update all schemas

Remi-Gau · Remi-Gau · commit a6753816ac69 · 2024-05-28T15:54:26.000+02:00
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -39,7 +39,7 @@ repos:
 
 # Checks for spelling errors
 -   repo: https://github.com/codespell-project/codespell
-    rev: v2.2.6
+    rev: v2.3.0
     hooks:
     -   id: codespell
         args: [--toml, pyproject.toml]
diff --git a/schemas/core/protocols/behavior_schema.jsonld b/schemas/core/protocols/behavior_schema.jsonld
@@ -36,7 +36,7 @@
         ]
     },
     "landingPage": {
-        "@id": "../README_eCOBIDAS-en.md",
+        "@id": "../README_eCOBIDAS-en.html",
         "inLanguage": "en"
     }
 }
diff --git a/schemas/core/protocols/data_sharing_schema.jsonld b/schemas/core/protocols/data_sharing_schema.jsonld
@@ -36,7 +36,7 @@
         ]
     },
     "landingPage": {
-        "@id": "../README_eCOBIDAS-en.md",
+        "@id": "../README_eCOBIDAS-en.html",
         "inLanguage": "en"
     }
 }
diff --git a/schemas/core/protocols/participants_schema.jsonld b/schemas/core/protocols/participants_schema.jsonld
@@ -36,7 +36,7 @@
         ]
     },
     "landingPage": {
-        "@id": "../README_eCOBIDAS-en.md",
+        "@id": "../README_eCOBIDAS-en.html",
         "inLanguage": "en"
     }
 }
diff --git a/schemas/core/protocols/reproducibility_schema.jsonld b/schemas/core/protocols/reproducibility_schema.jsonld
@@ -36,7 +36,7 @@
         ]
     },
     "landingPage": {
-        "@id": "../README_eCOBIDAS-en.md",
+        "@id": "../README_eCOBIDAS-en.html",
         "inLanguage": "en"
     }
 }
diff --git a/schemas/mri/protocols/acquisition_schema.jsonld b/schemas/mri/protocols/acquisition_schema.jsonld
@@ -36,7 +36,7 @@
         ]
     },
     "landingPage": {
-        "@id": "../README_eCOBIDAS-en.md",
+        "@id": "../README_eCOBIDAS-en.html",
         "inLanguage": "en"
     }
 }
diff --git a/schemas/mri/protocols/all_sequences_schema.jsonld b/schemas/mri/protocols/all_sequences_schema.jsonld
@@ -36,7 +36,7 @@
         ]
     },
     "landingPage": {
-        "@id": "../README_eCOBIDAS-en.md",
+        "@id": "../README_eCOBIDAS-en.html",
         "inLanguage": "en"
     }
 }
diff --git a/schemas/mri/protocols/design_schema.jsonld b/schemas/mri/protocols/design_schema.jsonld
@@ -36,7 +36,7 @@
         ]
     },
     "landingPage": {
-        "@id": "../README_eCOBIDAS-en.md",
+        "@id": "../README_eCOBIDAS-en.html",
         "inLanguage": "en"
     }
 }
diff --git a/schemas/mri/protocols/mass_univariate_schema.jsonld b/schemas/mri/protocols/mass_univariate_schema.jsonld
@@ -36,7 +36,7 @@
         ]
     },
     "landingPage": {
-        "@id": "../README_eCOBIDAS-en.md",
+        "@id": "../README_eCOBIDAS-en.html",
         "inLanguage": "en"
     }
 }
diff --git a/schemas/mri/protocols/multivariate_schema.jsonld b/schemas/mri/protocols/multivariate_schema.jsonld
@@ -36,7 +36,7 @@
         ]
     },
     "landingPage": {
-        "@id": "../README_eCOBIDAS-en.md",
+        "@id": "../README_eCOBIDAS-en.html",
         "inLanguage": "en"
     }
 }
diff --git a/schemas/mri/protocols/preprocessing_schema.jsonld b/schemas/mri/protocols/preprocessing_schema.jsonld
@@ -36,7 +36,7 @@
         ]
     },
     "landingPage": {
-        "@id": "../README_eCOBIDAS-en.md",
+        "@id": "../README_eCOBIDAS-en.html",
         "inLanguage": "en"
     }
 }
diff --git a/schemas/mri/protocols/results_schema.jsonld b/schemas/mri/protocols/results_schema.jsonld
@@ -36,7 +36,7 @@
         ]
     },
     "landingPage": {
-        "@id": "../README_eCOBIDAS-en.md",
+        "@id": "../README_eCOBIDAS-en.html",
         "inLanguage": "en"
     }
 }
diff --git a/schemas/neurovault/activities/group_inference/items/group_statistic_type.jsonld b/schemas/neurovault/activities/group_inference/items/group_statistic_type.jsonld
@@ -58,9 +58,15 @@
                     "en": "Monte Carlo Permutations"
                 },
                 "value": 6
+            },
+            {
+                "name": {
+                    "en": "other"
+                },
+                "value": 7
             }
         ],
         "minValue": 0,
-        "maxValue": 6
+        "maxValue": 7
     }
 }
diff --git a/schemas/neurovault/activities/group_modeling/items/group_estimation_type.jsonld b/schemas/neurovault/activities/group_modeling/items/group_estimation_type.jsonld
@@ -28,9 +28,15 @@
                     "en": "generalized least squares"
                 },
                 "value": 1
+            },
+            {
+                "name": {
+                    "en": "other"
+                },
+                "value": 2
             }
         ],
         "minValue": 0,
-        "maxValue": 1
+        "maxValue": 2
     }
 }
diff --git a/schemas/neurovault/activities/individual_subject_modeling/items/contrast_definition_cogatlas.jsonld b/schemas/neurovault/activities/individual_subject_modeling/items/contrast_definition_cogatlas.jsonld
@@ -15,6 +15,6 @@
         "en": "Link to Cognitive Atlas definition of this contrast"
     },
     "details": {
-        "en": "Define these in terms of task or stimulus conditions (e.g., 'one-back task with objects versus zero-back task with objects') instead of underlying psychological concepts (e.g., 'working memory')."
+        "en": "Define these in terms of task or stimulus conditions (for example 'one-back task with objects versus zero-back task with objects') instead of underlying psychological concepts (for example 'working memory')."
     }
 }
diff --git a/schemas/neurovault/activities/mri_acquisition/items/MagneticFieldStrength.jsonld b/schemas/neurovault/activities/mri_acquisition/items/MagneticFieldStrength.jsonld
@@ -17,6 +17,7 @@
     "responseOptions": {
         "valueType": "xsd:float",
         "minValue": 0,
+        "maxValue": 20,
         "unitOptions": [
             {
                 "prefLabel": {
diff --git a/schemas/neurovault/activities/mri_acquisition/items/PulseSequenceType.jsonld b/schemas/neurovault/activities/mri_acquisition/items/PulseSequenceType.jsonld
@@ -52,9 +52,15 @@
                     "en": "FLASH"
                 },
                 "value": 5
+            },
+            {
+                "name": {
+                    "en": "other"
+                },
+                "value": 6
             }
         ],
         "minValue": 0,
-        "maxValue": 5
+        "maxValue": 6
     }
 }
diff --git a/schemas/neurovault/activities/participants/items/subject_age_max.jsonld b/schemas/neurovault/activities/participants/items/subject_age_max.jsonld
@@ -16,6 +16,7 @@
     },
     "responseOptions": {
         "valueType": "xsd:float",
-        "minValue": 0
+        "minValue": 0,
+        "maxValue": 120
     }
 }
diff --git a/schemas/neurovault/activities/participants/items/subject_age_mean.jsonld b/schemas/neurovault/activities/participants/items/subject_age_mean.jsonld
@@ -16,6 +16,7 @@
     },
     "responseOptions": {
         "valueType": "xsd:float",
-        "minValue": 0
+        "minValue": 0,
+        "maxValue": 120
     }
 }
diff --git a/schemas/neurovault/activities/participants/items/subject_age_min.jsonld b/schemas/neurovault/activities/participants/items/subject_age_min.jsonld
@@ -16,6 +16,7 @@
     },
     "responseOptions": {
         "valueType": "xsd:float",
-        "minValue": 0
+        "minValue": 0,
+        "maxValue": 120
     }
 }
diff --git a/schemas/reexecution/activities/statistics/items/statistical_tools_and_versions.jsonld b/schemas/reexecution/activities/statistics/items/statistical_tools_and_versions.jsonld
@@ -0,0 +1,17 @@
+{
+    "@context": "https://raw.githubusercontent.com/ReproNim/reproschema/1.0.0-rc4/contexts/generic",
+    "@type": "reproschema:Field",
+    "@id": "statistical_tools_and_versions.jsonld",
+    "schemaVersion": "1.0.0-rc4",
+    "version": "0.0.1",
+    "prefLabel": {
+        "en": "statistical tools and versions"
+    },
+    "description": "statistical tools and versions",
+    "ui": {
+        "inputType": "textarea"
+    },
+    "question": {
+        "en": "List the tools and versions indicated (i.e. Stata 5.0).  If more than one tool used, use a new line for each tool."
+    }
+}
diff --git a/schemas/reexecution/activities/statistics/statistics_schema.jsonld b/schemas/reexecution/activities/statistics/statistics_schema.jsonld
@@ -15,7 +15,7 @@
         "shuffle": false,
         "order": [
             "items/statistical_tools_specified.jsonld",
-            "items/statitical_tools_and_versions.jsonld",
+            "items/statistical_tools_and_versions.jsonld",
             "items/statistics_OS_specified.jsonld",
             "items/statistics_OS_class.jsonld",
             "items/statistics_OS_details.jsonld",
@@ -36,10 +36,10 @@
                 ]
             },
             {
-                "variableName": "statitical_tools_and_versions",
-                "isAbout": "items/statitical_tools_and_versions.jsonld",
+                "variableName": "statistical_tools_and_versions",
+                "isAbout": "items/statistical_tools_and_versions.jsonld",
                 "prefLabel": {
-                    "en": "statitical tools and versions"
+                    "en": "statistical tools and versions"
                 },
                 "isVis": "statistical_tools_specified == 1",
                 "requiredValue": false,

Original file line number	Diff line number	Diff line change
`@@ -36,7 +36,7 @@`
`36`	`36`	`]`
`37`	`37`	`},`
`38`	`38`	`"landingPage": {`
`39`		`- "@id": "../README_eCOBIDAS-en.md",`
	`39`	`+ "@id": "../README_eCOBIDAS-en.html",`
`40`	`40`	`"inLanguage": "en"`
`41`	`41`	`}`
`42`	`42`	`}`