diff --git a/2024/2024-07-23.md b/2024/2024-07-23.md new file mode 100644 index 0000000..16d1332 --- /dev/null +++ b/2024/2024-07-23.md @@ -0,0 +1,67 @@ +--- +tags: Tuesday +--- + +# 2024-07-23 + +Attending: Frances, Dom, J-M, Seb, Josh, David, Tom, Kevin, Chris, Khaled, Andreas, Melissa, Kyle, Jason + +Start: 2:00 pm UK + +## Accepting minutes from [last meeting](https://hackmd.io/team/ome?nav=overview) + +## Project Status + +(2-3 minutes each) + +- IDR (Frances) + - working on next release, including BF fix from David, idr0043 (svs fix) + - planning to include microservice (under testing) + - targeting next week + +- OMERO + - omero-py (done), omero-web, openmicroscopy releases upcoming + - Andreas: OMERO.web: tests for tables API, if they pass then merging last couple of PRs for the next OMERO.web release (in next days) + +- Bio-Formats + - release of BF, all good + +- NGFF (Josh) + - Several DACH hackathons upcoming + - Nextflow in Tübingen in September + - SpatialData in Basel in November (limited space) + - OME-Zarr in Zürich in November + - "bioimaging interoperability" in Kassel in December + - Challenge + - dev2: [rust conversion](https://github.com/ome/ome2024-ngff-challenge/issues/7) (LDeakins) + - i.e., renewed interest in [zarr_implementations](https://github.com/zarr-developers/zarr_implementations/pull/57) (Josh) + - dev3: [REMBI metadata](https://github.com/ome/ome2024-ngff-challenge/pull/8) (Tom-TBT) + - IDR data for Challenge (Jason) + - Q: what data would IDR submit? All data is great, but depends on what's in scope, what can be used today, what's useful today? + - IDR can drive these questions. Would we contribute something for which there isn't a tool (today). Think so! Drive development/benchmarks. + - Need to figure out who is doing conversion. + - Rich datasets that may never be in a common spec. Try it out. + - FLIM: https://forum.image.sc/t/online-meeting-a-zarr-based-format-for-flim-raw-data/99244 + +- GerBI + - Josh: NFDI looking for metadata mapping use cases + - Josh: [FoundingGIDE](https://founding-gide.eurobioimaging.eu/) Update + - IDR metadata model definition, i.e., from [idr0000](https://github.com/IDR/idr0000-lastname-example/blob/master/idr0000-study_HCS.txt) + - multi-server search work (being defined). some PR cleanup first. + - [ontology landscape review](https://docs.google.com/document/d/1-36a6wtBLIq5CZlbNCmBTWToF2ODmbEFPfCswBq48Bs/edit?usp=sharing) + - hackathon in November in Japan. feel free to join :smile: + - Tom: opened a couple of PRs; nothing urgent (holidays) + - LUTs: https://github.com/search?q=org%3Aome+author%3Atom-tbt+LUTs&type=pullrequests + +- Glencoe + - preparation for SPI2 (beginning of September) + +- Community + +## AOB + +(5 min. max; tech. Discussion should be highlighted to relevant people and rescheduled) + +## Main Topic + +(20-25 minutes plus 15 minutes questions max)