We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
ch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api | 2023-09-12 15:28:51.138 | DEBUG | monarch_py.implementations.oak.oak_implementation:compare:46 - Comparing ['HP:0003394', 'HP:0003771', 'HP:0012378', 'HP:0012450', 'HP:0000974', 'HP:0001027', 'HP:0001030', 'HP:0001065', 'HP:0001073', 'HP:0001075', 'HP:0002761', 'HP:0001386', 'HP:0001537', 'HP:0001622', 'HP:0001760', 'HP:0001762', 'HP:0001763', 'HP:0001788', 'HP:0002035', 'HP:0002036', 'HP:0002616', 'HP:0002650', 'HP:0002758', 'HP:0002827', 'HP:0002829', 'HP:0002999', 'HP:0003010', 'HP:0003083', 'HP:0003834', 'HP:0000938', 'HP:0001058', 'HP:0001252', 'HP:0001324', 'HP:0002013', 'HP:0002018', 'HP:0002020', 'HP:0000015', 'HP:0000023', 'HP:0000139', 'HP:0000286', 'HP:0000481', 'HP:0000978', 'HP:0000993', 'HP:0001063', 'HP:0004872', 'HP:0004944', 'HP:0004947', 'HP:0001270', 'HP:0005294', 'HP:0006243', 'HP:0007495', 'HP:0009763', 'HP:0010749', 'HP:0010750', 'HP:0010754', 'HP:0025014', 'HP:0025019', 'HP:0025509', 'HP:0030009', 'HP:0031364', 'HP:0031653', 'HP:0001278', 'HP:0001634', 'HP:0001653', 'HP:0001704', 'HP:0002315'] to ['HP:0003645', 'HP:0005261', 'HP:0002758', 'HP:0003125', 'HP:0001892', 'HP:0001934', 'HP:0000967', 'HP:0000978', 'HP:0000979', 'HP:0040242', 'HP:0007420', 'HP:0030140', 'HP:0001386', 'HP:0002829', 'HP:0002239', 'HP:0011889', 'HP:0001907', 'HP:0012223', 'HP:0009811', 'HP:0012233', 'HP:0030746', 'HP:0002170'] using ['rdfs:subClassOf', 'BFO:0000050', 'UPHENO:0000001'] monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api | thread '<unnamed>' panicked at 'called `Result::unwrap()` on an `Err` value: PoisonError { .. }', src/lib.rs:396:44 monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api | ERROR: Exception in ASGI application monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api | Traceback (most recent call last): monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api | File "/opt/monarch-app/backend/.venv/lib/python3.9/site-packages/uvicorn/protocols/http/httptools_impl.py", line 419, in run_asgi monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api | result = await app( # type: ignore[func-returns-value] monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api | File "/opt/monarch-app/backend/.venv/lib/python3.9/site-packages/uvicorn/middleware/proxy_headers.py", line 78, in __call__ monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api | return await self.app(scope, receive, send) monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api | File "/opt/monarch-app/backend/.venv/lib/python3.9/site-packages/fastapi/applications.py", line 270, in __call__ monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api | await super().__call__(scope, receive, send) monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api | File "/opt/monarch-app/backend/.venv/lib/python3.9/site-packages/starlette/applications.py", line 124, in __call__ monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api | await self.middleware_stack(scope, receive, send) monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api | File "/opt/monarch-app/backend/.venv/lib/python3.9/site-packages/starlette/middleware/errors.py", line 162, in __call__ monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api | await self.app(scope, receive, _send) monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api | File "/opt/monarch-app/backend/.venv/lib/python3.9/site-packages/starlette/middleware/cors.py", line 92, in __call__ monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api | await self.simple_response(scope, receive, send, request_headers=headers) monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api | File "/opt/monarch-app/backend/.venv/lib/python3.9/site-packages/starlette/middleware/cors.py", line 147, in simple_response monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api | await self.app(scope, receive, send) monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api | File "/opt/monarch-app/backend/.venv/lib/python3.9/site-packages/starlette/middleware/exceptions.py", line 68, in __call__ monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api | await self.app(scope, receive, sender) monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api | File "/opt/monarch-app/backend/.venv/lib/python3.9/site-packages/fastapi/middleware/asyncexitstack.py", line 18, in __call__ monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api | await self.app(scope, receive, send) monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api | File "/opt/monarch-app/backend/.venv/lib/python3.9/site-packages/starlette/routing.py", line 706, in __call__ monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api | await route.handle(scope, receive, send) monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api | File "/opt/monarch-app/backend/.venv/lib/python3.9/site-packages/starlette/routing.py", line 276, in handle monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api | await self.app(scope, receive, send) monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api | File "/opt/monarch-app/backend/.venv/lib/python3.9/site-packages/starlette/routing.py", line 66, in app monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api | response = await func(request) monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api | File "/opt/monarch-app/backend/.venv/lib/python3.9/site-packages/fastapi/routing.py", line 235, in app monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api | raw_response = await run_endpoint_function( monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api | File "/opt/monarch-app/backend/.venv/lib/python3.9/site-packages/fastapi/routing.py", line 163, in run_endpoint_function monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api | return await run_in_threadpool(dependant.call, **values) monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api | File "/opt/monarch-app/backend/.venv/lib/python3.9/site-packages/starlette/concurrency.py", line 41, in run_in_threadpool monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api | return await anyio.to_thread.run_sync(func, *args) monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api | File "/opt/monarch-app/backend/.venv/lib/python3.9/site-packages/anyio/to_thread.py", line 33, in run_sync monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api | return await get_asynclib().run_sync_in_worker_thread( monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api | File "/opt/monarch-app/backend/.venv/lib/python3.9/site-packages/anyio/_backends/_asyncio.py", line 877, in run_sync_in_worker_thread monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api | return await future monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api | File "/opt/monarch-app/backend/.venv/lib/python3.9/site-packages/anyio/_backends/_asyncio.py", line 807, in run monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api | result = context.run(func, *args) monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api | File "/opt/monarch-app/backend/src/monarch_py/api/semsim.py", line 53, in _post_compare monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api | return oak().compare(subjects, objects) monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api | File "/opt/monarch-app/backend/src/monarch_py/implementations/oak/oak_implementation.py", line 48, in compare monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api | response = self.semsim.termset_pairwise_similarity( monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api | File "/opt/monarch-app/backend/.venv/lib/python3.9/site-packages/oaklib/implementations/semsimian/semsimian_implementation.py", line 248, in termset_pairwise_similarity monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api | semsimian_tsps = semsimian.termset_pairwise_similarity(set(subjects), set(objects)) monarch-v3_api.1.tf41h6oibnny@monarch-v3-2023-08-24-api | pyo3_runtime.PanicException: called `Result::unwrap()` on an `Err` value: PoisonError { .. }
The text was updated successfully, but these errors were encountered:
No branches or pull requests
The text was updated successfully, but these errors were encountered: