bump overleaf loc

Author: bdpedigo

.gitmodules

@@ -1,3 +1,3 @@
 [submodule "overleaf"]
 	path = overleaf
-	url = ./overleaf
+	url = https://git.overleaf.com/624333a7419a0302a1f6e362

overleaf

@@ -70,18 +70,23 @@ def glue(name, var, filename, figure=False, display=False, form=None):
     if figure:
         savename = "fig:" + savename
     else:
+        # JSON
         with open(RESULTS_PATH / "glued_variables.json", "r") as f:
             variables = json.load(f)
-
         # numpy types are not json serializable
         if isinstance(var, np.generic):
             var = var.item()
-
         variables[savename] = var
-
         with open(RESULTS_PATH / "glued_variables.json", "w") as f:
             json.dump(variables, f)
 
+        # TXT
+        text = ""
+        for key, val in variables.items():
+            text += key + " " + str(val) + "\n"
+        with open(RESULTS_PATH / "glued_variables.txt", "w") as f:
+            f.write(text)
+
     default_glue(savename, var, display=display)
 
     if form == "pvalue":
@@ -90,6 +95,8 @@ def glue(name, var, filename, figure=False, display=False, form=None):
         else:
             factor = int(np.ceil(np.log10(var)))
             var = r"${<}10^{" + str(factor) + r"}$"
+    elif form == "long":
+        var = f"{var:,}"
 
     if form is not None:
         glue(

pkg/pkg/io/io.py

@@ -76,7 +76,9 @@ def get_hemisphere_indices(nodes):
 for dataset in datasets:
     adj, nodes = load_split_connectome(dataset)
     n_nodes = len(nodes)
-    glue(f"{dataset}_n_nodes", n_nodes)
+    glue(f"{dataset}_n_nodes", n_nodes, form="long")
+    n_edges = np.count_nonzero(adj)
+    glue(f"{dataset}_n_edges", n_edges, form="long")
     if RERUN_SIMS:
         left_inds, right_inds = get_hemisphere_indices(nodes)
         n_side = len(left_inds)
@@ -246,7 +248,7 @@ def draw_significance(x, xdist, y=1.02, ydist=0.03):
         [x - xdist, x - xdist, x + xdist, x + xdist],
         [y, y + ydist, y + ydist, y],
         color="dimgrey",
-        clip_on=False
+        clip_on=False,
     )
     ax.text(x, y, "*", ha="center", va="bottom", fontsize="large")
 
@@ -259,5 +261,3 @@ def draw_significance(x, xdist, y=1.02, ydist=0.03):
 ax.set_ylim((ax.get_ylim()[0], 1))
 
 gluefig("match_accuracy_comparison", fig)
-
-# %%

scripts/connectomes.py

@@ -1,5 +1,5 @@
 (cd bgm/overleaf && git pull)
 rsync -r --max-size=49m ./bgm/results/figs ./bgm/overleaf
 # python ./bgm/docs/unglue_variables.py
-# rsync ./bgm/docs/glued_variables.txt ./bgm/overleaf
+rsync ./bgm/results/glued_variables.txt ./bgm/overleaf
 (cd bgm/overleaf && git add . && git commit -m 'update figures' && git push)