update citation [skip ci]

Author: bschilder

README.Rmd

@@ -10,6 +10,13 @@ output:
 pkg <- read.dcf("DESCRIPTION", fields = "Package")[1]
 ```
 
+## Citation 
+
+If you use ``r pkg``, please cite: 
+
+<!-- Modify this by editing the file: inst/CITATION  -->
+> `r utils::citation(pkg)$textVersion`
+
 ## Intro
 
 `rworkflows` is a suite of tools to make it easy for R developers to implement
@@ -127,13 +134,6 @@ To use certain features of `rworkflows`, you may need to set up one or more
 * `DOCKER_TOKEN` [Optional]: Allows GitHub Actions to push to a
     [DockerHub](https://hub.docker.com) account. 
 
-## Citation 
-
-If you use ``r pkg``, please cite: 
-
-<!-- Modify this by editing the file: inst/CITATION  -->
-> `r utils::citation(pkg)$textVersion`
-
 ## Acknowledgments
 `rworkflows` builds upon the work of many others, especially the following:
 

README.md

@@ -24,9 +24,19 @@ status](https://github.com/neurogenomics/rworkflows/workflows/rworkflows_dev/bad
 Authors: <i>Brian Schilder, Alan Murphy, Nathan Skene</i>  
 </h4>
 <h4>  
-README updated: <i>Dec-29-2023</i>  
+README updated: <i>Jan-02-2024</i>  
 </h4>
 
+## Citation
+
+If you use `rworkflows`, please cite:
+
+<!-- Modify this by editing the file: inst/CITATION  -->
+
+> Schilder, B.M., Murphy, A.E. & Skene, N.G. rworkflows: automating
+> reproducible practices for the R community. Nat Commun 15, 149 (2024).
+> <https://doi.org/10.1038/s41467-023-44484-5>
+
 ## Intro
 
 `rworkflows` is a suite of tools to make it easy for R developers to
@@ -181,18 +191,6 @@ Secrets](https://docs.github.com/en/actions/security-guides/encrypted-secrets):
 - `DOCKER_TOKEN` \[Optional\]: Allows GitHub Actions to push to a
   [DockerHub](https://hub.docker.com) account.
 
-## Citation
-
-If you use `rworkflows`, please cite:
-
-<!-- Modify this by editing the file: inst/CITATION  -->
-
-> Brian M. Schilder, Alan E. Murphy, & Nathan G. Skene (2023) The
-> rworkflows suite: automated continuous integration for quality
-> checking, documentation website creation, and containerised deployment
-> of R packages, *Research Square*;
-> <https://doi.org/10.21203/rs.3.rs-2399015/v1>
-
 ## Acknowledgments
 
 `rworkflows` builds upon the work of many others, especially the

inst/CITATION

@@ -3,13 +3,13 @@ citHeader("If you use rworkflows, please cite:")
 bibentry(
   bibtype = "Article",
   entry    = "Article",
-  title    = "The rworkflows suite: automated continuous integration for quality checking, documentation website creation, and containerised deployment of R packages",
+  title    = "rworkflows: automating reproducible practices for the R community.",
   author   = "Brian M. Schilder, Alan E. Murphy, Nathan G. Skene",
-  journal  = "Research Square",
-  year     = "2023",
-  volume   = "",
-  number   = "",
+  journal  = "Nature Communications",
+  year     = "2024",
+  volume   = "15",
+  number   = "149",
   pages    = "",
-  url      = "https://doi.org/10.21203/rs.3.rs-2399015/v1",
-  textVersion = paste("Brian M. Schilder, Alan E. Murphy, & Nathan G. Skene (2023) The rworkflows suite: automated continuous integration for quality checking, documentation website creation, and containerised deployment of R packages, *Research Square*; https://doi.org/10.21203/rs.3.rs-2399015/v1")
+  url      = "https://doi.org/10.1038/s41467-023-44484-5",
+  textVersion = "Schilder, B.M., Murphy, A.E. & Skene, N.G. rworkflows: automating reproducible practices for the R community. Nat Commun 15, 149 (2024). https://doi.org/10.1038/s41467-023-44484-5"
 )