diff --git a/docs/output.md b/docs/output.md index 12d79ab..665db24 100644 --- a/docs/output.md +++ b/docs/output.md @@ -155,9 +155,11 @@ Output files * `output.raxml.support` A ML tree built with RAxML-NG with support values for branches based on bootstrapping ### MultiQC + Various quality statistics are compiled from the previous outputs using the [MultiQC](https://multiqc.info/) software: #### Overall Statistics + A compilation of statistics about read content, mapping and variants ![General Statistics](images/multiqc_general_stats.png) @@ -171,7 +173,6 @@ Statistics gathered when trimming reads Statistics gathered when mapping reads ![Mapping Statistics](images/multiqc_mapping_stats.png) - #### Varinat Statistics Statistics gathered when calling variants after filtering