--- title: 'Studies' bibliography: 'morinlab.bib' --- |Entity|Method|Paired samples|Unpaired samples|Cell lines|Example gene|Study| |:-:|:-:|:-:|:-:|:-:|:-:|:-------:| |DLBCL|Sanger|0|5|0|BCL2|[@tanakaFrequentIncidenceSomatic1992](papers/tanakaFrequentIncidenceSomatic1992.md)| |BL|Sanger|0|0|9|MYC|[@johnstonCmycHypermutationBurkitt1992](papers/johnstonCmycHypermutationBurkitt1992.md)| |DLBCL|Sanger|11|28|0|MYC|[@pasqualucciHypermutationMultipleProtooncogenes2001](papers/pasqualucciHypermutationMultipleProtooncogenes2001.md)| |BL|Sanger|0|24|0|TP53|[@wildaInactivationARFMDM2p53Pathway2004](papers/wildaInactivationARFMDM2p53Pathway2004.md)| |DLBCL|Sanger|134|0|20|PRDM1|[@pasqualucciInactivationPRDM1BLIMP12006](papers/pasqualucciInactivationPRDM1BLIMP12006.md)| |DLBCL|Sanger||||FAS|[@schollMutationsRegionFAS2007](papers/schollMutationsRegionFAS2007.md)| |DLBCL|Sanger|6|217|21|CARD11|[@lenzOncogenicCARD11Mutations2008](papers/lenzOncogenicCARD11Mutations2008.md)| |DLBCL|Sanger||||NFKBIA|[@lakeMutationsNFKBIAEncoding2009](papers/lakeMutationsNFKBIAEncoding2009.md)| |DLBCL|Sanger|0|101||TNFAIP3|[@compagnoMutationsMultipleGenes2009](papers/compagnoMutationsMultipleGenes2009.md)| |FL|Sanger|11|251|0|TNFRSF14|[@cheungAcquiredTNFRSF14Mutations2010](papers/cheungAcquiredTNFRSF14Mutations2010.md)| |DLBCL, FL|RNAseq, WGS|1|31|7|EZH2|[@morinSomaticMutationsAltering2010](papers/morinSomaticMutationsAltering2010.md)| |DLBCL|Sanger|0|382|20|MYD88|[@ngoOncogenicallyActiveMYD882011](papers/ngoOncogenicallyActiveMYD882011.md)| |DLBCL|RNAseq, WGS|14|103|10|B2M|[@morinFrequentMutationHistonemodifying2011](papers/morinFrequentMutationHistonemodifying2011.md)| |DLBCL|exome|6|92|23|CD36|[@pasqualucciAnalysisCodingGenome2011](papers/pasqualucciAnalysisCodingGenome2011.md)| |DLBCL, FL|exome|7|134|0|CREBBP|[@pasqualucciInactivatingMutationsAcetyltransferase2011](papers/pasqualucciInactivatingMutationsAcetyltransferase2011.md)| |DLBCL|exome, Sanger||||BRAF|[@tiacciBRAFMutationsHairycell2011](papers/tiacciBRAFMutationsHairycell2011.md)| |BL|RNAseq, WGS, exome||53||CCND3|[@richterRecurrentMutationID32012](papers/richterRecurrentMutationID32012.md)| |DLBCL|Sanger||||MIR142|[@kwanhianMicroRNA142Mutated202012](papers/kwanhianMicroRNA142Mutated202012.md)| |DLBCL|WGS|40|0|0|CXCR4|[@khodabakhshiRecurrentTargetsAberrant2012](papers/khodabakhshiRecurrentTargetsAberrant2012.md)| |DLBCL|exome|55|0|0|ACTB|[@lohrDiscoveryPrioritizationSomatic2012](papers/lohrDiscoveryPrioritizationSomatic2012.md)| |BL|exome|| ||ACAD9|[@loveGeneticLandscapeMutations2012](papers/loveGeneticLandscapeMutations2012.md)| |BL|RNAseq||||C16orf48|[@schmitzBurkittLymphomaPathogenesis2012](papers/schmitzBurkittLymphomaPathogenesis2012.md)| |DLBCL|exome|34|39| 21|ARID1A|[@zhangGeneticHeterogeneityDiffuse2013](papers/zhangGeneticHeterogeneityDiffuse2013.md)| |DLBCL|Sanger|0|0| 6|EBF1|[@bohleRoleEarlyBcell2013](papers/bohleRoleEarlyBcell2013.md)| |DLBCL|WGS|40|0|13|ABI3BP|[@morinMutationalStructuralAnalysis2013](papers/morinMutationalStructuralAnalysis2013.md)| |BL|Sanger||||ARHGEF1|[@muppidiLossSignalingGa132014](papers/muppidiLossSignalingGa132014.md)| |BL|RNAseq|0|20 |0|CCNF|[@abateDistinctViralMutational2015](papers/abateDistinctViralMutational2015.md)| |DLBCL|Sanger|24|0|0 |STAT6|[@yildizActivatingSTAT6Mutations2015](papers/yildizActivatingSTAT6Mutations2015.md)| |DLBCL|Sanger||||MAP2K1|[@shinBRAFV600EMAP2K12015](papers/shinBRAFV600EMAP2K12015.md)| |DLBCL|exome|14|0|0|XPO1|[@mareschalWholeExomeSequencing2016](papers/mareschalWholeExomeSequencing2016.md)| |FL|WGS|5|0|0|ATP6AP1|[@okosunRecurrentMTORC1activatingRRAGC2016](papers/okosunRecurrentMTORC1activatingRRAGC2016.md)| |FL|exome|22|0 |0|MAP2K1|[@louissaintPediatrictypeNodalFollicular2016](papers/louissaintPediatrictypeNodalFollicular2016.md)| |DLBCL|exome|38|0|0 |NFKBIE|[@morinGeneticLandscapesRelapsed2016](papers/morinGeneticLandscapesRelapsed2016.md)| |FL|exome|61|69 |0|ARID1A|[@krysiakRecurrentSomaticMutations2017](papers/krysiakRecurrentSomaticMutations2017.md)| |DLBCL|exome|96|0 |0|BTK|[@albuquerqueEnhancingKnowledgeDiscovery2017](papers/albuquerqueEnhancingKnowledgeDiscovery2017.md)| |DLBCL|exome|400|601|0|ANKRD17|[@reddyGeneticFunctionalDrivers2017](papers/reddyGeneticFunctionalDrivers2017.md)| |DLBCL|exome|137|167 |0|CCL4|[@chapuyMolecularSubtypesDiffuse2018](papers/chapuyMolecularSubtypesDiffuse2018.md)| |DLBCL|WGS|153|0| 0|AICDA|[@arthurGenomewideDiscoverySomatic2018](papers/arthurGenomewideDiscoverySomatic2018.md)| |DLBCL|exome|48|526|0|CXCR5|[@schmitzGeneticsPathogenesisDiffuse2018](papers/schmitzGeneticsPathogenesisDiffuse2018.md)| |BL|exome|0|74 |0|KMT2C|[@zhouSporadicEndemicBurkitt2019](papers/zhouSporadicEndemicBurkitt2019.md)| |BL|RNAseq, exome|101|0| 0|ALPK2|[@paneaWholeGenomeLandscape2019](papers/paneaWholeGenomeLandscape2019.md)| |BL|WGS|106|0| 0|BACH2|[@grandeGenomewideDiscoverySomatic2019](papers/grandeGenomewideDiscoverySomatic2019.md)| |FL|panel|0|305| 0|CTSS|[@barariaCathepsinAlterationsInduce2020](papers/barariaCathepsinAlterationsInduce2020.md)| |DLBCL|exome, panel|135|0 |0|MS4A1|[@rushtonGeneticEvolutionaryPatterns2020](papers/rushtonGeneticEvolutionaryPatterns2020.md)| |DLBCL|WGS|179|2 |0|ACTG1|[@hubschmannMutationalMechanismsShaping2021](papers/hubschmannMutationalMechanismsShaping2021.md)| |BL|panel|0|298|0|ADAMTS5|[@burkhardtClinicalRelevanceMolecular2022](papers/burkhardtClinicalRelevanceMolecular2022.md)| |BL|WGS|193|82|22|CDKN2C|[@thomasGeneticSubgroupsInform2023](papers/thomasGeneticSubgroupsInform2023.md)| |FL|exome, panel|0|370| 0|ABL2|[@russler-germainMutationsAssociatedProgression2023](papers/russler-germainMutationsAssociatedProgression2023.md)| # References