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Create nf-test for STARFUSION_DETECT using a junction file as input #593

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rannick opened this issue Dec 19, 2024 · 0 comments
Open

Create nf-test for STARFUSION_DETECT using a junction file as input #593

rannick opened this issue Dec 19, 2024 · 0 comments

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@rannick
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rannick commented Dec 19, 2024

Description of feature

STAR-Fusion handles 2 modes,
i) the alignment self-contained: input to STAR-Fusion is fastq files
ii) alignment executed prior to STAR-Fusion execution: input to STAR-Fusion is the junction file
Both should be tested. ii is the way the pipeline works

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