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‎.github/workflows/package.yml

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name: conda packaging and deployment
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on:
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workflow_dispatch:
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push:
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branches: [qa, main]
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tags: ['v*']
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jobs:
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linux:
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runs-on: ubuntu-latest
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defaults:
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run:
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shell: bash -l {0}
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steps:
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- uses: actions/checkout@v3
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- uses: conda-incubator/setup-miniconda@v2
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with:
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auto-update-conda: true
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mamba-version: "*"
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environment-file: environment.yml
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cache-environment-key: ${{ runner.os }}-env-${{ hashFiles('**/environment.yml') }}
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cache-downloads-key: ${{ runner.os }}-downloads-${{ hashFiles('**/environment.yml') }}
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- name: install additional dependencies
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run: |
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echo "installing additional dependencies from environment_development.yml"
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- name: build conda package
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run: |
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# set up environment
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cd conda.recipe
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echo "versioningit $(versioningit ../)"
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# build the package
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VERSION=$(versioningit ../) conda mambabuild --output-folder . .
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conda verify noarch/mypackagename*.tar.bz2
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- name: upload conda package to anaconda
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shell: bash -l {0}
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if: startsWith(github.ref, 'refs/tags/v')
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env:
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ANACONDA_API_TOKEN: ${{ secrets.ANACONDA_TOKEN }}
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IS_RC: ${{ contains(github.ref, 'rc') }}
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run: |
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# label is main or rc depending on the tag-name
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CONDA_LABEL="main"
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if [ "${IS_RC}" = "true" ]; then CONDA_LABEL="rc"; fi
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echo pushing ${{ github.ref }} with label $CONDA_LABEL
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anaconda upload --label $CONDA_LABEL conda.recipe/noarch/mypackagename*.tar.bz2

‎.github/workflows/unittest.yml

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name: unit-test
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on:
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workflow_dispatch:
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pull_request:
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push:
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branches: [next, qa, main]
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tags: ['v*']
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jobs:
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linux:
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runs-on: ubuntu-latest
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defaults:
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run:
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shell: bash -l {0}
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steps:
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- uses: actions/checkout@v3
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- uses: conda-incubator/setup-miniconda@v2
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with:
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auto-update-conda: true
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mamba-version: "*"
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environment-file: environment.yml
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cache-environment-key: ${{ runner.os }}-env-${{ hashFiles('**/environment.yml') }}
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cache-downloads-key: ${{ runner.os }}-downloads-${{ hashFiles('**/environment.yml') }}
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- name: install additional dependencies
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run: |
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echo "installing additional dependencies if cannot be installed from conda"
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- name: run unit tests
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run: |
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echo "running unit tests"
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python -m pytest --cov=src --cov-report=xml --cov-report=term-missing tests/
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- name: upload coverage to codecov
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uses: codecov/codecov-action@v1

‎.gitignore

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# Byte-compiled / optimized / DLL files
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__pycache__/
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*.py[cod]
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*$py.class
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# C extensions
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*.so
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# Distribution / packaging
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.Python
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build/
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develop-eggs/
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dist/
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downloads/
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eggs/
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.eggs/
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lib/
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lib64/
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parts/
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sdist/
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var/
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wheels/
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share/python-wheels/
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*.egg-info/
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.installed.cfg
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*.egg
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MANIFEST
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# PyInstaller
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# Usually these files are written by a python script from a template
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# before PyInstaller builds the exe, so as to inject date/other infos into it.
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*.manifest
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*.spec
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# Installer logs
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pip-log.txt
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pip-delete-this-directory.txt
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# Unit test / coverage reports
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htmlcov/
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.tox/
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.nox/
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.coverage
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.coverage.*
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.cache
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nosetests.xml
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coverage.xml
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*.cover
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*.py,cover
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.hypothesis/
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.pytest_cache/
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cover/
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# Translations
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*.mo
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*.pot
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# Django stuff:
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*.log
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local_settings.py
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db.sqlite3
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db.sqlite3-journal
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# Flask stuff:
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instance/
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.webassets-cache
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# Scrapy stuff:
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.scrapy
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# Sphinx documentation
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docs/_build/
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# PyBuilder
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.pybuilder/
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target/
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# Jupyter Notebook
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.ipynb_checkpoints
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# IPython
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profile_default/
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ipython_config.py
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# pyenv
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# For a library or package, you might want to ignore these files since the code is
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# intended to run in multiple environments; otherwise, check them in:
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# .python-version
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# pipenv
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# According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
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# However, in case of collaboration, if having platform-specific dependencies or dependencies
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# having no cross-platform support, pipenv may install dependencies that don't work, or not
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# install all needed dependencies.
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#Pipfile.lock
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# poetry
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# Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
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# This is especially recommended for binary packages to ensure reproducibility, and is more
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# commonly ignored for libraries.
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# https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
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#poetry.lock
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# pdm
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# Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
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#pdm.lock
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# pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it
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# in version control.
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# https://pdm.fming.dev/#use-with-ide
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.pdm.toml
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# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
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__pypackages__/
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# Celery stuff
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celerybeat-schedule
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celerybeat.pid
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# SageMath parsed files
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*.sage.py
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# Environments
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.env
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.venv
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env/
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venv/
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ENV/
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env.bak/
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venv.bak/
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# Spyder project settings
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.spyderproject
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.spyproject
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# Rope project settings
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.ropeproject
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# mkdocs documentation
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/site
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# mypy
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.mypy_cache/
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.dmypy.json
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dmypy.json
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# Pyre type checker
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.pyre/
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# pytype static type analyzer
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.pytype/
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# Cython debug symbols
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cython_debug/
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# PyCharm
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# JetBrains specific template is maintained in a separate JetBrains.gitignore that can
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# be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
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# and can be added to the global gitignore or merged into this file. For a more nuclear
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# option (not recommended) you can uncomment the following to ignore the entire idea folder.
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#.idea/

‎.pre-commit-config.yaml

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repos:
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- repo: https://github.com/pre-commit/pre-commit-hooks
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rev: v4.5.0
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hooks:
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- id: check-added-large-files
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args: [--maxkb=8192]
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- id: check-merge-conflict
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- id: check-yaml
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args: [--allow-multiple-documents]
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exclude: "conda.recipe/meta.yaml"
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- id: end-of-file-fixer
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exclude: "tests/cis_tests/.*"
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- id: trailing-whitespace
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exclude: "tests/cis_tests/.*"
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- repo: https://github.com/astral-sh/ruff-pre-commit
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rev: v0.2.2
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hooks:
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- id: ruff
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args: [--fix, --exit-non-zero-on-fix]
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exclude: "tests/cis_tests/.*"
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- id: ruff-format
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exclude: "tests/cis_tests/.*"

‎.readthedocs.yaml

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version: 2
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build:
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os: ubuntu-20.04
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tools:
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python: "mambaforge-4.10"
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sphinx:
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builder: html
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configuration: docs/conf.py
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fail_on_warning: true
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conda:
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environment: environment.yml

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