diff --git a/R/cosine.R b/R/cosine.R index 7e64c75..fbff049 100644 --- a/R/cosine.R +++ b/R/cosine.R @@ -20,8 +20,8 @@ check_coconat <- function() { #' @export #' @seealso \code{\link{neuprint_cosine_plot}} #' @examples -#' \dontrun{ -#' neuprint_cosine_matrix("/lLN2.+", grepl("PN",type), partners='in') +#' \donttest{ +#' neuprint_cosine_matrix("/DA[1-3].*PN", grepl("ORN",type), partners='in') #' } neuprint_cosine_matrix <- function(ids, ..., threshold=5, partners = c("outputs", "inputs"), @@ -106,7 +106,7 @@ neuprint_cosine_matrix <- function(ids, ..., threshold=5, #' @seealso \code{\link{neuprint_cosine_matrix}} #' @examples #' \donttest{ -#' neuprint_cosine_matrix("/DA[1-3].*PN", grepl("ORN",type), partners='in') +#' neuprint_cosine_plot("/DA[1-3].*PN", partners='in') #' } #' \dontrun{ #' # Considering all partners diff --git a/man/neuprint_cosine_matrix.Rd b/man/neuprint_cosine_matrix.Rd index 7572626..1c70d19 100644 --- a/man/neuprint_cosine_matrix.Rd +++ b/man/neuprint_cosine_matrix.Rd @@ -41,8 +41,8 @@ matrix or list of two matrices (input and output) Calculate a cosine similarity matrix for neuprint neurons } \examples{ -\dontrun{ -neuprint_cosine_matrix("/lLN2.+", grepl("PN",type), partners='in') +\donttest{ +neuprint_cosine_matrix("/DA[1-3].*PN", grepl("ORN",type), partners='in') } } \seealso{ diff --git a/man/neuprint_cosine_plot.Rd b/man/neuprint_cosine_plot.Rd index 45e63c8..91931be 100644 --- a/man/neuprint_cosine_plot.Rd +++ b/man/neuprint_cosine_plot.Rd @@ -54,7 +54,7 @@ Plot cosine clustering of neuprint/hemibrain neurons } \examples{ \donttest{ -neuprint_cosine_matrix("/DA[1-3].*PN", grepl("ORN",type), partners='in') +neuprint_cosine_plot("/DA[1-3].*PN", partners='in') } \dontrun{ # Considering all partners