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Plot dupRadar boxplots #68

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ewels opened this issue Aug 20, 2018 · 5 comments
Closed

Plot dupRadar boxplots #68

ewels opened this issue Aug 20, 2018 · 5 comments

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@ewels
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ewels commented Aug 20, 2018

From @ewels on March 8, 2017 9:0

The current MultiQC plot for dupRadar is a little tricky to interpret.

Instead of plotting the dotted line from this plot as is done currently:
dupradar_scatters

Plot the median values from this boxplot:
dupradar_boxplots

Needs these values extracting in the R script. Can then plot with the custom_content module if the output syntax is done properly.

Copied from original issue: SciLifeLab#81

@ewels
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ewels commented Aug 20, 2018

From @Hammarn on October 16, 2017 14:50

Is this something that we want @ewels? And should we aim to have that in the next milestone?

@ewels
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ewels commented Aug 20, 2018

Yes, if the data is easy to find.

@drpatelh
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Should probably move this issue to MultiQC GitHub @ewels?

@drpatelh drpatelh added this to the 3.2 milestone Jun 15, 2021
@ewels
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ewels commented Jun 16, 2021

dupRadar is not supported by MultiQC, as it's an R package and not a command line tool so does not have standardised outputs.

Currently this is handled entirely with custom content in the pipeline, is it not?

@drpatelh drpatelh removed this from the 3.2 milestone Jun 17, 2021
@edmundmiller
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Closed by #1137

@edmundmiller edmundmiller added this to the 3.14.0 milestone Apr 23, 2025
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