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Update bin
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bin/combine_biom_files.rb

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bin/rails

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#!/usr/bin/env ruby
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begin
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load File.expand_path('../spring', __FILE__)
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rescue LoadError => e
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raise unless e.message.include?('spring')
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end
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APP_PATH = File.expand_path('../config/application', __dir__)
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require_relative '../config/boot'
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require 'rails/commands'

bin/rake

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#!/usr/bin/env ruby
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begin
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load File.expand_path('../spring', __FILE__)
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rescue LoadError => e
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raise unless e.message.include?('spring')
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end
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require_relative '../config/boot'
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require 'rake'
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Rake.application.run

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