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ENH: Add escape score etc as colorings #29

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corneliusroemer opened this issue Oct 17, 2022 · 1 comment
Open
2 of 11 tasks

ENH: Add escape score etc as colorings #29

corneliusroemer opened this issue Oct 17, 2022 · 1 comment

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@corneliusroemer
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corneliusroemer commented Oct 17, 2022 •
edited

Add colorings:

  • Escape score
  • ACE2 score
  • Composite score
  • Growth advantage modelled by Wenseleer, Gerstung, Murrell models
  • Date of 5th (non misdated) sequence or something like this
  • Total reversions
  • Diff of reversions
  • Number of S mutations
  • Diff of S mutations
  • Key RBD mutations
  • Diff of key RBD mutations
    ...

If you have further ideas, feel free to comment
@corneliusroemer
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A lot of the metadata that's suggested here is already available in https://github.com/corneliusroemer/pango-sequences

Just needs to be added to the tree as colorings - although metadata is usually only available for tips, not for internal nodes

In theory one could reconstruct ancestral sequences/internal nodes and derive things like reversions but that may not be worth it.

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