update Dockerfile

Author: DininduSenanayake

docker/Dockerfile

@@ -78,7 +78,12 @@ RUN wget https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/releases/fslinstaller.
 #Make FSL Happy
 ENV FSLDIR=/usr/local/fsl
 ENV PATH=$FSLDIR/bin:$PATH
-RUN /bin/bash -c 'source /usr/local/fsl/etc/fslconf/fsl.sh'
+
+#Following is the recommended process in upstream repo to source the file. However, this only works during Dockerb build and doesn't persist during runtime
+#RUN /bin/bash -c 'source /usr/local/fsl/etc/fslconf/fsl.sh'
+#Therefore, using the following methong which will add FSL setup to system-wide profile
+RUN echo '. ${FSLDIR}/etc/fslconf/fsl.sh' >> /etc/profile.d/fsl.sh
+
 
 ENV FSLMULTIFILEQUIT=TRUE
 ENV FSLOUTPUTTYPE=NIFTI_GZ

form.yml

@@ -7,8 +7,8 @@ form:
   - wall_time
 
 attributes:
-  cpu: 2
-  memory: 4
+  cpu: 4
+  memory: 8
   wall_time:
     widget: number_field
     label: "Hours"

submit.yml.erb

@@ -17,7 +17,7 @@ script:
   native:
     container:
       name: "matai"
-      image: "ghcr.io/nesi/training-environment-jupyter-matai-app:v0.7.0"
+      image: "ghcr.io/nesi/training-environment-jupyter-matai-app:v0.8.0"
       command: ["/bin/bash","-l","<%= staged_root %>/job_script_content.sh"]
       working_dir: "<%= Etc.getpwnam(ENV['USER']).dir %>"
       restart_policy: 'OnFailure'