preparing security blog post + +- Bio-Formats + - Melissa: Java 21 tests now running, surprisingly passing! + +- NGFF + +- GerBI + +- Glencoe (Chris) + - OMERO.web items ongoing: + - HCS thumbnail refreshing + - OMERO.figure - no prevention of max-intensity projection + - single sign-on + - Erin: Webknosses chunking discussion blog post https://www.glencoesoftware.com/blog/2024/03/01/data-structure-ome-zarr.html + - poster https://www.glencoesoftware.com/blog/2024/03/04/SLAS.html + +- Community + - Indonesia trip in progress! + - OME meeting planning ongoing. Dates TBC + - + +## AOB + +(5 min. max; tech. Discussion should be highlighted to relevant people and rescheduled) + +## Main Topic + +Microscope metrics: +Julio Mateos Langerak, Oumou + + - Imaging to check health of the microscope + - Data is often kept in inaccessible locations + - Idea is to use OMERO to store this data + - Now have finance to implement this + - Ease of use, FAIRness etc + - Encourage core facility staff to use OMERO for their own data + - Benefits of training etc + - Packages: + - microscope-metrics: algorithms + - schema: Link-ml + - microscope-metrics-omero: Interface with OMEREO + - Seb: who will want to access the data? Users? + - Julio: yes. Publish QC data alongside experimental data + - Mapping: + - OMERO group -> microscope + - Project -> analysis over time + - Dataset +