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Error in Monarch app #99

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hrshdhgd opened this issue Sep 12, 2023 · 0 comments
Open

Error in Monarch app #99

hrshdhgd opened this issue Sep 12, 2023 · 0 comments

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@hrshdhgd
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ch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api    | 2023-09-12 15:28:51.138 | DEBUG    | monarch_py.implementations.oak.oak_implementation:compare:46 - Comparing ['HP:0003394', 'HP:0003771', 'HP:0012378', 'HP:0012450', 'HP:0000974', 'HP:0001027', 'HP:0001030', 'HP:0001065', 'HP:0001073', 'HP:0001075', 'HP:0002761', 'HP:0001386', 'HP:0001537', 'HP:0001622', 'HP:0001760', 'HP:0001762', 'HP:0001763', 'HP:0001788', 'HP:0002035', 'HP:0002036', 'HP:0002616', 'HP:0002650', 'HP:0002758', 'HP:0002827', 'HP:0002829', 'HP:0002999', 'HP:0003010', 'HP:0003083', 'HP:0003834', 'HP:0000938', 'HP:0001058', 'HP:0001252', 'HP:0001324', 'HP:0002013', 'HP:0002018', 'HP:0002020', 'HP:0000015', 'HP:0000023', 'HP:0000139', 'HP:0000286', 'HP:0000481', 'HP:0000978', 'HP:0000993', 'HP:0001063', 'HP:0004872', 'HP:0004944', 'HP:0004947', 'HP:0001270', 'HP:0005294', 'HP:0006243', 'HP:0007495', 'HP:0009763', 'HP:0010749', 'HP:0010750', 'HP:0010754', 'HP:0025014', 'HP:0025019', 'HP:0025509', 'HP:0030009', 'HP:0031364', 'HP:0031653', 'HP:0001278', 'HP:0001634', 'HP:0001653', 'HP:0001704', 'HP:0002315'] to ['HP:0003645', 'HP:0005261', 'HP:0002758', 'HP:0003125', 'HP:0001892', 'HP:0001934', 'HP:0000967', 'HP:0000978', 'HP:0000979', 'HP:0040242', 'HP:0007420', 'HP:0030140', 'HP:0001386', 'HP:0002829', 'HP:0002239', 'HP:0011889', 'HP:0001907', 'HP:0012223', 'HP:0009811', 'HP:0012233', 'HP:0030746', 'HP:0002170'] using ['rdfs:subClassOf', 'BFO:0000050', 'UPHENO:0000001']
monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api    | thread '<unnamed>' panicked at 'called `Result::unwrap()` on an `Err` value: PoisonError { .. }', src/lib.rs:396:44
monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api    | ERROR:    Exception in ASGI application
monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api    | Traceback (most recent call last):
monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api    |   File "/opt/monarch-app/backend/.venv/lib/python3.9/site-packages/uvicorn/protocols/http/httptools_impl.py", line 419, in run_asgi
monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api    |     result = await app(  # type: ignore[func-returns-value]
monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api    |   File "/opt/monarch-app/backend/.venv/lib/python3.9/site-packages/uvicorn/middleware/proxy_headers.py", line 78, in __call__
monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api    |     return await self.app(scope, receive, send)
monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api    |   File "/opt/monarch-app/backend/.venv/lib/python3.9/site-packages/fastapi/applications.py", line 270, in __call__
monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api    |     await super().__call__(scope, receive, send)
monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api    |   File "/opt/monarch-app/backend/.venv/lib/python3.9/site-packages/starlette/applications.py", line 124, in __call__
monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api    |     await self.middleware_stack(scope, receive, send)
monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api    |   File "/opt/monarch-app/backend/.venv/lib/python3.9/site-packages/starlette/middleware/errors.py", line 162, in __call__
monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api    |     await self.app(scope, receive, _send)
monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api    |   File "/opt/monarch-app/backend/.venv/lib/python3.9/site-packages/starlette/middleware/cors.py", line 92, in __call__
monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api    |     await self.simple_response(scope, receive, send, request_headers=headers)
monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api    |   File "/opt/monarch-app/backend/.venv/lib/python3.9/site-packages/starlette/middleware/cors.py", line 147, in simple_response
monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api    |     await self.app(scope, receive, send)
monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api    |   File "/opt/monarch-app/backend/.venv/lib/python3.9/site-packages/starlette/middleware/exceptions.py", line 68, in __call__
monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api    |     await self.app(scope, receive, sender)
monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api    |   File "/opt/monarch-app/backend/.venv/lib/python3.9/site-packages/fastapi/middleware/asyncexitstack.py", line 18, in __call__
monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api    |     await self.app(scope, receive, send)
monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api    |   File "/opt/monarch-app/backend/.venv/lib/python3.9/site-packages/starlette/routing.py", line 706, in __call__
monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api    |     await route.handle(scope, receive, send)
monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api    |   File "/opt/monarch-app/backend/.venv/lib/python3.9/site-packages/starlette/routing.py", line 276, in handle
monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api    |     await self.app(scope, receive, send)
monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api    |   File "/opt/monarch-app/backend/.venv/lib/python3.9/site-packages/starlette/routing.py", line 66, in app
monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api    |     response = await func(request)
monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api    |   File "/opt/monarch-app/backend/.venv/lib/python3.9/site-packages/fastapi/routing.py", line 235, in app
monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api    |     raw_response = await run_endpoint_function(
monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api    |   File "/opt/monarch-app/backend/.venv/lib/python3.9/site-packages/fastapi/routing.py", line 163, in run_endpoint_function
monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api    |     return await run_in_threadpool(dependant.call, **values)
monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api    |   File "/opt/monarch-app/backend/.venv/lib/python3.9/site-packages/starlette/concurrency.py", line 41, in run_in_threadpool
monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api    |     return await anyio.to_thread.run_sync(func, *args)
monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api    |   File "/opt/monarch-app/backend/.venv/lib/python3.9/site-packages/anyio/to_thread.py", line 33, in run_sync
monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api    |     return await get_asynclib().run_sync_in_worker_thread(
monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api    |   File "/opt/monarch-app/backend/.venv/lib/python3.9/site-packages/anyio/_backends/_asyncio.py", line 877, in run_sync_in_worker_thread
monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api    |     return await future
monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api    |   File "/opt/monarch-app/backend/.venv/lib/python3.9/site-packages/anyio/_backends/_asyncio.py", line 807, in run
monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api    |     result = context.run(func, *args)
monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api    |   File "/opt/monarch-app/backend/src/monarch_py/api/semsim.py", line 53, in _post_compare
monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api    |     return oak().compare(subjects, objects)
monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api    |   File "/opt/monarch-app/backend/src/monarch_py/implementations/oak/oak_implementation.py", line 48, in compare
monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api    |     response = self.semsim.termset_pairwise_similarity(
monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api    |   File "/opt/monarch-app/backend/.venv/lib/python3.9/site-packages/oaklib/implementations/semsimian/semsimian_implementation.py", line 248, in termset_pairwise_similarity
monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api    |     semsimian_tsps = semsimian.termset_pairwise_similarity(set(subjects), set(objects))
monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api    | pyo3_runtime.PanicException: called `Result::unwrap()` on an `Err` value: PoisonError { .. }
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