From 8c69b17d80dcb54626e964014ecc4eb3e73ac525 Mon Sep 17 00:00:00 2001 From: Will Moore Date: Wed, 18 Sep 2024 08:46:55 +0100 Subject: [PATCH] Add 2024-09-17.md --- 2024/2024-09-17.md | 53 ++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 53 insertions(+) create mode 100644 2024/2024-09-17.md diff --git a/2024/2024-09-17.md b/2024/2024-09-17.md new file mode 100644 index 0000000..f94f144 --- /dev/null +++ b/2024/2024-09-17.md @@ -0,0 +1,53 @@ +--- +title: '2024-09-17' +tags: [Tuesday] + +--- + +--- +tags: Tuesday +--- + +# 2024-09-17 + +Attending: Will, Dom, Frances, JM, Petr, Khaled, Melissa, Seb, Kyle, Chris, Erin, Maadhav, + +Start: 2:00 pm UK + +## Accepting minutes from [last meeting](https://hackmd.io/team/ome?nav=overview) + +## Project Status + +(2-3 minutes each) + +- IDR: Frances: NGFF challenge: idr0157 converted to Zarr v3. Need to check metadata (taxonomy ID) + - Will converting other studies + - OME's deadline for conversion 20th (Friday) so we have time to organise etc by end of Sept. + +- OMERO: JM: Insight release yesterday + - omero-py released yesterday too + +- Bio-Formats Melissa: components cleanup yesterday. OME model repo has various open issues that need addressing. Will prep review for team + - Sept 30th deadline for input to next release + +- NGFF: Will: presentation https://docs.google.com/presentation/d/1sM0KDP3_uBgsj1fEtGQAv1UTIlaYdjZPcr9yFRWbMd0/edit#slide=id.p + - also working on viz of samples via web app and now via python notebook. Some issues with zarr v3 remote support: https://github.com/zarr-developers/zarr-python/pull/2186#issuecomment-2353397673 + +- GerBI + +- Glencoe + - Tables API corner cases poorly documented: Seb to open fixes + - Erin: benchmarking with new tables API. Spatial Biology meeting last week. Transcriptomics, single cell data for testing OMERO.tables. Will write blog post... + - JM: public tabular data would be useful for others to benchmark etc. + - SBI2 meeting next week, Boston. Will present HCS work + +- Community: + - Discussing installation workshop for Kobe in November + +## AOB + +(5 min. max; tech. Discussion should be highlighted to relevant people and rescheduled) + +## Main Topic + +(20-25 minutes plus 15 minutes questions max)