diff --git a/2024/2024-02-20.md b/2024/2024-02-20.md new file mode 100644 index 0000000..69ded2c --- /dev/null +++ b/2024/2024-02-20.md @@ -0,0 +1,58 @@ +--- +tags: Tuesday +--- + +# 2024-02-20 + +Attending: Will, Dom, Frances, June, Khaled, Josh, Andreas, Erin, David, Maadhav, Kyle, Kevin, Melissa, Tom, Petr, Muhanad, + +Start: 2:00 pm UK + +## Accepting minutes from [last meeting](https://hackmd.io/team/ome?nav=overview) + +## Project Status + +(2-3 minutes each) + +- IDR (Frances): + - testing microservices + - persisting issues + - goofys mount had disappeared, led to memofile issues. + - memo files get deleted if ZarrReader or BioFormats version differs from those used to create memo files + - ZarrReader release with update that strips out structured annotations from memo file to reduce size and allow faster loading. + - Update this on idr-testing. memo file regeneration in progress + +- OMERO + +- Bio-Formats + - Melissa: discussed Java 21 yesterday. PR open to add Java 21 build to gh actions - passing! Will announce support... + +- NGFF (Josh) + - [zarr v3 rfc](https://ngff--227.org.readthedocs.build/rfc/2/index.html). Will review... + - hyper-spectral / event-based file format request from community + - store as event-based log? -> visualise as image. Needs investigation + - metadata discussions, incl. ([GIDE](https://twitter.com/GIDEproject)) BioImage Archive, Riken etc. + - What's our role? + +- GerBI (Tom) + - setting up new servers with Rocky Linux 9 etc. + - OMERO.figure testing (vite PR) + +- Glencoe (Erin) + - Thanks to Petr for help with OMERO.web testing + - Kevin/Chris looking a Zarr reading from s3 perf + - s3fs implementation of Java File system does lots of checks (permissions, metadata etc.) Can avoid these in many cases. + - Initial 2x or 3x perf improvements. Looking at RGB chunking now... + +- Community (Petr) + - Karolinska outreach - finalizing the disabled pyramid service (some users images not viewable) clarifications, good outreach though + - 7th-8th March the University Gadjah Mada Yogyakarta, Indonesia outreach + - OME community meeting dates TBD + +## AOB + +(5 min. max; tech. Discussion should be highlighted to relevant people and rescheduled) + +## Main Topic + +(20-25 minutes plus 15 minutes questions max)