Merge pull request #56 from morinlab/lhilton-fread-maf

lkhilton · web-flow · commit ffdaa80ab74b · 2025-01-21T14:28:22.000-08:00
Bug fix: Allow mafs with varying column headers to be loaded without error
diff --git a/R/fread_maf.R b/R/fread_maf.R
@@ -165,7 +165,7 @@ fread_maf = function(maf_file_path,
     file = maf_file_path,
     col_types = colClasses
     ) %>%
-    dplyr::select(all_of(select_cols))
+    dplyr::select(any_of(select_cols))
 
   return(maf_df)
 }

Original file line number	Diff line number	Diff line change
`@@ -165,7 +165,7 @@ fread_maf = function(maf_file_path,`
`165`	`165`	`file = maf_file_path,`
`166`	`166`	`col_types = colClasses`
`167`	`167`	`) %>%`
`168`		`- dplyr::select(all_of(select_cols))`
	`168`	`+ dplyr::select(any_of(select_cols))`
`169`	`169`
`170`	`170`	`return(maf_df)`
`171`	`171`	`}`