Mismatches between VCF and ROH files when running with multiple samples

[fellen31]

Description of the bug

When running with multiple samples there's a risk of mixups of VCF and ROH files between samples in:

raredisease/subworkflows/local/annotate_rhocallviz/main.nf

Line 40 in 5739525

RHOCALL_VIZ(BCFTOOLS_VIEW_UNCOMPRESS.out.vcf, BCFTOOLS_ROH.out.roh)

Should be solved with a join+multiMap e.g:

BCFTOOLS_VIEW_UNCOMPRESS.out.vcf
        .join(BCFTOOLS_ROH.out.roh)
        .multiMap { meta, vcf, roh ->
            vcf: [meta, vcf]
            roh: [meta, roh]
        }
        .set { ch_rhocall_viz_input }

    RHOCALL_VIZ(
        ch_rhocall_viz_input.vcf,
        ch_rhocall_viz_input.roh,
    )

Command used and terminal output

Relevant files

No response

System information

No response

[benstory]

I'm not sure if this is related but I noticed pretty random shuffling of VCF labels and their SV variants when running a pipeline with -resume a bunch of times (while modifying the SNV variant calling modules). So I think having checks as much as possible at multiple points in the pipeline would be ideal