setup.py

import setuptools
from mutagene.version import __version__

setuptools.setup(name='mutagene',
                 version=__version__,
                 description='Mutational analysis with Python',
                 long_description=open('README.md').read().strip(),
                 long_description_content_type="text/markdown",
                 author='Alexander Goncearenco',
                 author_email='alexandr.goncearenco@nih.gov',
                 url='http://www.ncbi.nlm.nih.gov/projects/mutagene/',
                 install_requires=[
                        'bayesian-optimization',
                        'clustergrammer',
                        'numpy>=1.18',
                        'pandas>=0.25',
                        'requests',
                        'scikit-learn>=0.22',
                        'scipy>=1.4',
                        'statsmodels',
                        'pyvcf',
                        'twobitreader',
                        'tqdm'],
                 test_suite='nose.collector',
                 tests_require=[
                     'nose',
                     'pytest',
                     'pytest-cov',
                     'coverage'],
                 scripts=['bin/mutagene'],
                 # package_dir={'mutagene': 'src'},
                 packages=setuptools.find_packages(exclude=["docs", "contrib", "*.tests", "*.tests.*", "tests.*", "tests"]),
                 include_package_data=True,
                 license='Public Domain',
                 zip_safe=False,
                 keywords='bioinformatics cancer mutations',
                 classifiers=[
                     'Programming Language :: Python :: 3 :: Only',
                     "Operating System :: OS Independent",
                     'License :: Public Domain',
                     'Development Status :: 4 - Beta',
                     'Intended Audience :: Science/Research',
                     'Topic :: Scientific/Engineering :: Medical Science Apps.',
                     'Environment :: Console'
                 ])