0.6.0

With thanks to Yaroslav Halchenko and Ilkay Isik for contributions.

• [ENH] Set threshold on up-sampling ratio in conformation, report results (#601)
• [ENH] Censor non-steady-state volumes prior to CompCor (#603)
• [FIX] Conformation failure in thick-slice, oblique T1w datasets (#601)
• [FIX] Crash/report failure of phase-difference SDC pipeline (#602, #604)
• [FIX] Prevent AFNI NIfTI extensions from crashing reference EPI estimation (#619)
• [DOC] Save logs to output directory (#605)
• [ENH] Upgrade to ICA-AROMA 0.4.1-beta (#611)

0.5.4

• [DOC] Improved report summaries describing steps taken (#584)
• [ENH] Uniformize command-line argument style (#592)

0.5.3

With thanks to Yaroslav Halchenko for contributions.

• [ENH] High-pass filter time series prior to CompCor (#577)
• [ENH] Validate and minimally conform BOLD images (#581)
• [FIX] Bug that prevented PE direction estimation (#586)
• [DOC] Log version/time in report (#587)

0.5.2

With thanks to James Kent for contributions.

• [ENH] Calculate noise components in functional data with ICA-AROMA (#539)
• [FIX] Remove unused parameters from function node, resolving crash (#576)

0.5.1

• [FIX] Invalid parameter in bbreg_wf (#572)

0.5.0

With thanks to James Kent for contributions.

• [ENH] EXPERIMENTAL: Fieldmap-less susceptibility correction with --use-syn-sdc option (#544)
• [FIX] Reduce interpolation artifacts in ConformSeries (#564)
• [FIX] Improve consistency of handling of fieldmaps (#565)
• [FIX] Apply T2w pial surface refinement at correct stage of FreeSurfer pipeline (#568)
• [ENH] Add --anat-only workflow option (#560)
• [FIX] Output all tissue class/probability maps (#569)
• [ENH] Upgrade to ANTs 2.2.0 (#561)

0.4.6

• [ENH] Conform and minimally resample multiple T1w images (#545)
• [FIX] Return non-zero exit code on all errors (#554)
• [ENH] Improve error reporting for missing subjects (#558)

0.4.5

With thanks to Marcel Falkiewicz for contributions.

• [FIX] Correctly display help in fmriprep-docker (#533)
• [FIX] Avoid invalid symlinks when running FreeSurfer (#536)
• [ENH] Improve dependency management for users unable to use Docker/Singularity containers (#549)
• [FIX] Return correct exit code when a Function node fails (#554)

0.4.4

With thanks to Feilong Ma for contributions.

• [ENH] Option to provide a custom reference grid image (--output-grid-reference) for determining the field of view and resolution of output images (#480)
• [ENH] Improved EPI skull stripping and tissue contrast enhancements (#519)
• [ENH] Improve resource use estimates in FreeSurfer workflow (#506)
• [ENH] Moved missing values in the DVARS* and FramewiseDisplacement columns of the _confounds.tsv from last row to the first row (#523)
• [ENH] More robust initialization of the normalization procedure (#529)

0.4.3

• [ENH] --output-space template targets template specified by --template flag (MNI152NLin2009cAsym supported) (#498)
• [FIX] Fix a bug causing small numerical discrepancies in input data voxel size to lead to different FOV of the output files (#513)