diff --git a/.docs/Notebooks/mf6_data_tutorial01.py b/.docs/Notebooks/mf6_data_tutorial01.py index bb387141b..54e3d58a9 100644 --- a/.docs/Notebooks/mf6_data_tutorial01.py +++ b/.docs/Notebooks/mf6_data_tutorial01.py @@ -47,7 +47,7 @@ temp_dir = TemporaryDirectory() workspace = temp_dir.name -name = "tutorial01_mf6_data" +name = "tutorial01" # set up simulation and basic packages sim = flopy.mf6.MFSimulation(sim_name=name, sim_ws=workspace) @@ -56,7 +56,8 @@ ) flopy.mf6.ModflowIms(sim) gwf = flopy.mf6.ModflowGwf(sim, modelname=name, save_flows=True) -flopy.mf6.ModflowGwfdis(gwf, nlay=3, nrow=4, ncol=5) +botm = [30.0, 20.0, 10.0] +flopy.mf6.ModflowGwfdis(gwf, nlay=3, nrow=4, ncol=5, top=50.0, botm=botm) flopy.mf6.ModflowGwfic(gwf) flopy.mf6.ModflowGwfnpf(gwf, save_specific_discharge=True) flopy.mf6.ModflowGwfchd( diff --git a/.docs/Notebooks/mf6_mnw2_tutorial01.py b/.docs/Notebooks/mf6_mnw2_tutorial01.py index 745afbb95..6f09a523a 100644 --- a/.docs/Notebooks/mf6_mnw2_tutorial01.py +++ b/.docs/Notebooks/mf6_mnw2_tutorial01.py @@ -77,11 +77,6 @@ ) node_data -# #### convert the DataFrame to a recarray for compatibility with flopy - -node_data = node_data.to_records() -node_data - # ### Stress period information # (could also be developed externally) @@ -97,7 +92,7 @@ stress_period_data pers = stress_period_data.groupby("per") -stress_period_data = {i: pers.get_group(i).to_records() for i in [0, 1]} +stress_period_data = {i: pers.get_group(i) for i in [0, 1]} stress_period_data # ### Make ``ModflowMnw2`` package object diff --git a/.docs/Notebooks/modflow_postprocessing_example.py b/.docs/Notebooks/modflow_postprocessing_example.py index 98259ce3a..656aef5d4 100644 --- a/.docs/Notebooks/modflow_postprocessing_example.py +++ b/.docs/Notebooks/modflow_postprocessing_example.py @@ -100,7 +100,7 @@ grid, os.path.join(workspace, "heads5_rot.tif"), hdslayer, nodata=nodata ) -results = np.loadtxt(os.path.join(workspace, f"heads5_rot.asc"), skiprows=6) +results = np.loadtxt(os.path.join(workspace, "heads5_rot.asc"), skiprows=6) results[results == nodata] = np.nan plt.imshow(results) plt.colorbar() diff --git a/.docs/Notebooks/modpath7_unstructured_lateral_example.py b/.docs/Notebooks/modpath7_unstructured_lateral_example.py index 22ccf7a47..9b3f85c3b 100644 --- a/.docs/Notebooks/modpath7_unstructured_lateral_example.py +++ b/.docs/Notebooks/modpath7_unstructured_lateral_example.py @@ -436,7 +436,7 @@ sim.set_sim_path(workspace) sim.write_simulation() success, buff = sim.run_simulation(silent=True, report=True) -assert success, f"Failed to run MF6 simulation." +assert success, "Failed to run MF6 simulation." for line in buff: print(line) diff --git a/.docs/Notebooks/nwt_option_blocks_tutorial.py b/.docs/Notebooks/nwt_option_blocks_tutorial.py index f9acbb18c..0bd0d4564 100644 --- a/.docs/Notebooks/nwt_option_blocks_tutorial.py +++ b/.docs/Notebooks/nwt_option_blocks_tutorial.py @@ -183,9 +183,9 @@ options.noprint = True -# and the user can also add auxillary variables by using `options.auxillary` +# and the user can also add auxiliary variables by using `options.auxiliary` -options.auxillary = ["aux", "iface"] +options.auxiliary = ["aux", "iface"] # ### Now we can create a new wel file using this `OptionBlock` # diff --git a/.docs/Notebooks/plot_cross_section_example.py b/.docs/Notebooks/plot_cross_section_example.py index 00848cd27..e25337940 100644 --- a/.docs/Notebooks/plot_cross_section_example.py +++ b/.docs/Notebooks/plot_cross_section_example.py @@ -341,7 +341,10 @@ # Plot a shapefile of shp = os.path.join(loadpth, "gis", "bedrock_outcrop_hole_rotate14") patch_collection = mapview.plot_shapefile( - shp, edgecolor="green", linewidths=2, alpha=0.5 # facecolor='none', + shp, + edgecolor="green", + linewidths=2, + alpha=0.5, # facecolor='none', ) # Plot a shapefile of a cross-section line shp = os.path.join(loadpth, "gis", "cross_section_rotate14") diff --git a/.docs/Notebooks/plot_map_view_example.py b/.docs/Notebooks/plot_map_view_example.py index e50a65580..d52969e4f 100644 --- a/.docs/Notebooks/plot_map_view_example.py +++ b/.docs/Notebooks/plot_map_view_example.py @@ -452,7 +452,10 @@ # Plot a shapefile of shp = os.path.join(loadpth, "gis", "bedrock_outcrop_hole") patch_collection = mapview.plot_shapefile( - shp, edgecolor="green", linewidths=2, alpha=0.5 # facecolor='none', + shp, + edgecolor="green", + linewidths=2, + alpha=0.5, # facecolor='none', ) # Plot a shapefile of a cross-section line shp = os.path.join(loadpth, "gis", "cross_section") @@ -488,7 +491,10 @@ # Plot a shapefile of shp = os.path.join(loadpth, "gis", "bedrock_outcrop_hole_rotate14") patch_collection = mapview.plot_shapefile( - shp, edgecolor="green", linewidths=2, alpha=0.5 # facecolor='none', + shp, + edgecolor="green", + linewidths=2, + alpha=0.5, # facecolor='none', ) # Plot a shapefile of a cross-section line shp = os.path.join(loadpth, "gis", "cross_section_rotate14") @@ -1024,7 +1030,7 @@ def load_iverts(fname): plt.colorbar(quadmesh, shrink=0.75) # change the font type to comic sans - styles.set_font_type(family="fantasy", fontname="Comic Sans MS"), + (styles.set_font_type(family="fantasy", fontname="Comic Sans MS"),) # use styles to add a heading, xlabel, ylabel, and remove tick marks styles.heading( diff --git a/.docs/Notebooks/swi2package_example3.py b/.docs/Notebooks/swi2package_example3.py index 415df76f5..4b0486d14 100644 --- a/.docs/Notebooks/swi2package_example3.py +++ b/.docs/Notebooks/swi2package_example3.py @@ -80,7 +80,7 @@ def MergeData(ndim, zdata, tb): found.fill(False) for idx, layer in enumerate(zdata): for jdx, z in enumerate(layer): - if found[jdx] == True: + if found[jdx] is True: continue t0 = tb[idx][0] - sv t1 = tb[idx][1] + sv diff --git a/.docs/md/version_changes.md b/.docs/md/version_changes.md index 322e71e5d..d3a2a1e26 100644 --- a/.docs/md/version_changes.md +++ b/.docs/md/version_changes.md @@ -1,12 +1,66 @@ # Changelog +### Version 3.7.0 + +#### New features + +* [feat(get-modflow)](https://github.com/modflowpy/flopy/commit/4c5e2ee3ec6699f61acb04a5e7bd35407b16f9ff): Support ARM mac distributions (#2110). Committed by wpbonelli on 2024-02-19. +* [feat(get-modflow)](https://github.com/modflowpy/flopy/commit/53a94a9c6d57f8311318836b4291ac73b4b7f728): Support ARM mac nightly build (#2115). Committed by wpbonelli on 2024-02-23. +* [feat(binaryfile)](https://github.com/modflowpy/flopy/commit/5ec612a1a5b21c094bd910c9ed39f3ea5fef5084): Get budget by second package name `paknam2` (#2050). Committed by Michael Ou@SSPA on 2024-03-14. +* [feat(get-modflow)](https://github.com/modflowpy/flopy/commit/43e5178db2b52f136cab3d53cb290c2576af21ee): Support windows parallel nightly build (#2128). Committed by wpbonelli on 2024-03-22. +* [feat](https://github.com/modflowpy/flopy/commit/f75853f9fe9921c5ed1aa4e6ab4cec594338905f): Add optional custom print callable (#2121). Committed by Mike Müller on 2024-03-25. +* [feat(dis2d)](https://github.com/modflowpy/flopy/commit/18014af25dff00d659ebe30f9b5dc82da0143be3): Introduce limited support for a 2D structured grid (for overland flow) (#2131). Committed by langevin-usgs on 2024-04-01. +* [feat(vtk)](https://github.com/modflowpy/flopy/commit/3028863dc48b6eb8622b0dcd1a4918cd31547429): Improve vtk particle track export (#2132). Committed by wpbonelli on 2024-04-02. +* [feat(disv1d)](https://github.com/modflowpy/flopy/commit/4c44cb0d9d6ef02c092938dad943cdb8285f82a7): Rename DISL to DISV1D (#2133). Committed by langevin-usgs on 2024-04-02. +* [feat(disv2d)](https://github.com/modflowpy/flopy/commit/e023235ad40cd373d428ce5c1533bd0047109a96): Introduce support for a 2D vertex grid (for overland flow) (#2151). Committed by langevin-usgs on 2024-04-15. +* [feat(vtk)](https://github.com/modflowpy/flopy/commit/43cbe4762f6f339a554052a1d0d5836d863da13f): Include all arrays on pathline input (#2161). Committed by wpbonelli on 2024-04-19. +* [feat(mp7particledata)](https://github.com/modflowpy/flopy/commit/e50ab9ae4fce67db947a022da994b26150df13aa): Add localz option for PRT PRP conversions (#2166). Committed by wpbonelli on 2024-04-24. +* [feat(sim options block packages)](https://github.com/modflowpy/flopy/commit/4e1d53ac3685d9027b1ced45749c9e20d8b701d5): Support for packages declared in simulation name file's options block (#2164). Committed by spaulins-usgs on 2024-05-01. +* [feat(sim options block packages)](https://github.com/modflowpy/flopy/commit/6237cecd5f393a15857b653e030130ab4861e3a5): Support for packages declared in simulation name file's options block (#2174). Committed by spaulins-usgs on 2024-05-02. +* [feat(MfList)](https://github.com/modflowpy/flopy/commit/712221918b1f32b881244a19781d01f92d150196): Support kper field in stress period data (#2179). Committed by wpbonelli on 2024-05-04. + +#### Bug fixes + +* [fix(PRT)](https://github.com/modflowpy/flopy/commit/dda482b18a6e857ca66a44bbbd69bc3145a68060): Allow empty recarray or dataframe for output conversion fns (#2103). Committed by wpbonelli on 2024-02-19. +* [fix(gridintersect)](https://github.com/modflowpy/flopy/commit/40c03913bdf4329e8540d365ccfffe1c2bf4fccf): Gridintersect does not work for rotated vertex grids (#2107). Committed by Davíd Brakenhoff on 2024-02-20. +* [fix(str and repr)](https://github.com/modflowpy/flopy/commit/1fe51578309a693fae45d843e50aa6f9c86ad70c): Better repr and str output for transient data with multiple blocks (#2058) (#2102). Committed by scottrp on 2024-03-13. +* [fix(get_package and model_time)](https://github.com/modflowpy/flopy/commit/11f573b0341b461a584faae4fd82ea4b2bbffc69): #2117, #2118 (#2123). Committed by spaulins-usgs on 2024-03-20. +* [fix(modflow)](https://github.com/modflowpy/flopy/commit/aa9f410a4cfd2eecb9f5fa824fbf20103bf45bc0): Dataframe support was patchy in a few packages (#2136). Committed by wpbonelli on 2024-04-04. +* [fix(dependencies)](https://github.com/modflowpy/flopy/commit/0fe415058118ca67a1e02cd5e583ce589a65c9f1): Pin pyzmq >= 25.1.2 for arm macs (#2138). Committed by wpbonelli on 2024-04-05. +* [fix(empty transient data)](https://github.com/modflowpy/flopy/commit/0f14f1fdc02a34338795396549f15758e3ab2ba0): Empty first stress period block (#1091) (#2139). Committed by spaulins-usgs on 2024-04-05. +* [fix(comma delimited, scientific notation)](https://github.com/modflowpy/flopy/commit/5aaa5fff0fd9004d16f1699261ed8ef72577a67c): #2053 (#2144). Committed by spaulins-usgs on 2024-04-11. +* [fix(empty transient arrays)](https://github.com/modflowpy/flopy/commit/f4a4274ce676713614f47fc4968315ed30297b35): #2145 (#2146). Committed by spaulins-usgs on 2024-04-12. +* [fix(#2152)](https://github.com/modflowpy/flopy/commit/57cf82ebfcfabfaaf65bde88619070a20a7744ac): Improve gridintersect geometry creation for vertex grids (#2154). Committed by Davíd Brakenhoff on 2024-04-15. +* [fix(grb)](https://github.com/modflowpy/flopy/commit/30e03490e4afadda6ed155cff1c319ebd3c6d5b0): Update binary grid file reader for new grid types (#2157). Committed by langevin-usgs on 2024-04-17. +* [fix(OptionBlock)](https://github.com/modflowpy/flopy/commit/187885b4a3b9f54dbe27d568639931b8094b488e): Deprecate attribute typo 'auxillary' -> 'auxiliary' (#2159). Committed by Mike Taves on 2024-04-19. +* [fix(typos)](https://github.com/modflowpy/flopy/commit/ff82488c0105db52931730fac801fa49a504d1cf): Fixed a variety of typos throughout project (#2160). Committed by Mike Taves on 2024-04-19. +* [fix(cvfdutil)](https://github.com/modflowpy/flopy/commit/bb5461ba32a2047d7451ca53d96ab1643f47309b): Polygon area and centroid calculations now use shapely (#2165). Committed by langevin-usgs on 2024-04-23. +* [fix(gridgen)](https://github.com/modflowpy/flopy/commit/50bbd01a5bae8e80d8345c3f314cabd03df5bb22): Remove duplicate disv grid vertices #1492 (#2119). Committed by wpbonelli on 2024-05-02. +* [fix(mfmodel)](https://github.com/modflowpy/flopy/commit/8e16aab76b6e4f892fcf7031488324c3d490b75b): Fix budgetkey for transport models (#2176). Committed by wpbonelli on 2024-05-03. +* [fix(gridintersect)](https://github.com/modflowpy/flopy/commit/15d1d7f5eaf5f50455ff99a876e05c93a947aa5b): Relax cell boundary checks with np.isclose (#2173). Committed by wpbonelli on 2024-05-06. +* [fix(MFFileAccessArray)](https://github.com/modflowpy/flopy/commit/344579b9e23484cd7947948a9ca24a01e161b20e): Read_text_data_from_file modified for non-layered (#2183). Committed by langevin-usgs on 2024-05-06. +* [fix(styles)](https://github.com/modflowpy/flopy/commit/acfd0d37ec0dcb186635af8e70f8a5afbd1eadb6): Remove need for platform evaluation (#2188). Committed by jdhughes-usgs on 2024-05-09. +* [fix(get_structured_faceflows)](https://github.com/modflowpy/flopy/commit/29e247dbe464a861be8ccb4a7ad84f3c4020dd59): Fix lower face flows when idomain is -1 (#2192). Committed by vincentpost on 2024-05-17. +* [fix(tutorial, verbosity setter)](https://github.com/modflowpy/flopy/commit/7879c2f0e41299f70ec0b3b03d756feaf4f20f37): Fixed tutorial model name and verbosity setter (#2182) (#2193). Committed by scottrp on 2024-05-21. + +#### Refactoring + +* [refactor(datautil)](https://github.com/modflowpy/flopy/commit/b58a70379030d55735858201b16b2599b266ec50): In is_int/float use .item() for np arrays (#2068). Committed by wpbonelli on 2024-02-19. +* [refactor(plotting)](https://github.com/modflowpy/flopy/commit/4e6f4c1b788ec5e64559975afffbcea539def8ac): Check for user set axes limits (#2108). Committed by Joshua Larsen on 2024-02-21. +* [refactor(get_cell_vertices)](https://github.com/modflowpy/flopy/commit/00b3d1c75bcb98bd0ab99c4a9fb45cd8f829e8d3): Raise helpful messages, improve docs, add tests (#2125). Committed by Mike Taves on 2024-03-18. +* [refactor(modpathfile)](https://github.com/modflowpy/flopy/commit/77e5e1dfbadad3fac3be9bf9cf6f0de64f826f66): Toward unified particle tracking api (#2127). Committed by wpbonelli on 2024-03-28. +* [refactor(MFSimulationBase)](https://github.com/modflowpy/flopy/commit/9e87acddcf0740aac491826ef86fd45ae2304dac): Allow simulations to have no attached models (#2140). Committed by Joshua Larsen on 2024-04-06. +* [refactor(lgrutil)](https://github.com/modflowpy/flopy/commit/029a4e165caed6af760517ed7bc1f2e62e218858): Convert numpy types to builtins for np2 compat (#2158). Committed by wpbonelli on 2024-04-19. +* [refactor(mp7particledata)](https://github.com/modflowpy/flopy/commit/c7af787110eb1d984fa660c49014c999d87b0774): Match mp7 order in to_coords()/to_prp() (#2172). Committed by wpbonelli on 2024-05-01. + ### Version 3.6.0 #### New features -* [feat(Mf6Splitter)](https://github.com/modflowpy/flopy/commit/44abb51b4fb2034d94d82cf686f44c3ddf238a1f): Preserve MFSimulation version & exe_name (#2033). Committed by wpbonelli on 2023-12-07. * [feat(set all data external options)](https://github.com/modflowpy/flopy/commit/02a2f91e802185fd6b31929f99e31fecbb41c499): Additional parameters added (#2041). Committed by scottrp on 2023-12-18. * [feat(PRT)](https://github.com/modflowpy/flopy/commit/a53cda7ff8f724dfc362b432ac9be8c98cc04165): Add conversion/plotting utils for MF6 particle tracking models (#1753). Committed by wpbonelli on 2023-12-22. * [feat](https://github.com/modflowpy/flopy/commit/6899553828725a302e23b5ec787cea481ce85d59): Add static methods to read gridgen quadtreegrid files (#2061). Committed by Martin Vonk on 2024-01-17. +* [feat(GeoSpatialCollection)](https://github.com/modflowpy/flopy/commit/f8eac0feafd981d84367128a0fdf8e7e1789fa9b): Add support for GeoDataFrame objects (#2063). Committed by Joshua Larsen on 2024-01-26. +* [feat(GeoSpatialCollection)](https://github.com/modflowpy/flopy/commit/86eb092bf5f4d44cc449a458b77114dcefcbdda7): Add support for geopandas GeoSeries and GeoArray (#2085). Committed by Joshua Larsen on 2024-02-02. #### Bug fixes @@ -14,12 +68,14 @@ * [fix(gridgen)](https://github.com/modflowpy/flopy/commit/51109751cf0f6c4ebfbc70ccf0ba0ced7fabd4b8): Support arbitrary path-like for shapefiles (#2026). Committed by wpbonelli on 2023-12-04. * [fix(subpackages)](https://github.com/modflowpy/flopy/commit/788a8df62b1519a621c2721bec12f75cfb11a8d7): Fixed detection issue of subpackages in some filein records (#2025). Committed by scottrp on 2023-12-04. * [fix(recarrays with cellid)](https://github.com/modflowpy/flopy/commit/a8800396b987e676bf0710a9d52a8cdce7b4d13f): Fixes bug when setting data as recarrays with cellids (#2029). Committed by scottrp on 2023-12-05. +* [fix(Mf6Splitter)](https://github.com/modflowpy/flopy/commit/44abb51b4fb2034d94d82cf686f44c3ddf238a1f): Preserve MFSimulation version & exe_name (#2033). Committed by wpbonelli on 2023-12-07. * [fix(data storage)](https://github.com/modflowpy/flopy/commit/97da3961f531b26001e8cf55db0de45fc41befad): Added numpy type check for consistent integer and float sizes (32-bit vs 64-bit) (#2062). Committed by scottrp on 2024-01-17. * [fix(obs package loading)](https://github.com/modflowpy/flopy/commit/a017b77493482124c2f9a635bad19a0c0dfed8c9): Fixed problem with loading multiple continuous blocks (#2058) (#2064). Committed by scottrp on 2024-01-22. * [fix(particledata)](https://github.com/modflowpy/flopy/commit/ea73e0d2f52cf22511c211ea4f5dd5b0a96be69b): Support 1D numpy array for partlocs (#2074). Committed by wpbonelli on 2024-01-25. * [fix(tri2vor)](https://github.com/modflowpy/flopy/commit/1ab25fe1cd9b55a5128eaade60bd09122f82d096): Remove invalid geometries from voronoi nodes (#2076). Committed by Joshua Larsen on 2024-01-26. * [fix(MFSimulationList)](https://github.com/modflowpy/flopy/commit/f37610d1f775dbfcc935b129d76c13c407b30e3b): Fix comma spacing in error message (#2090). Committed by wpbonelli on 2024-02-04. * [fix(numpy 2.0 deprecation)](https://github.com/modflowpy/flopy/commit/ad35b8dda86959f8cdf4560934ab5f309dc28d56): Replace np.alltrue with np.all (#2088). Committed by mnfienen on 2024-02-04. +* [fix(usgcln)](https://github.com/modflowpy/flopy/commit/4ffa04e0757aabf000e6d87a33901c7265b1fa9d): add explicit second dimension to util2d.load calls (#2097). Committed by cnicol-gwlogic on 2024-02-07. #### Refactoring @@ -27,12 +83,10 @@ * [refactor(remap_array)](https://github.com/modflowpy/flopy/commit/5a4533bf115dc4876a811b11d87d353ae01da8ea): Trap for None type idomain (#2034). Committed by Joshua Larsen on 2023-12-07. * [refactor(mbase)](https://github.com/modflowpy/flopy/commit/66b18624f78f36acd587c5a5bdcd90503397c3d1): Append not prepend flopy bindir to PATH (#2037). Committed by wpbonelli on 2023-12-08. * [refactor(pyproject.toml)](https://github.com/modflowpy/flopy/commit/b94745dc4f72a4568ab084a762f4d6a1502afbfd): Add dev dependency group (#2075). Committed by wpbonelli on 2024-01-25. -* [refactor(GeoSpatialCollection)](https://github.com/modflowpy/flopy/commit/f8eac0feafd981d84367128a0fdf8e7e1789fa9b): Add support for GeoDataFrame objects (#2063). Committed by Joshua Larsen on 2024-01-26. * [refactor(contour_array)](https://github.com/modflowpy/flopy/commit/92853a95f6d38b73e561e3e155d92b75b93afb5d): Add tri_mask kwarg to parameters (#2078). Committed by Joshua Larsen on 2024-02-01. * [refactor(dependencies)](https://github.com/modflowpy/flopy/commit/da8a3bdd6ecdbced4a22054b57c45dca470ec709): Remove python-dateutil (#2080). Committed by wpbonelli on 2024-02-01. * [refactor(_plot_package_helper)](https://github.com/modflowpy/flopy/commit/cff4f2351d92ef8f894633481248b645c07f5c83): Pass kwargs to datatype helpers (#2081). Committed by Joshua Larsen on 2024-02-02. * [refactor(convert_grid)](https://github.com/modflowpy/flopy/commit/b9ca77160cab2bf0e1af1d1d17ac82f3fa6e9d84): Added offset and angrot info to conversion (#2083). Committed by Joshua Larsen on 2024-02-02. -* [refactor(GeoSpatialCollection)](https://github.com/modflowpy/flopy/commit/86eb092bf5f4d44cc449a458b77114dcefcbdda7): Add support for geopandas GeoSeries and GeoArray (#2085). Committed by Joshua Larsen on 2024-02-02. * [refactor(dependencies)](https://github.com/modflowpy/flopy/commit/391a3690c57ccf2951f7d618c1afd4168dfa0f9b): Pin numpy<2 until other reqs support it (#2092). Committed by wpbonelli on 2024-02-07. * [refactor(mf6)](https://github.com/modflowpy/flopy/commit/d3e8a2a4342766288166e2251e96721007f5217f): Update DFNS for mf6.4.3, regen/reformat .py files (#2095). Committed by wpbonelli on 2024-02-07. diff --git a/.github/workflows/commit.yml b/.github/workflows/commit.yml index b549d7e64..29da17835 100644 --- a/.github/workflows/commit.yml +++ b/.github/workflows/commit.yml @@ -61,31 +61,11 @@ jobs: pip install . pip install ".[lint]" - - name: Run isort - run: | - echo "if isort check fails update isort using" - echo " pip install isort --upgrade" - echo "and run" - echo " isort ./flopy" - echo "and then commit the changes." - isort --check --diff ./flopy - - - name: Run black - run: | - echo "if black check fails update black using" - echo " pip install black --upgrade" - echo "and run" - echo " black ./flopy" - echo "and then commit the changes." - black --check --diff ./flopy - - - name: Run flake8 - run: | - flake8 --count --show-source --exit-zero ./flopy + - name: Lint + run: ruff check . - - name: Run pylint - run: | - pylint --jobs=2 --errors-only --exit-zero ./flopy + - name: Check format + run: ruff format . --check - name: Check CITATION.cff run: | diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml index 70c9602ac..df9c1b1bb 100644 --- a/.github/workflows/release.yml +++ b/.github/workflows/release.yml @@ -63,8 +63,10 @@ jobs: python -c "import flopy; print(f'FloPy version: {flopy.__version__}')" echo "version=${ver#"v"}" >> $GITHUB_OUTPUT - - name: Lint Python files - run: python scripts/pull_request_prepare.py + - name: Lint and format Python files + run: | + ruff check . --fix + ruff format . - name: Run tests working-directory: autotest @@ -80,13 +82,9 @@ jobs: path: | ./autotest/.failed/** - - name: Run notebooks - working-directory: scripts - run: python run_notebooks.py - - name: Generate changelog id: cliff - uses: orhun/git-cliff-action@v2 + uses: orhun/git-cliff-action@v3 with: config: cliff.toml args: --verbose --unreleased --tag ${{ steps.version.outputs.version }} diff --git a/.github/workflows/rtd.yml b/.github/workflows/rtd.yml index fe3f7a98f..4192123a9 100644 --- a/.github/workflows/rtd.yml +++ b/.github/workflows/rtd.yml @@ -19,7 +19,7 @@ jobs: defaults: run: - shell: bash + shell: bash -l {0} steps: - name: Checkout flopy repo @@ -32,18 +32,22 @@ jobs: echo $GITHUB_REF echo $GITHUB_EVENT_NAME - - name: Setup Python - uses: actions/setup-python@v5 + - name: Setup Micromamba + uses: mamba-org/setup-micromamba@v1 with: - python-version: 3.8 - cache: 'pip' - cache-dependency-path: pyproject.toml + environment-file: etc/environment.yml + cache-environment: true + cache-downloads: true + create-args: >- + python=3.12 + init-shell: >- + bash + powershell - - name: Upgrade pip - run: python -m pip install --upgrade pip - - - name: Install flopy and dependencies - run: pip install ".[test, doc, optional]" + - name: Install Python dependencies + run: | + pip install --upgrade pip + pip install . - name: Workaround OpenGL issue on Linux if: runner.os == 'Linux' diff --git a/CITATION.cff b/CITATION.cff index cefe89d95..08c4554c4 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -3,8 +3,8 @@ message: If you use this software, please cite both the article from preferred-c references, and the software itself. type: software title: FloPy -version: 3.6.0 -date-released: '2024-02-08' +version: 3.7.0 +date-released: '2024-05-23' doi: 10.5066/F7BK19FH abstract: A Python package to create, run, and post-process MODFLOW-based models. repository-artifact: https://pypi.org/project/flopy diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index 1abb137f0..8fa2a129b 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -58,11 +58,11 @@ Before you submit your Pull Request (PR) consider the following guidelines: 5. Run the formatting tools from the project root: ```shell - black -v flopy - isort -v flopy + ruff check . + ruff format . ``` - Note: Pull Requests must pass format checks run on the [GitHub actions](https://github.com/modflowpy/flopy/actions) before they will be accepted. If the Pull Request fails the `lint` job in the [continuous integration](https://github.com/modflowpy/flopy/actions/workflows/commit.yml) workflow, make sure the latest versions of `black` and `isort` are installed (this may require clearing CI caches). + Note: Pull Requests must pass format checks run on the [GitHub actions](https://github.com/modflowpy/flopy/actions) before they will be accepted. If the Pull Request fails the `lint` job in the [continuous integration](https://github.com/modflowpy/flopy/actions/workflows/commit.yml) workflow, make sure the latest version of `ruff` is installed (this may require clearing CI caches). 6. Run the full FloPy test suite and ensure that all tests pass: diff --git a/DEVELOPER.md b/DEVELOPER.md index 4febe4902..dcb2f9a11 100644 --- a/DEVELOPER.md +++ b/DEVELOPER.md @@ -28,6 +28,7 @@ This document describes how to set up a FloPy development environment, run the e - [Performance testing](#performance-testing) - [Benchmarking](#benchmarking) - [Profiling](#profiling) + - [Snapshot testing](#snapshot-testing) - [Branching model](#branching-model) - [Deprecation policy](#deprecation-policy) - [Miscellaneous](#miscellaneous) @@ -212,7 +213,9 @@ Each example should create and (attempt to) dispose of its own isolated temporar To run the tests you will need `pytest` and a few plugins, including [`pytest-xdist`](https://pytest-xdist.readthedocs.io/en/latest/), [`pytest-dotenv`](https://github.com/quiqua/pytest-dotenv), and [`pytest-benchmark`](https://pytest-benchmark.readthedocs.io/en/latest/index.html). Test dependencies are specified in the `test` extras group in `pyproject.toml` (with pip, use `pip install ".[test]"`). Test dependencies are included in the Conda environment `etc/environment`. -**Note:** to prepare your code for a pull request, you will need a few more packages specified in the `lint` extras group in `pyproject.toml` (also included by default for Conda). See the docs on [submitting a pull request](CONTRIBUTING.md) for more info. +**Note:** tests require the [`modflow-devtools`](https://github.com/MODFLOW-USGS/modflow-devtools) package, which is a grab bag of utilities and `pytest` fixtures shared by FloPy, MODFLOW 6, and other related projects. If you see testing errors that don't seem related to the contents of the tests, updating to the latest `modflow-devtools` is recommended as a first troubleshooting step. + +**Note:** to prepare your code for a pull request, you will need the [`ruff`](https://docs.astral.sh/ruff/) linter/formatter, which is included in the `lint` extras group in `pyproject.toml` (also included by default for Conda). See the docs on [submitting a pull request](CONTRIBUTING.md) for more info. ### Configuring tests @@ -345,9 +348,15 @@ Profiling is [distinct](https://stackoverflow.com/a/39381805/6514033) from bench By default, `pytest-benchmark` will only print profiling results to `stdout`. If the `--benchmark-autosave` flag is provided, performance profile data will be included in the JSON files written to the `.benchmarks` save directory as described in the benchmarking section above. +### Snapshot testing + +Snapshot testing is a form of regression testing in which a "snapshot" of the results of some computation is verified and captured by the developer to be compared against when tests are subsequently run. This is accomplished with [`syrupy`](https://github.com/tophat/syrupy) via [fixtures defined in `modflow-devtools`](https://modflow-devtools.readthedocs.io/en/latest/md/snapshots.html). + +By default, tests run in comparison mode. This means a newly written test using any of the snapshot fixtures will fail until a snapshot is created. Snapshots can be created/updated by running pytest with the `--snapshot-update` flag. + ## Branching model -This project follows the [git flow](https://nvie.com/posts/a-successful-git-branching-model/): development occurs on the `develop` branch, while `main` is reserved for the state of the latest release. Development PRs are typically squashed to `develop`, to avoid merge commits. At release time, release branches are merged to `main`, and then `main` is merged back into `develop`. +This project follows the [git flow](https://nvie.com/posts/a-successful-git-branching-model/): development occurs on the `develop` branch, while `master` is reserved for the state of the latest release. Development PRs are typically squashed to `develop`, to avoid merge commits. At release time, release branches are merged to `master`, and then `master` is merged back into `develop`. ## Deprecation policy diff --git a/README.md b/README.md index 4c5fec5e8..646964b7f 100644 --- a/README.md +++ b/README.md @@ -1,7 +1,7 @@ flopy3 -### Version 3.6.0 +### Version 3.7.0 [![flopy continuous integration](https://github.com/modflowpy/flopy/actions/workflows/commit.yml/badge.svg?branch=develop)](https://github.com/modflowpy/flopy/actions/workflows/commit.yml) [![Read the Docs](https://github.com/modflowpy/flopy/actions/workflows/rtd.yml/badge.svg?branch=develop)](https://github.com/modflowpy/flopy/actions/workflows/rtd.yml) @@ -150,7 +150,7 @@ How to Cite ##### ***Software/Code citation for FloPy:*** -[Bakker, Mark, Post, Vincent, Hughes, J. D., Langevin, C. D., White, J. T., Leaf, A. T., Paulinski, S. R., Bellino, J. C., Morway, E. D., Toews, M. W., Larsen, J. D., Fienen, M. N., Starn, J. J., Brakenhoff, D. A., and Bonelli, W. P., 2024, FloPy v3.6.0: U.S. Geological Survey Software Release, 08 February 2024, https://doi.org/10.5066/F7BK19FH](https://doi.org/10.5066/F7BK19FH) +[Bakker, Mark, Post, Vincent, Hughes, J. D., Langevin, C. D., White, J. T., Leaf, A. T., Paulinski, S. R., Bellino, J. C., Morway, E. D., Toews, M. W., Larsen, J. D., Fienen, M. N., Starn, J. J., Brakenhoff, D. A., and Bonelli, W. P., 2024, FloPy v3.7.0: U.S. Geological Survey Software Release, 23 May 2024, https://doi.org/10.5066/F7BK19FH](https://doi.org/10.5066/F7BK19FH) Additional FloPy Related Publications diff --git a/autotest/__snapshots__/test_particledata/test_lrcparticledata_to_prp_1_per_face.npy b/autotest/__snapshots__/test_particledata/test_lrcparticledata_to_prp_1_per_face.npy new file mode 100644 index 000000000..16a9342cb Binary files /dev/null and b/autotest/__snapshots__/test_particledata/test_lrcparticledata_to_prp_1_per_face.npy differ diff --git a/autotest/__snapshots__/test_particledata/test_lrcparticledata_to_prp_divisions_defaults[False].npy b/autotest/__snapshots__/test_particledata/test_lrcparticledata_to_prp_divisions_defaults[False].npy new file mode 100644 index 000000000..f9177363e Binary files /dev/null and b/autotest/__snapshots__/test_particledata/test_lrcparticledata_to_prp_divisions_defaults[False].npy differ diff --git a/autotest/__snapshots__/test_particledata/test_lrcparticledata_to_prp_divisions_defaults[True].npy b/autotest/__snapshots__/test_particledata/test_lrcparticledata_to_prp_divisions_defaults[True].npy new file mode 100644 index 000000000..d52b8f7a9 Binary files /dev/null and b/autotest/__snapshots__/test_particledata/test_lrcparticledata_to_prp_divisions_defaults[True].npy differ diff --git a/autotest/conftest.py b/autotest/conftest.py index 0db0d3ec0..6f770ef54 100644 --- a/autotest/conftest.py +++ b/autotest/conftest.py @@ -1,16 +1,18 @@ import re from importlib import metadata +from io import BytesIO, StringIO from pathlib import Path from platform import system -from typing import List +from typing import List, Optional import matplotlib.pyplot as plt +import numpy as np import pytest from modflow_devtools.misc import is_in_ci # import modflow-devtools fixtures -pytest_plugins = ["modflow_devtools.fixtures"] +pytest_plugins = ["modflow_devtools.fixtures", "modflow_devtools.snapshots"] # constants @@ -142,19 +144,22 @@ def pytest_report_header(config): except metadata.PackageNotFoundError: items.append(f"{name} (not found)") lines.append("required packages: " + ", ".join(items)) - installed = [] - not_found = [] - for name in extra["optional"]: - if name in processed: - continue - processed.add(name) - try: - version = metadata.version(name) - installed.append(f"{name}-{version}") - except metadata.PackageNotFoundError: - not_found.append(name) - if installed: - lines.append("optional packages: " + ", ".join(installed)) - if not_found: - lines.append("optional packages not found: " + ", ".join(not_found)) + for optional in ["optional", "test"]: + installed = [] + not_found = [] + for name in extra[optional]: + if name in processed: + continue + processed.add(name) + try: + version = metadata.version(name) + installed.append(f"{name}-{version}") + except metadata.PackageNotFoundError: + not_found.append(name) + if installed: + lines.append(f"{optional} packages: {', '.join(installed)}") + if not_found: + lines.append( + f"{optional} packages not found: {', '.join(not_found)}" + ) return "\n".join(lines) diff --git a/autotest/pytest.ini b/autotest/pytest.ini index c94efd1f3..0bd2bad2e 100644 --- a/autotest/pytest.ini +++ b/autotest/pytest.ini @@ -15,4 +15,9 @@ markers = meta: tests run by other tests mf6: tests for MODFLOW 6 support regression: tests comparing multiple versions - slow: tests not completing in a few seconds \ No newline at end of file + slow: tests not completing in a few seconds +filterwarnings = + # from python-dateutil, used by arrow, jupyter_client, matplotlib, pandas + ignore:datetime.datetime.utcfromtimestamp + # from pandas, see https://github.com/pandas-dev/pandas/issues/54466 + ignore:\n.*Pyarrow \ No newline at end of file diff --git a/autotest/regression/conftest.py b/autotest/regression/conftest.py index 685c0f7a2..66c064645 100644 --- a/autotest/regression/conftest.py +++ b/autotest/regression/conftest.py @@ -18,10 +18,10 @@ def get_mf6_examples_path() -> Path: __mf6_examples_lock.acquire() try: if __mf6_examples_path.is_dir() and any(__mf6_examples_path.glob("*")): - print(f"Example models already exist") + print("Example models already exist") else: __mf6_examples_path.mkdir(exist_ok=True) - print(f"Downloading example models") + print("Downloading example models") download_and_unzip( url="https://github.com/MODFLOW-USGS/modflow6-examples/releases/download/current/modflow6-examples.zip", path=str(__mf6_examples_path), diff --git a/autotest/regression/test_mf6.py b/autotest/regression/test_mf6.py index 417a547e7..17824801a 100644 --- a/autotest/regression/test_mf6.py +++ b/autotest/regression/test_mf6.py @@ -42,6 +42,7 @@ ModflowGwtssm, ModflowIms, ModflowTdis, + ModflowUtlhpc, ModflowUtltas, ) from flopy.mf6.data.mfdatastorage import DataStorageType @@ -299,7 +300,7 @@ def test_np001(function_tmpdir, example_data_path): ) except FlopyException: ex = True - assert ex == True + assert ex is True kwargs = {} kwargs["xul"] = 20.5 @@ -751,7 +752,7 @@ def test_np001(function_tmpdir, example_data_path): found_cellid = True assert found_cellid - # test empty stress period + # test empty stress period and remove output well_spd = {0: [(-1, -1, -1, -2000.0), (0, 0, 7, -2.0)], 1: []} wel_package = ModflowGwfwel( model, @@ -763,6 +764,13 @@ def test_np001(function_tmpdir, example_data_path): maxbound=2, stress_period_data=well_spd, ) + oc_package = ModflowGwfoc( + model, + budget_filerecord=[("np001_mod 1.cbc",)], + head_filerecord=[("np001_mod 1.hds",)], + saverecord={0: []}, + printrecord={0: []}, + ) sim.write_simulation() found_begin = False found_end = False @@ -787,6 +795,10 @@ def test_np001(function_tmpdir, example_data_path): spath, write_headers=False, ) + # test to make sure oc empty record dictionary is set + oc = test_sim.get_model().get_package("oc") + assert oc.saverecord.empty_keys[0] is True + # test wel package wel = test_sim.get_model().get_package("wel_2") wel._filename = "np001_spd_test.wel" wel.write() @@ -855,9 +867,9 @@ def test_np002(function_tmpdir, example_data_path): sim.simulation_data.max_columns_of_data = 22 name = sim.name_file - assert name.continue_.get_data() == None - assert name.nocheck.get_data() == True - assert name.memory_print_option.get_data() == None + assert name.continue_.get_data() is None + assert name.nocheck.get_data() is True + assert name.memory_print_option.get_data() is None tdis_rc = [(6.0, 2, 1.0), (6.0, 3, 1.0)] tdis_package = ModflowTdis( @@ -1885,7 +1897,7 @@ def test005_create_tests_advgw_tidal(function_tmpdir, example_data_path): assert model.name_file.filename == "new_name.nam" package_type_dict = {} for package in model.packagelist: - if not package.package_type in package_type_dict: + if package.package_type not in package_type_dict: filename = os.path.split(package.filename)[1] assert filename == f"new_name.{package.package_type}" package_type_dict[package.package_type] = 1 @@ -1901,7 +1913,7 @@ def test005_create_tests_advgw_tidal(function_tmpdir, example_data_path): sim.rename_all_packages("all_files_same_name") package_type_dict = {} for package in model.packagelist: - if not package.package_type in package_type_dict: + if package.package_type not in package_type_dict: filename = os.path.split(package.filename)[1] assert filename == f"all_files_same_name.{package.package_type}" package_type_dict[package.package_type] = 1 @@ -1946,6 +1958,17 @@ def test005_create_tests_advgw_tidal(function_tmpdir, example_data_path): assert value[0][0] == "ghb- 2-6-10" assert found_flows and found_obs + # check model.time steady state and transient + sto_package = model.get_package("sto") + sto_package.steady_state.set_data({0: True, 1: False, 2: False, 3: False}) + sto_package.transient.set_data({0: False, 1: True, 2: True, 3: True}) + flopy.mf6.ModflowGwfdrn(model, pname="storm") + ss = model.modeltime.steady_state + assert ss[0] + assert not ss[1] + assert not ss[2] + assert not ss[3] + # clean up sim.delete_output_files() @@ -2040,7 +2063,7 @@ def test004_create_tests_bcfss(function_tmpdir, example_data_path): readasarrays=True, save_flows=True, auxiliary=[("var1", "var2")], - recharge={0: 0.004}, + recharge={0: 0.004, 1: []}, aux=aux, ) # *** test if aux works *** chk = rch_package.check() @@ -2056,6 +2079,11 @@ def test004_create_tests_bcfss(function_tmpdir, example_data_path): assert aux_out[0][1][0, 0] == 1.3 assert aux_out[1][0][0, 0] == 200.0 assert aux_out[1][1][0, 0] == 1.5 + # write test + sim.set_sim_path(function_tmpdir) + sim.write_simulation() + # update recharge + recharge = {0: 0.004, 1: 0.004} riv_period = {} riv_period_array = [] @@ -2219,10 +2247,8 @@ def test035_create_tests_fhb(function_tmpdir, example_data_path): model, storagecoefficient=True, iconvert=0, ss=0.01, sy=0.0 ) time = model.modeltime - assert ( - time.steady_state[0] == False - and time.steady_state[1] == False - and time.steady_state[2] == False + assert not ( + time.steady_state[0] or time.steady_state[1] or time.steady_state[2] ) wel_period = {0: [((0, 1, 0), "flow")]} wel_package = ModflowGwfwel( @@ -3085,7 +3111,7 @@ def test028_create_tests_sfr(function_tmpdir, example_data_path): delc=5000.0, top=top, botm=botm, - # idomain=idomain, + idomain=idomain, filename=f"{model_name}.dis", ) strt = testutils.read_std_array(os.path.join(pth, "strt.txt"), "float") @@ -3285,8 +3311,77 @@ def test028_create_tests_sfr(function_tmpdir, example_data_path): htol=10.0, ) + # test hpc package + part = [("model1", 1), ("model2", 2)] + hpc = ModflowUtlhpc( + sim, dev_log_mpi=True, partitions=part, filename="test.hpc" + ) + + assert sim.hpc.dev_log_mpi.get_data() + assert hpc.filename == "test.hpc" + part = hpc.partitions.get_data() + assert part[0][0] == "model1" + assert part[0][1] == 1 + assert part[1][0] == "model2" + assert part[1][1] == 2 + + sim.write_simulation() + sim2 = MFSimulation.load( + sim_name=test_ex_name, + version="mf6", + exe_name="mf6", + sim_ws=function_tmpdir, + ) + hpc_a = sim2.get_package("hpc") + assert hpc_a.filename == "test.hpc" + fr = sim2.name_file._hpc_filerecord.get_data() + assert fr[0][0] == "test.hpc" + assert hpc_a.dev_log_mpi.get_data() + part_a = hpc_a.partitions.get_data() + assert part_a[0][0] == "model1" + assert part_a[0][1] == 1 + assert part_a[1][0] == "model2" + assert part_a[1][1] == 2 + + sim2.remove_package(hpc_a) + sim2.set_sim_path(os.path.join(function_tmpdir, "temp")) + sim2.write_simulation() + sim3 = MFSimulation.load( + sim_name=test_ex_name, + version="mf6", + exe_name="mf6", + sim_ws=os.path.join(function_tmpdir, "temp"), + ) + hpc_n = sim3.get_package("hpc") + assert hpc_n is None + fr_2 = sim3.name_file._hpc_filerecord.get_data() + assert fr_2 is None + sim3.set_sim_path(function_tmpdir) + + hpc_data = { + "filename": "hpc_data_file.hpc", + "dev_log_mpi": True, + "partitions": part, + } + sim4 = MFSimulation( + sim_name=test_ex_name, + version="mf6", + exe_name="mf6", + sim_ws=pth, + hpc_data=hpc_data, + ) + fr_4 = sim4.name_file._hpc_filerecord.get_data() + assert fr_4[0][0] == "hpc_data_file.hpc" + assert sim4.hpc.filename == "hpc_data_file.hpc" + assert sim4.hpc.dev_log_mpi.get_data() + part = sim4.hpc.partitions.get_data() + assert part[0][0] == "model1" + assert part[0][1] == 1 + assert part[1][0] == "model2" + assert part[1][1] == 2 + # clean up - sim.delete_output_files() + sim3.delete_output_files() @requires_exe("mf6") @@ -3771,10 +3866,10 @@ def test005_advgw_tidal(function_tmpdir, example_data_path): model = sim.get_model(model_name) time = model.modeltime assert ( - time.steady_state[0] == True - and time.steady_state[1] == False - and time.steady_state[2] == False - and time.steady_state[3] == False + time.steady_state[0] + and not time.steady_state[1] + and not time.steady_state[2] + and not time.steady_state[3] ) ghb = model.get_package("ghb") obs = ghb.obs diff --git a/autotest/regression/test_mf6_examples.py b/autotest/regression/test_mf6_examples.py index a956622f9..0b652dbf5 100644 --- a/autotest/regression/test_mf6_examples.py +++ b/autotest/regression/test_mf6_examples.py @@ -2,9 +2,9 @@ from shutil import copytree import pytest -from autotest.regression.conftest import is_nested from modflow_devtools.markers import requires_exe, requires_pkg +from autotest.regression.conftest import is_nested from flopy.mf6 import MFSimulation from flopy.utils.compare import compare_heads diff --git a/autotest/regression/test_mfnwt.py b/autotest/regression/test_mfnwt.py index 4a57a8266..a7b9fbedc 100644 --- a/autotest/regression/test_mfnwt.py +++ b/autotest/regression/test_mfnwt.py @@ -1,9 +1,9 @@ import os import pytest -from autotest.conftest import get_example_data_path from modflow_devtools.markers import requires_exe +from autotest.conftest import get_example_data_path from flopy.modflow import Modflow, ModflowNwt, ModflowUpw from flopy.utils import parsenamefile from flopy.utils.compare import compare_budget, compare_heads diff --git a/autotest/regression/test_modflow.py b/autotest/regression/test_modflow.py index 84eada048..792cef2f7 100644 --- a/autotest/regression/test_modflow.py +++ b/autotest/regression/test_modflow.py @@ -4,9 +4,9 @@ from shutil import copytree import pytest -from autotest.conftest import get_example_data_path from modflow_devtools.markers import requires_exe, requires_pkg +from autotest.conftest import get_example_data_path from flopy.modflow import Modflow, ModflowOc from flopy.utils.compare import compare_budget, compare_heads @@ -394,14 +394,14 @@ def test_mf2005_lake(function_tmpdir, namfile, mf2005_test_path): fn0 = join(ws, Path(namfile).name) - # write free format files - wont run without resetting to free format - evt external file issue + # write free format files - won't run without resetting to free format - evt external file issue m.free_format_input = True # rewrite files model_ws2 = join(ws, "external") m.change_model_ws( model_ws2, reset_external=True - ) # l1b2k_bath wont run without this + ) # l1b2k_bath won't run without this m.write_input() success, buff = m.run_model() diff --git a/autotest/regression/test_swi2.py b/autotest/regression/test_swi2.py index c1d870c84..86dc3d93b 100644 --- a/autotest/regression/test_swi2.py +++ b/autotest/regression/test_swi2.py @@ -39,7 +39,7 @@ def test_mf2005swi2(function_tmpdir, swi_path, namfile): model_ws2 = os.path.join(ws, "flopy") m.change_model_ws( model_ws2, reset_external=True - ) # l1b2k_bath wont run without this + ) # l1b2k_bath won't run without this m.write_input() success, buff = m.run_model() diff --git a/autotest/test_binaryfile.py b/autotest/test_binaryfile.py index 1089e22ad..a4e5a400e 100644 --- a/autotest/test_binaryfile.py +++ b/autotest/test_binaryfile.py @@ -2,12 +2,12 @@ import numpy as np import pytest -from autotest.conftest import get_example_data_path from matplotlib import pyplot as plt from matplotlib.axes import Axes from modflow_devtools.markers import requires_exe import flopy +from autotest.conftest import get_example_data_path from flopy.modflow import Modflow from flopy.utils import ( BinaryHeader, @@ -559,3 +559,22 @@ def test_read_mf2005_freyberg(example_data_path, function_tmpdir, compact): assert len(cbb_data) == len(cbb_data_kstpkper) for i in range(len(cbb_data)): assert np.array_equal(cbb_data[i], cbb_data_kstpkper[i]) + + +def test_read_mf6_budgetfile(example_data_path): + cbb_file = ( + example_data_path + / "mf6" + / "test005_advgw_tidal" + / "expected_output" + / "AdvGW_tidal.cbc" + ) + cbb = CellBudgetFile(cbb_file) + rch_zone_1 = cbb.get_data(paknam2="rch-zone_1".upper()) + rch_zone_2 = cbb.get_data(paknam2="rch-zone_2".upper()) + rch_zone_3 = cbb.get_data(paknam2="rch-zone_3".upper()) + + # ensure there is a record for each time step + assert len(rch_zone_1) == 120 * 3 + 1 + assert len(rch_zone_2) == 120 * 3 + 1 + assert len(rch_zone_3) == 120 * 3 + 1 diff --git a/autotest/test_cbc_full3D.py b/autotest/test_cbc_full3D.py index 9f983be5d..e347a70fa 100644 --- a/autotest/test_cbc_full3D.py +++ b/autotest/test_cbc_full3D.py @@ -3,9 +3,9 @@ import numpy as np import pytest -from autotest.conftest import get_example_data_path from modflow_devtools.markers import requires_exe +from autotest.conftest import get_example_data_path from flopy.mf6 import MFSimulation, ModflowGwfoc from flopy.modflow import Modflow from flopy.utils import CellBudgetFile diff --git a/autotest/test_copy.py b/autotest/test_copy.py index 476a560ab..52072ad15 100644 --- a/autotest/test_copy.py +++ b/autotest/test_copy.py @@ -1,5 +1,4 @@ -"""Test copying of flopy objects. -""" +"""Test copying of flopy objects.""" import copy import inspect @@ -64,10 +63,10 @@ def model_is_copy(m1, m2): continue elif k not in m2.__dict__: return False - elif type(v) == bool: + elif isinstance(v, bool): if not v == v2: return False - elif type(v) in [str, int, float, dict, list]: + elif isinstance(v, (str, int, float, dict, list)): if v != v2: return False continue @@ -118,13 +117,13 @@ def package_is_copy(pk1, pk2): return False elif k not in pk2.__dict__: return False - elif type(v) == bool: + elif isinstance(v, bool): if not v == v2: return False - elif type(v) in [str, int, float, dict]: + elif isinstance(v, (str, int, float, dict)): if v != v2: return False - elif type(v) == list: + elif isinstance(v, list): for item, item2 in zip(v, v2): if not isinstance(item, MFPackage): if item != item2: diff --git a/autotest/test_export.py b/autotest/test_export.py index 1b5e607bd..fbfac0937 100644 --- a/autotest/test_export.py +++ b/autotest/test_export.py @@ -7,7 +7,6 @@ import matplotlib.pyplot as plt import numpy as np import pytest -from autotest.conftest import get_example_data_path from flaky import flaky from modflow_devtools.markers import ( excludes_platform, @@ -17,6 +16,7 @@ from modflow_devtools.misc import has_pkg import flopy +from autotest.conftest import get_example_data_path from flopy.discretization import StructuredGrid, UnstructuredGrid from flopy.export import NetCdf from flopy.export.shapefile_utils import recarray2shp, shp2recarray @@ -520,7 +520,7 @@ def test_shapefile_ibound(function_tmpdir, example_data_path): field_names = [item[0] for item in shape.fields][1:] ib_idx = field_names.index("ibound_1") txt = f"should be int instead of {type(shape.record(0)[ib_idx])}" - assert type(shape.record(0)[ib_idx]) == int, txt + assert isinstance(shape.record(0)[ib_idx], int), txt shape.close() @@ -1455,13 +1455,15 @@ def test_vtk_unstructured(function_tmpdir, unstructured_grid): @requires_pkg("vtk", "pyvista") -def test_vtk_to_pyvista(function_tmpdir, example_data_path): +def test_vtk_to_pyvista(function_tmpdir): + from pprint import pformat + from autotest.test_mp7_cases import Mp7Cases case_mf6 = Mp7Cases.mp7_mf6(function_tmpdir) case_mf6.write_input() success, buff = case_mf6.run_model() - assert success, f"MP7 model ({case_mf6.name}) failed" + assert success, f"MP7 model ({case_mf6.name}) failed: {pformat(buff)}" gwf = case_mf6.flowmodel plf = PathlineFile(Path(case_mf6.model_ws) / f"{case_mf6.name}.mppth") @@ -1479,6 +1481,9 @@ def test_vtk_to_pyvista(function_tmpdir, example_data_path): n_pts = sum([pl.shape[0] for pl in pls]) assert pathlines.n_points == n_pts assert pathlines.n_cells == n_pts + len(pls) + assert "particleid" in pathlines.point_data + assert "time" in pathlines.point_data + assert "k" in pathlines.point_data # uncomment to debug # grid.plot() @@ -1702,7 +1707,7 @@ def test_vtk_add_model_without_packages_names(function_tmpdir): @pytest.mark.mf6 -@requires_pkg("vtk") +@requires_pkg("vtk", "shapely") def test_vtk_export_disv1_model(function_tmpdir): from vtkmodules.util.numpy_support import vtk_to_numpy from vtkmodules.vtkIOLegacy import vtkUnstructuredGridReader @@ -1774,7 +1779,7 @@ def test_vtk_export_disv1_model(function_tmpdir): @pytest.mark.mf6 -@requires_pkg("vtk") +@requires_pkg("vtk", "shapely") def test_vtk_export_disv2_model(function_tmpdir): from vtkmodules.util.numpy_support import vtk_to_numpy from vtkmodules.vtkIOLegacy import vtkUnstructuredGridReader diff --git a/autotest/test_get_modflow.py b/autotest/test_get_modflow.py index ca161a04d..3a93aa7ec 100644 --- a/autotest/test_get_modflow.py +++ b/autotest/test_get_modflow.py @@ -1,7 +1,6 @@ """Test get-modflow utility.""" import os -import platform import sys from os.path import expandvars from pathlib import Path @@ -9,11 +8,11 @@ from urllib.error import HTTPError import pytest -from autotest.conftest import get_project_root_path from flaky import flaky from modflow_devtools.markers import requires_github from modflow_devtools.misc import run_py_script +from autotest.conftest import get_project_root_path from flopy.utils import get_modflow from flopy.utils.get_modflow import get_release, get_releases, select_bindir @@ -21,11 +20,9 @@ flopy_dir = get_project_root_path() get_modflow_script = flopy_dir / "flopy" / "utils" / "get_modflow.py" bindir_options = { - "flopy": ( - Path(expandvars(r"%LOCALAPPDATA%\flopy")) / "bin" - if system() == "Windows" - else Path.home() / ".local" / "share" / "flopy" / "bin" - ), + "flopy": Path(expandvars(r"%LOCALAPPDATA%\flopy")) / "bin" + if system() == "Windows" + else Path.home() / ".local" / "share" / "flopy" / "bin", "python": Path(sys.prefix) / ("Scripts" if system() == "Windows" else "bin"), "home": Path.home() / ".local" / "bin", @@ -129,6 +126,8 @@ def test_get_release(repo): assert {a.rpartition("_")[2] for a in actual_assets} >= { a for a in expected_assets if not a.startswith("win") } + elif repo == "modflow6-nightly-build": + expected_assets.append("macarm.zip") else: for ostag in expected_ostags: assert any( diff --git a/autotest/test_grid.py b/autotest/test_grid.py index 7bf27622e..d27337f37 100644 --- a/autotest/test_grid.py +++ b/autotest/test_grid.py @@ -7,19 +7,24 @@ import matplotlib import numpy as np import pytest -from autotest.test_dis_cases import case_dis, case_disv -from autotest.test_grid_cases import GridCases from flaky import flaky from matplotlib import pyplot as plt from modflow_devtools.markers import requires_exe, requires_pkg from modflow_devtools.misc import has_pkg +from autotest.test_dis_cases import case_dis, case_disv +from autotest.test_grid_cases import GridCases from flopy.discretization import StructuredGrid, UnstructuredGrid, VertexGrid from flopy.mf6 import MFSimulation from flopy.modflow import Modflow, ModflowDis from flopy.utils import import_optional_dependency from flopy.utils.crs import get_authority_crs -from flopy.utils.cvfdutil import gridlist_to_disv_gridprops, to_cvfd +from flopy.utils.cvfdutil import ( + area_of_polygon, + centroid_of_polygon, + gridlist_to_disv_gridprops, + to_cvfd, +) from flopy.utils.triangle import Triangle from flopy.utils.voronoi import VoronoiGrid @@ -145,6 +150,31 @@ def test_get_vertices(): assert np.array_equal(a1, a2) +def test_get_cell_vertices(): + m = Modflow() + _ = ModflowDis(m, nrow=40, ncol=20, delr=25.0, delc=25.0) + mg = m.modelgrid + ul = [(0.0, 1000.0), (25.0, 1000.0), (25.0, 975.0), (0.0, 975.0)] + assert mg.get_cell_vertices(0) == ul + assert mg.get_cell_vertices(0, 0) == ul + ll = [(0.0, 25.0), (25.0, 25.0), (25.0, 0.0), (0.0, 0.0)] + assert mg.get_cell_vertices(780) == ll + assert mg.get_cell_vertices(node=780) == ll + assert mg.get_cell_vertices(39, 0) == ll + assert mg.get_cell_vertices(j=0, i=39) == ll + # test exceptions + with pytest.raises(TypeError): + mg.get_cell_vertices() + with pytest.raises(TypeError): + mg.get_cell_vertices(0, 0, 0) + with pytest.raises(TypeError): + mg.get_cell_vertices(0, 0, node=0) + with pytest.raises(TypeError): + mg.get_cell_vertices(0, i=0) + with pytest.raises(TypeError): + mg.get_cell_vertices(nn=0) + + def test_get_lrc_get_node(): nlay, nrow, ncol = 3, 4, 5 nnodes = nlay * nrow * ncol @@ -502,15 +532,18 @@ def load_iverts(fname): assert g.nnodes == g.ncpl.sum() == 1090 -def test_unstructured_from_gridspec(example_data_path): +def unstructured_from_gridspec_driver(example_data_path, gsf_file): model_path = example_data_path / "freyberg_usg" - spec_path = model_path / "freyberg.usg.gsf" + spec_path = model_path / gsf_file grid = UnstructuredGrid.from_gridspec(spec_path) with open(spec_path) as file: lines = file.readlines() split = [line.strip().split() for line in lines] + # remove comments + split = [item for item in split if item[0] != "#"] + # check number of nodes nnodes = int(split[1][0]) assert len(grid.iverts) == nnodes @@ -555,6 +588,16 @@ def test_unstructured_from_gridspec(example_data_path): assert min(grid.botm) == min([xyz[2] for xyz in expected_verts]) +def test_unstructured_from_gridspec(example_data_path): + unstructured_from_gridspec_driver(example_data_path, "freyberg.usg.gsf") + + +def test_unstructured_from_gridspec_comments(example_data_path): + unstructured_from_gridspec_driver( + example_data_path, "freyberg.usg.gsf.with_comment" + ) + + @pytest.mark.parametrize( "crs,expected_srs", ( @@ -852,6 +895,7 @@ def test_grid_crs_exceptions(): sg.set_coord_info(prj=not_a_file) +@requires_pkg("shapely") def test_tocvfd1(): vertdict = {} vertdict[0] = [(0, 0), (100, 0), (100, 100), (0, 100), (0, 0)] @@ -860,6 +904,7 @@ def test_tocvfd1(): assert 6 in iverts[0] +@requires_pkg("shapely") def test_tocvfd2(): vertdict = {} vertdict[0] = [(0, 0), (1, 0), (1, 1), (0, 1), (0, 0)] @@ -868,6 +913,7 @@ def test_tocvfd2(): assert [1, 4, 5, 6, 2, 1] in iverts +@requires_pkg("shapely") def test_tocvfd3(): # create the nested grid described in the modflow-usg documentation @@ -921,6 +967,28 @@ def test_tocvfd3(): assert i == j, f"{i} not equal {j}" +@requires_pkg("shapely") +def test_area_centroid_polygon(): + pts = [ + (685053.450097303, 6295544.549730939), + (685055.8377391606, 6295545.167682521), + (685057.3028430222, 6295542.712221102), + (685055.3500302795, 6295540.907246565), + (685053.2040466429, 6295542.313082705), + (685053.450097303, 6295544.549730939), + ] + xc, yc = centroid_of_polygon(pts) + result = np.array([xc, yc]) + answer = np.array((685055.1035824707, 6295543.12059913)) + assert np.allclose( + result, answer + ), "cvfdutil centroid of polygon incorrect" + x, y = list(zip(*pts)) + result = area_of_polygon(x, y) + answer = 11.228131838368032 + assert np.allclose(result, answer), "cvfdutil area of polygon incorrect" + + def test_unstructured_grid_shell(): # constructor with no arguments. incomplete shell should exist g = UnstructuredGrid() @@ -1119,7 +1187,7 @@ def test_voronoi_grid(request, function_tmpdir, grid_info): # ensure proper number of cells almost_right = ncpl == 538 and gridprops["ncpl"] == 535 if almost_right: - warn(f"off-by-3") + warn("off-by-3") # ensure that all cells have 3 or more points invalid_cells = [i for i, ivts in enumerate(vor.iverts) if len(ivts) < 3] diff --git a/autotest/test_gridgen.py b/autotest/test_gridgen.py index a45bd3498..064bd7064 100644 --- a/autotest/test_gridgen.py +++ b/autotest/test_gridgen.py @@ -4,13 +4,14 @@ import matplotlib.pyplot as plt import numpy as np +import pandas as pd import pytest -from autotest.test_grid_cases import GridCases from matplotlib.collections import LineCollection, PathCollection, QuadMesh from modflow_devtools.markers import requires_exe, requires_pkg from modflow_devtools.misc import has_pkg import flopy +from autotest.test_grid_cases import GridCases from flopy.discretization.unstructuredgrid import UnstructuredGrid from flopy.discretization.vertexgrid import VertexGrid from flopy.utils.gridgen import Gridgen @@ -851,3 +852,104 @@ def test_gridgen(function_tmpdir): "should not be (without vertical pass through activated)." ) assert max(ja0) <= disu_vp.nodelay[0], msg + + +@requires_exe("mf6", "gridgen") +@requires_pkg("shapely", "shapefile") +def test_flopy_issue_1492(function_tmpdir): + """ + Submitted by David Brakenhoff in + https://github.com/modflowpy/flopy/issues/1492 + """ + + name = "issue1492" + nlay = 3 + nrow = 10 + ncol = 10 + delr = delc = 1.1 # <-- 1.0 converges + top = 1 + bot = 0 + dz = (top - bot) / nlay + botm = [top - k * dz for k in range(1, nlay + 1)] + + # Create a dummy model and regular grid to use as the base grid for gridgen + sim = flopy.mf6.MFSimulation( + sim_name=name, sim_ws=function_tmpdir, exe_name="mf6" + ) + gwf = flopy.mf6.ModflowGwf(sim, modelname=name) + dis = flopy.mf6.ModflowGwfdis( + gwf, + nlay=nlay, + nrow=nrow, + ncol=ncol, + delr=delr, + delc=delc, + top=top, + botm=botm, + ) + og_grid = gwf.modelgrid + + # Create and build the gridgen model + g = Gridgen(dis, model_ws=function_tmpdir) + g.build() + + # retrieve a dictionary of arguments to be passed + # directly into the flopy disv constructor + disv_gridprops = g.get_gridprops_disv() + + # find the cell numbers for constant heads + chdspd = [] + ilay = 0 + for x, y, head in [(0, 10, 1.0), (10, 0, 0.0)]: + ra = g.intersect([(x, y)], "point", ilay) + ic = ra["nodenumber"][0] + chdspd.append([(ilay, ic), head]) + + # build run and post-process the MODFLOW 6 model + sim = flopy.mf6.MFSimulation( + sim_name=name, + sim_ws=function_tmpdir, + exe_name="mf6", + verbosity_level=0, + ) + tdis = flopy.mf6.ModflowTdis(sim) + ims = flopy.mf6.ModflowIms(sim, linear_acceleration="bicgstab") + gwf = flopy.mf6.ModflowGwf(sim, modelname=name, save_flows=True) + disv = flopy.mf6.ModflowGwfdisv(gwf, **disv_gridprops) + ic = flopy.mf6.ModflowGwfic(gwf) + npf = flopy.mf6.ModflowGwfnpf( + gwf, xt3doptions=True, save_specific_discharge=True + ) + chd = flopy.mf6.ModflowGwfchd(gwf, stress_period_data=chdspd) + budget_file = name + ".bud" + head_file = name + ".hds" + oc = flopy.mf6.ModflowGwfoc( + gwf, + budget_filerecord=budget_file, + head_filerecord=head_file, + saverecord=[("HEAD", "ALL"), ("BUDGET", "ALL")], + ) + + sim.write_simulation() + success, _ = sim.run_simulation(silent=False) + assert success + + # debugging duplicate vertices + grid = gwf.modelgrid + og_verts = pd.DataFrame(og_grid.verts, columns=["x", "y"]) + mg_verts = pd.DataFrame(grid.verts, columns=["x", "y"]) + + plot_debug = False + if plot_debug: + head = gwf.output.head().get_data() + bud = gwf.output.budget() + spdis = bud.get_data(text="DATA-SPDIS")[0] + pmv = flopy.plot.PlotMapView(gwf) + pmv.plot_array(head) + pmv.plot_grid(colors="white") + ax = plt.gca() + verts = grid.verts + ax.plot(verts[:, 0], verts[:, 1], "bo", alpha=0.25, ms=5) + pmv.contour_array(head, levels=[0.2, 0.4, 0.6, 0.8], linewidths=3.0) + pmv.plot_vector(spdis["qx"], spdis["qy"], color="white") + plt.show() diff --git a/autotest/test_gridintersect.py b/autotest/test_gridintersect.py index ff61b229d..dc7a7656f 100644 --- a/autotest/test_gridintersect.py +++ b/autotest/test_gridintersect.py @@ -1205,6 +1205,10 @@ def test_point_offset_rot_structured_grid(): ix = GridIntersect(sgr, method="structured") result = ix.intersect(p) assert len(result) == 1 + # check empty result when using local model coords + ix = GridIntersect(sgr, method="structured", local=True) + result = ix.intersect(p) + assert len(result) == 0 @requires_pkg("shapely") @@ -1213,8 +1217,11 @@ def test_linestring_offset_rot_structured_grid(): ls = LineString([(5, 10.0 + np.sqrt(200.0)), (15, 10.0 + np.sqrt(200.0))]) ix = GridIntersect(sgr, method="structured") result = ix.intersect(ls) - # NOTE: in shapely 2.0, this returns a Linestring with length 10^-15 in cell (0, 1) - assert len(result) == 2 or len(result) == 3 + assert len(result) == 2 + # check empty result when using local model coords + ix = GridIntersect(sgr, method="structured", local=True) + result = ix.intersect(ls) + assert len(result) == 0 @requires_pkg("shapely") @@ -1231,6 +1238,10 @@ def test_polygon_offset_rot_structured_grid(): ix = GridIntersect(sgr, method="structured") result = ix.intersect(p) assert len(result) == 3 + # check empty result when using local model coords + ix = GridIntersect(sgr, method="structured", local=True) + result = ix.intersect(p) + assert len(result) == 0 @requires_pkg("shapely") @@ -1241,6 +1252,10 @@ def test_point_offset_rot_structured_grid_shapely(rtree): ix = GridIntersect(sgr, method="vertex", rtree=rtree) result = ix.intersect(p) assert len(result) == 1 + # check empty result when using local model coords + ix = GridIntersect(sgr, method="vertex", rtree=rtree, local=True) + result = ix.intersect(p) + assert len(result) == 0 @requires_pkg("shapely") @@ -1251,6 +1266,10 @@ def test_linestring_offset_rot_structured_grid_shapely(rtree): ix = GridIntersect(sgr, method="vertex", rtree=rtree) result = ix.intersect(ls) assert len(result) == 2 + # check empty result when using local model coords + ix = GridIntersect(sgr, method="vertex", rtree=rtree, local=True) + result = ix.intersect(ls) + assert len(result) == 0 @requires_pkg("shapely") @@ -1268,6 +1287,59 @@ def test_polygon_offset_rot_structured_grid_shapely(rtree): ix = GridIntersect(sgr, method="vertex", rtree=rtree) result = ix.intersect(p) assert len(result) == 3 + # check empty result when using local model coords + ix = GridIntersect(sgr, method="vertex", rtree=rtree, local=True) + result = ix.intersect(p) + assert len(result) == 0 + + +@requires_pkg("shapely") +@rtree_toggle +def test_point_offset_rot_vertex_grid_shapely(rtree): + sgr = get_rect_vertex_grid(angrot=45.0, xyoffset=10.0) + p = Point(10.0, 10 + np.sqrt(200.0)) + ix = GridIntersect(sgr, method="vertex", rtree=rtree) + result = ix.intersect(p) + assert len(result) == 1 + # check empty result when using local model coords + ix = GridIntersect(sgr, method="vertex", rtree=rtree, local=True) + result = ix.intersect(p) + assert len(result) == 0 + + +@requires_pkg("shapely") +@rtree_toggle +def test_linestring_offset_rot_vertex_grid_shapely(rtree): + sgr = get_rect_vertex_grid(angrot=45.0, xyoffset=10.0) + ls = LineString([(5, 10.0 + np.sqrt(200.0)), (15, 10.0 + np.sqrt(200.0))]) + ix = GridIntersect(sgr, method="vertex", rtree=rtree) + result = ix.intersect(ls) + assert len(result) == 2 + # check empty result when using local model coords + ix = GridIntersect(sgr, method="vertex", rtree=rtree, local=True) + result = ix.intersect(ls) + assert len(result) == 0 + + +@requires_pkg("shapely") +@rtree_toggle +def test_polygon_offset_rot_vertex_grid_shapely(rtree): + sgr = get_rect_vertex_grid(angrot=45.0, xyoffset=10.0) + p = Polygon( + [ + (5, 10.0 + np.sqrt(200.0)), + (15, 10.0 + np.sqrt(200.0)), + (15, 10.0 + 1.5 * np.sqrt(200.0)), + (5, 10.0 + 1.5 * np.sqrt(200.0)), + ] + ) + ix = GridIntersect(sgr, method="vertex", rtree=rtree) + result = ix.intersect(p) + assert len(result) == 3 + # check empty result when using local model coords + ix = GridIntersect(sgr, method="vertex", rtree=rtree, local=True) + result = ix.intersect(p) + assert len(result) == 0 # %% test rasters @@ -1378,3 +1450,14 @@ def test_raster_sampling_methods(example_data_path): raise AssertionError( f"{method} resampling returning incorrect values" ) + + +if __name__ == "__main__": + sgr = get_rect_grid(angrot=45.0, xyoffset=10.0) + ls = LineString([(5, 10.0 + np.sqrt(200.0)), (15, 10.0 + np.sqrt(200.0))]) + ix = GridIntersect(sgr, method="structured") + result = ix.intersect(ls) + assert len(result) == 2 + ix = GridIntersect(sgr, method="structured", local=True) + result = ix.intersect(ls) + assert len(result) == 0 diff --git a/autotest/test_gridutil.py b/autotest/test_gridutil.py index 48522c2c9..dbcc7b865 100644 --- a/autotest/test_gridutil.py +++ b/autotest/test_gridutil.py @@ -2,6 +2,7 @@ import numpy as np import pytest +from modflow_devtools.markers import requires_pkg from flopy.utils.gridutil import ( get_disu_kwargs, @@ -61,6 +62,7 @@ def test_get_lni_infers_layer_count_when_int_ncpl(ncpl, nodes, expected): assert ln == expected[i] +@requires_pkg("shapely") @pytest.mark.parametrize( "nlay, nrow, ncol, delr, delc, tp, botm", [ @@ -123,6 +125,7 @@ def test_get_disu_kwargs(nlay, nrow, ncol, delr, delc, tp, botm): # print(kwargs["nja"]) +@requires_pkg("shapely") @pytest.mark.parametrize( "nlay, nrow, ncol, delr, delc, tp, botm", [ @@ -160,6 +163,7 @@ def test_get_disv_kwargs(nlay, nrow, ncol, delr, delc, tp, botm): # print(kwargs["cell2d"]) +@requires_pkg("shapely") @pytest.mark.parametrize( "qx, qy, qz, nlay, nrow, ncol", [ diff --git a/autotest/test_hydmodfile.py b/autotest/test_hydmodfile.py index 76b70f1bb..3bf29a268 100644 --- a/autotest/test_hydmodfile.py +++ b/autotest/test_hydmodfile.py @@ -79,24 +79,16 @@ def test_hydmodfile_read(hydmod_model_path): assert isinstance(h, HydmodObs) ntimes = h.get_ntimes() - assert ntimes == 101, "Not enough times in hydmod file ()...".format( - os.path.basename(pth) - ) + assert ntimes == 101, "Not enough times in hydmod file ()...".format() times = h.get_times() - assert len(times) == 101, "Not enough times in hydmod file ()...".format( - os.path.basename(pth) - ) + assert len(times) == 101, "Not enough times in hydmod file ()...".format() nitems = h.get_nobs() - assert nitems == 8, "Not enough records in hydmod file ()...".format( - os.path.basename(pth) - ) + assert nitems == 8, "Not enough records in hydmod file ()...".format() labels = h.get_obsnames() - assert len(labels) == 8, "Not enough labels in hydmod file ()...".format( - os.path.basename(pth) - ) + assert len(labels) == 8, "Not enough labels in hydmod file ()...".format() print(labels) for idx in range(ntimes): diff --git a/autotest/test_lake_connections.py b/autotest/test_lake_connections.py index 6bc926b1c..40322b0ab 100644 --- a/autotest/test_lake_connections.py +++ b/autotest/test_lake_connections.py @@ -289,7 +289,7 @@ def test_lake(function_tmpdir, example_data_path): lakes.shape = idomain.shape gwf.dis.idomain = np.where(lakes > -1, 1, idomain) - # convert to Newton-Raphson fomulation and update the linear accelerator + # convert to Newton-Raphson formulation and update the linear accelerator gwf.name_file.newtonoptions = "NEWTON UNDER_RELAXATION" sim.ims.linear_acceleration = "BICGSTAB" diff --git a/autotest/test_lgrutil.py b/autotest/test_lgrutil.py index d3ee43caa..439e4d5e6 100644 --- a/autotest/test_lgrutil.py +++ b/autotest/test_lgrutil.py @@ -101,8 +101,6 @@ def test_lgrutil(): ((2, 3, 3), -3), ] - return - def test_lgrutil2(): # Define parent grid information diff --git a/autotest/test_mbase.py b/autotest/test_mbase.py index 8e3ee5d82..732b18877 100644 --- a/autotest/test_mbase.py +++ b/autotest/test_mbase.py @@ -66,10 +66,8 @@ def test_resolve_exe_by_rel_path(function_tmpdir, use_ext, forgive): assert which(actual) # check behavior if exe DNE - with ( - pytest.warns(UserWarning) - if forgive - else pytest.raises(FileNotFoundError) + with pytest.warns(UserWarning) if forgive else pytest.raises( + FileNotFoundError ): assert not resolve_exe("../bin/mf2005", forgive) @@ -160,3 +158,34 @@ def test_run_model_exe_rel_path(mf6_model_path, function_tmpdir, use_ext): assert success assert any(buff) assert any(ws.glob("*.lst")) + + +@pytest.mark.mf6 +@requires_exe("mf6") +@pytest.mark.parametrize("use_paths", [True, False]) +@pytest.mark.parametrize( + "exe", + [ + "mf6", + Path(which("mf6") or ""), + relpath_safe(Path(which("mf6") or "")), + ], +) +def test_run_model_custom_print( + mf6_model_path, function_tmpdir, use_paths, exe +): + ws = function_tmpdir / "ws" + copytree(mf6_model_path, ws) + + success, buff = run_model( + exe_name=exe, + namefile="mfsim.nam", + model_ws=ws if use_paths else str(ws), + silent=False, + report=True, + custom_print=print, + ) + + assert success + assert any(buff) + assert any(ws.glob("*.lst")) diff --git a/autotest/test_mf6.py b/autotest/test_mf6.py index 080c93930..0e09c8258 100644 --- a/autotest/test_mf6.py +++ b/autotest/test_mf6.py @@ -2249,10 +2249,10 @@ def test_multi_model(function_tmpdir): gwt2 = sim2.get_model("gwt_model_1") ssm2 = gwt2.get_package("ssm") fileinput = [ - ("RCH-1", f"gwt_model_1.rch1.spc"), - ("RCH-2", f"gwt_model_1.rch2.spc"), - ("RCH-3", f"gwt_model_1.rch3.spc", "MIXED"), - ("RCH-4", f"gwt_model_1.rch4.spc"), + ("RCH-1", "gwt_model_1.rch1.spc"), + ("RCH-2", "gwt_model_1.rch2.spc"), + ("RCH-3", "gwt_model_1.rch3.spc", "MIXED"), + ("RCH-4", "gwt_model_1.rch4.spc"), ] ssm2.fileinput = fileinput fi_out = ssm2.fileinput.get_data() diff --git a/autotest/test_mfnwt.py b/autotest/test_mfnwt.py index b45f0fd11..792e54b02 100644 --- a/autotest/test_mfnwt.py +++ b/autotest/test_mfnwt.py @@ -3,10 +3,10 @@ import numpy as np import pytest -from autotest.conftest import get_example_data_path from matplotlib import pyplot as plt from modflow_devtools.markers import requires_exe +from autotest.conftest import get_example_data_path from flopy.modflow import ( Modflow, ModflowBas, diff --git a/autotest/test_mfreadnam.py b/autotest/test_mfreadnam.py index 4be595b72..8f9e7cb77 100644 --- a/autotest/test_mfreadnam.py +++ b/autotest/test_mfreadnam.py @@ -1,6 +1,6 @@ import pytest -from autotest.conftest import get_example_data_path +from autotest.conftest import get_example_data_path from flopy.utils.mfreadnam import ( attribs_from_namfile_header, get_entries_from_namefile, diff --git a/autotest/test_mfsimlist.py b/autotest/test_mfsimlist.py index 150d07204..29ba1ce39 100644 --- a/autotest/test_mfsimlist.py +++ b/autotest/test_mfsimlist.py @@ -1,10 +1,10 @@ import numpy as np import pandas as pd import pytest -from autotest.conftest import get_example_data_path from modflow_devtools.markers import requires_exe import flopy +from autotest.conftest import get_example_data_path from flopy.mf6 import MFSimulation MEMORY_UNITS = ("gigabytes", "megabytes", "kilobytes", "bytes") @@ -104,13 +104,13 @@ def test_mfsimlist_memory(function_tmpdir): total_memory = mfsimlst.get_memory_usage() assert total_memory > 0.0, ( - f"total memory is not greater than 0.0 " + f"({total_memory})" + "total memory is not greater than 0.0 " + f"({total_memory})" ) total_memory_kb = mfsimlst.get_memory_usage(units="kilobytes") assert np.allclose(total_memory_kb, total_memory * 1e6), ( f"total memory in kilobytes ({total_memory_kb}) is not equal to " - + f"the total memory converted to kilobytes " + + "the total memory converted to kilobytes " + f"({total_memory * 1e6})" ) diff --git a/autotest/test_model_splitter.py b/autotest/test_model_splitter.py index 82e2ecd62..c7756589d 100644 --- a/autotest/test_model_splitter.py +++ b/autotest/test_model_splitter.py @@ -1,10 +1,10 @@ import numpy as np import pytest -from autotest.conftest import get_example_data_path from modflow_devtools.markers import requires_exe, requires_pkg from modflow_devtools.misc import set_dir import flopy +from autotest.conftest import get_example_data_path from flopy.mf6 import MFSimulation from flopy.mf6.utils import Mf6Splitter @@ -364,7 +364,7 @@ def test_control_records(function_tmpdir): if spd_ls2["filename"] is None or not spd_ls2["binary"]: raise AssertionError( - "External binary file input not being preseved for MFList" + "External binary file input not being preserved for MFList" ) diff --git a/autotest/test_modflow.py b/autotest/test_modflow.py index 62675b9b2..c421869d5 100644 --- a/autotest/test_modflow.py +++ b/autotest/test_modflow.py @@ -8,10 +8,10 @@ import numpy as np import pandas as pd import pytest -from autotest.conftest import get_example_data_path from modflow_devtools.markers import excludes_platform, requires_exe from modflow_devtools.misc import has_pkg +from autotest.conftest import get_example_data_path from flopy.discretization import StructuredGrid from flopy.mf6 import MFSimulation from flopy.modflow import ( @@ -915,11 +915,14 @@ def test_bcs_check(function_tmpdir): assert len(chk.summary_array) == 1 ghb = ModflowGhb(mf, stress_period_data={0: [0, 0, 0, 100, 1]}) + riv_spd = pd.DataFrame( + [[0, 0, 0, 0, 101.0, 10.0, 100.0], [0, 0, 0, 1, 80.0, 10.0, 90.0]], + columns=["kper", "k", "i", "j", "stage", "cond", "rbot"], + ) + riv = ModflowRiv( mf, - stress_period_data={ - 0: [[0, 0, 0, 101, 10, 100], [0, 0, 1, 80, 10, 90]] - }, + stress_period_data=riv_spd.to_records(index=False), ) chk = ghb.check() assert chk.summary_array["desc"][0] == "BC in inactive cell" @@ -1039,7 +1042,7 @@ def test_oc_check(): ModflowDis(m) oc.stress_period_data = {(0, 0): ["save head", "save budget"]} - chk = oc.check() # check passsed + chk = oc.check() # check passed assert len(chk.summary_array) == 0, len(chk.summary_array) oc.stress_period_data = {(0, 0): ["save"]} diff --git a/autotest/test_mp5.py b/autotest/test_mp5.py index 7c4515444..4e702a639 100644 --- a/autotest/test_mp5.py +++ b/autotest/test_mp5.py @@ -1,11 +1,9 @@ import os import numpy as np -import pandas as pd -from autotest.test_mp6 import eval_timeseries from matplotlib import pyplot as plt -from modflow_devtools.markers import requires_pkg +from autotest.test_mp6 import eval_timeseries from flopy.modflow import Modflow from flopy.plot import PlotMapView from flopy.utils import EndpointFile, PathlineFile @@ -50,14 +48,8 @@ def test_mp5_load(function_tmpdir, example_data_path): for n in pthobj.nid: p = pthobj.get_data(partid=n) e = endobj.get_data(partid=n) - try: - mm.plot_pathline(p, colors=colors[n], layer="all") - except: - assert False, f'could not plot pathline {n + 1} with layer="all"' - try: - mm.plot_endpoint(e) - except: - assert False, f'could not plot endpoint {n + 1} with layer="all"' + mm.plot_pathline(p, colors=colors[n], layer="all") + mm.plot_endpoint(e) # plot the grid and ibound array mm.plot_grid(lw=0.5) diff --git a/autotest/test_mp6.py b/autotest/test_mp6.py index e9f3e59b9..73935a1d4 100644 --- a/autotest/test_mp6.py +++ b/autotest/test_mp6.py @@ -6,11 +6,11 @@ import matplotlib.pyplot as plt import numpy as np import pytest -from autotest.conftest import get_example_data_path from modflow_devtools.markers import requires_exe, requires_pkg from numpy.lib.recfunctions import repack_fields import flopy +from autotest.conftest import get_example_data_path from flopy.discretization import StructuredGrid from flopy.export.shapefile_utils import shp2recarray from flopy.modflow import Modflow, ModflowMnw2 diff --git a/autotest/test_mp7.py b/autotest/test_mp7.py index 69622b777..f763e577b 100644 --- a/autotest/test_mp7.py +++ b/autotest/test_mp7.py @@ -4,9 +4,9 @@ import matplotlib.pyplot as plt import numpy as np import pytest -from autotest.test_mp7_cases import Mp7Cases from modflow_devtools.markers import requires_exe, requires_pkg +from autotest.test_mp7_cases import Mp7Cases from flopy.mf6 import ( MFSimulation, ModflowGwf, diff --git a/autotest/test_notebooks.py b/autotest/test_notebooks.py index 68e24b65c..4c853645d 100644 --- a/autotest/test_notebooks.py +++ b/autotest/test_notebooks.py @@ -2,10 +2,11 @@ from pprint import pprint import pytest -from autotest.conftest import get_project_root_path from flaky import flaky from modflow_devtools.misc import run_cmd +from autotest.conftest import get_project_root_path + def get_notebooks(pattern=None, exclude=None): prjroot = get_project_root_path() diff --git a/autotest/test_particledata.py b/autotest/test_particledata.py index fa9b2c5fd..ed1f167ab 100644 --- a/autotest/test_particledata.py +++ b/autotest/test_particledata.py @@ -1,14 +1,15 @@ from functools import reduce from itertools import chain +from pprint import pformat import matplotlib.pyplot as plt import numpy as np import pandas as pd import pytest -from autotest.test_grid_cases import GridCases -from modflow_devtools.markers import requires_pkg +from modflow_devtools.markers import requires_exe, requires_pkg import flopy +from autotest.test_grid_cases import GridCases from flopy.discretization import StructuredGrid from flopy.mf6.modflow.mfsimulation import MFSimulation from flopy.modflow.mf import Modflow @@ -22,9 +23,11 @@ Modpath7Sim, NodeParticleData, ParticleData, + ParticleGroupLRCTemplate, ParticleGroupNodeTemplate, ) -from flopy.utils.modpathfile import PathlineFile +from flopy.modpath.mp7particlegroup import ParticleGroup +from flopy.utils.modpathfile import EndpointFile, PathlineFile # utilities @@ -44,7 +47,7 @@ def flatten(a): ] -# test constructors +# test initializers structured_dtype = np.dtype( @@ -276,13 +279,18 @@ def test_particledata_to_prp_dis_9(): assert np.allclose(rpts_prt, rpts_exp, atol=1e-3) -@pytest.mark.parametrize("localx", [None, 0.5, 0.25]) -@pytest.mark.parametrize("localy", [None, 0.5, 0.25]) -def test_particledata_to_prp_disv_1(localx, localy): +@pytest.mark.parametrize("lx", [None, 0.5, 0.25]) # local x coord +@pytest.mark.parametrize("ly", [None, 0.5, 0.25]) # local y coord +@pytest.mark.parametrize( + "localz", [False, True] +) # whether to return local z coords +def test_particledata_to_prp_disv_1(lx, ly, localz): """ 1 particle in bottom left cell, testing with default location (middle), explicitly specifying middle, and - offset in x and y directions + offset in x and y directions. Also test the `localz` + switch, which determines whether to return local z + coordinates (on interval [0, 1]) rather than global. """ # model grid @@ -290,28 +298,28 @@ def test_particledata_to_prp_disv_1(localx, localy): # particle data locs = [4] - localx = [localx] if localx else None - localy = [localy] if localy else None + lx = [lx] if lx else None + ly = [ly] if ly else None part_data = ParticleData( partlocs=locs, structured=False, particleids=range(len(locs)), - localx=localx, - localy=localy, + localx=lx, + localy=ly, ) # convert to global coordinates - rpts_prt = flatten(list(part_data.to_prp(grid))) + rpts_prt = flatten(list(part_data.to_prp(grid, localz=localz))) # check conversion succeeded assert len(rpts_prt) == len(locs) assert all( len(c) == 6 for c in rpts_prt ) # each coord should be a tuple (irpt, k, j, x, y, z) - for ci, c in enumerate(rpts_prt): - assert np.isclose(c[3], localx[0] if localx else 0.5) # check x - assert np.isclose(c[4], localy[0] if localy else 0.5) # check y - assert np.isclose(c[5], 7.5) # check z + for rpt in rpts_prt: + assert np.isclose(rpt[3], lx[0] if lx else 0.5) # check x + assert np.isclose(rpt[4], ly[0] if ly else 0.5) # check y + assert np.isclose(rpt[5], 0.5 if localz else 7.5) # check z # debugging: plot grid, cell centers, and particle location # fig, ax = plt.subplots(nrows=1, ncols=1, figsize=(10, 10)) @@ -333,7 +341,10 @@ def test_particledata_to_prp_disv_1(localx, localy): # plt.show() -def test_particledata_to_prp_disv_9(): +@pytest.mark.parametrize( + "localz", [False, True] +) # whether to return local z coords +def test_particledata_to_prp_disv_9(localz): # minimal vertex grid grid = GridCases().vertex_small() @@ -367,81 +378,27 @@ def test_particledata_to_prp_disv_9(): 0, float(f"0.{i + 1}"), float(f"2.{i + 1}"), - (grid.xyzextent[5] - grid.xyzextent[4]) / 2, + 0.5 if localz else ((grid.xyzextent[5] - grid.xyzextent[4]) / 2), ) for i in range(9) ] # convert to prt format - rpts_prt = flatten(list(part_data.to_prp(grid))) + rpts_prt = flatten(list(part_data.to_prp(grid, localz=localz))) assert np.allclose(rpts_prt, rpts_exp, atol=1e-3) -def test_lrcparticledata_to_prp_divisions_defaults(): +@pytest.mark.parametrize( + "localz", [False, True] +) # whether to return local z coords +def test_lrcparticledata_to_prp_divisions_defaults(localz, array_snapshot): sd_data = CellDataType() regions = [[0, 0, 1, 0, 1, 1]] part_data = LRCParticleData( subdivisiondata=[sd_data], lrcregions=[regions] ) grid = GridCases().structured_small() - rpts_prt = flatten(list(part_data.to_prp(grid))) - rpts_exp = [ - [0, 0, 0, 1, 1.166666, 1.166666, 5.833333], - [1, 0, 0, 1, 1.166666, 1.166666, 7.5], - [2, 0, 0, 1, 1.166666, 1.166666, 9.166666], - [3, 0, 0, 1, 1.1666666, 1.5, 5.833333], - [4, 0, 0, 1, 1.1666666, 1.5, 7.5], - [5, 0, 0, 1, 1.1666666, 1.5, 9.166666], - [6, 0, 0, 1, 1.166666, 1.833333, 5.833333], - [7, 0, 0, 1, 1.166666, 1.833333, 7.5], - [8, 0, 0, 1, 1.166666, 1.833333, 9.166666], - [9, 0, 0, 1, 1.5, 1.166666, 5.833333], - [10, 0, 0, 1, 1.5, 1.166666, 7.5], - [11, 0, 0, 1, 1.5, 1.166666, 9.166666], - [12, 0, 0, 1, 1.5, 1.5, 5.833333], - [13, 0, 0, 1, 1.5, 1.5, 7.5], - [14, 0, 0, 1, 1.5, 1.5, 9.166666], - [15, 0, 0, 1, 1.5, 1.833333, 5.833333], - [16, 0, 0, 1, 1.5, 1.833333, 7.5], - [17, 0, 0, 1, 1.5, 1.833333, 9.166666], - [18, 0, 0, 1, 1.833333, 1.166666, 5.833333], - [19, 0, 0, 1, 1.833333, 1.166666, 7.5], - [20, 0, 0, 1, 1.833333, 1.166666, 9.166666], - [21, 0, 0, 1, 1.833333, 1.5, 5.833333], - [22, 0, 0, 1, 1.833333, 1.5, 7.5], - [23, 0, 0, 1, 1.833333, 1.5, 9.166666], - [24, 0, 0, 1, 1.833333, 1.833333, 5.833333], - [25, 0, 0, 1, 1.833333, 1.833333, 7.5], - [26, 0, 0, 1, 1.833333, 1.833333, 9.166666], - [27, 0, 1, 1, 1.166666, 0.166666, 5.833333], - [28, 0, 1, 1, 1.166666, 0.166666, 7.5], - [29, 0, 1, 1, 1.166666, 0.166666, 9.166666], - [30, 0, 1, 1, 1.166666, 0.5, 5.833333], - [31, 0, 1, 1, 1.166666, 0.5, 7.5], - [32, 0, 1, 1, 1.166666, 0.5, 9.166666], - [33, 0, 1, 1, 1.166666, 0.833333, 5.833333], - [34, 0, 1, 1, 1.166666, 0.833333, 7.5], - [35, 0, 1, 1, 1.166666, 0.833333, 9.166666], - [36, 0, 1, 1, 1.5, 0.166666, 5.833333], - [37, 0, 1, 1, 1.5, 0.166666, 7.5], - [38, 0, 1, 1, 1.5, 0.166666, 9.166666], - [39, 0, 1, 1, 1.5, 0.5, 5.833333], - [40, 0, 1, 1, 1.5, 0.5, 7.5], - [41, 0, 1, 1, 1.5, 0.5, 9.166666], - [42, 0, 1, 1, 1.5, 0.833333, 5.833333], - [43, 0, 1, 1, 1.5, 0.833333, 7.5], - [44, 0, 1, 1, 1.5, 0.833333, 9.166666], - [45, 0, 1, 1, 1.833333, 0.166666, 5.833333], - [46, 0, 1, 1, 1.833333, 0.166666, 7.5], - [47, 0, 1, 1, 1.833333, 0.166666, 9.166666], - [48, 0, 1, 1, 1.833333, 0.5, 5.833333], - [49, 0, 1, 1, 1.833333, 0.5, 7.5], - [50, 0, 1, 1, 1.833333, 0.5, 9.166666], - [51, 0, 1, 1, 1.833333, 0.833333, 5.833333], - [52, 0, 1, 1, 1.833333, 0.833333, 7.5], - [53, 0, 1, 1, 1.833333, 0.833333, 9.166666], - ] - + rpts_prt = flatten(list(part_data.to_prp(grid, localz=localz))) num_cells = reduce( sum, [ @@ -459,7 +416,7 @@ def test_lrcparticledata_to_prp_divisions_defaults(): * sd_data.layercelldivisions ) assert act_len == exp_len - assert np.allclose(rpts_prt, rpts_exp) + assert rpts_prt == array_snapshot def test_lrcparticledata_to_prp_divisions_custom(): @@ -567,7 +524,7 @@ def test_lrcparticledata_to_prp_top_bottom(): assert rpts_prt[1][6] == grid.top_botm[0, 1, 1] -def test_lrcparticledata_to_prp_1_per_face(): +def test_lrcparticledata_to_prp_1_per_face(array_snapshot): sddata = FaceDataType( horizontaldivisions1=1, verticaldivisions1=1, @@ -586,15 +543,6 @@ def test_lrcparticledata_to_prp_1_per_face(): data = LRCParticleData(subdivisiondata=[sddata], lrcregions=[lrcregions]) grid = GridCases().structured_small() rpts_prt = flatten(list(data.to_prp(grid))) - rpts_exp = [ - # irpt, k, i, j, x, y, z - [0, 0, 1, 1, 1.0, 0.5, 7.5], - [1, 0, 1, 1, 2.0, 0.5, 7.5], - [2, 0, 1, 1, 1.5, 0.0, 7.5], - [3, 0, 1, 1, 1.5, 1.0, 7.5], - [4, 0, 1, 1, 1.5, 0.5, 5.0], - [5, 0, 1, 1, 1.5, 0.5, 10.0], - ] num_cells = len( [ (lrc[3] - lrc[0]) * (lrc[4] - lrc[1]) * (lrc[5] - lrc[2]) @@ -602,11 +550,14 @@ def test_lrcparticledata_to_prp_1_per_face(): ] ) assert len(rpts_prt) == num_cells * 6 # 1 particle on each face - assert np.allclose(rpts_prt, rpts_exp) + assert rpts_prt == array_snapshot +@pytest.mark.parametrize( + "localz", [False, True] +) # whether to return local z coords def test_nodeparticledata_to_prp_disv_defaults( - function_tmpdir, example_data_path + function_tmpdir, example_data_path, localz ): """ This test loads a GWF simulation, runs it, and feeds it to an MP7 simulation @@ -669,14 +620,15 @@ def test_nodeparticledata_to_prp_disv_defaults( mp7_pls = pd.concat([pd.DataFrame(ra) for ra in pldata]) mp7_pls = mp7_pls.sort_values(by=["time", "particleid"]).head(27) mp7_rpts = [ - [0, r.k, r.x, r.y, r.z] for r in mp7_pls.itertuples() + [0, r.k, r.x, r.y, r.zloc if localz else r.z] + for r in mp7_pls.itertuples() ] # omit rpt index mp7_rpts.sort() # convert particle data to prt format, flatten (remove cell ID tuples), - # remove irpt as it is not gauranteed to match, and sort - prt_rpts = flatten(list(pdat.to_prp(grid))) - prt_rpts = [r[1:] for r in prt_rpts] # + # remove irpt as it is not guaranteed to match, and sort + prt_rpts = flatten(list(pdat.to_prp(grid, localz=localz))) + prt_rpts = [r[1:] for r in prt_rpts] prt_rpts.sort() assert np.allclose(prt_rpts, mp7_rpts) @@ -792,7 +744,7 @@ def test_nodeparticledata_prp_disv_big(function_tmpdir): print(rpts_prt) -# test write +# test write() def test_lrcparticledata_write(function_tmpdir): @@ -823,3 +775,102 @@ def test_lrcparticledata_write(function_tmpdir): # check lines written lines = open(p).readlines() assert lines == ["1 1\n", "2 1 0\n", " 5 5 1\n", "1 3 3 3 4 4 \n"] + + +# To make it easier to compare MODFLOW 6 PRT and MODPATH 7 results, +# we want to_coords() and to_prp() to return release configurations +# in the same order as is generated by MODPATH 7. That is, an input +# file for MF6 PRT's PRP package should list particle release points +# in the same order that MODPATH 7 assigns particle IDs upon release +# from any input style. The tests below set up bare-bones MP7 models +# in endpoint mode and compare against their release points. + + +@pytest.fixture +def mf6_sim(function_tmpdir): + name = "tiny-gwf" + sim = flopy.mf6.MFSimulation( + sim_name=name, sim_ws=function_tmpdir, exe_name="mf6" + ) + tdis = flopy.mf6.ModflowTdis(sim) + ims = flopy.mf6.ModflowIms(sim) + gwf = flopy.mf6.ModflowGwf(sim, modelname=name, save_flows=True) + dis = flopy.mf6.ModflowGwfdis(gwf, nrow=1, ncol=1) + ic = flopy.mf6.ModflowGwfic(gwf) + npf = flopy.mf6.ModflowGwfnpf(gwf, save_specific_discharge=True) + chd = flopy.mf6.ModflowGwfchd(gwf, stress_period_data=[[(0, 0, 0), 1.0]]) + budget_file = name + ".bud" + head_file = name + ".hds" + oc = flopy.mf6.ModflowGwfoc( + gwf, + budget_filerecord=budget_file, + head_filerecord=head_file, + saverecord=[("HEAD", "ALL"), ("BUDGET", "ALL")], + ) + return sim + + +def get_mp7_sim(mf6_sim, groups): + mp = Modpath7( + modelname=f"{mf6_sim.name}_mp7", + flowmodel=mf6_sim.get_model(), + exe_name="mp7", + model_ws=mf6_sim.sim_path, + ) + mpbas = Modpath7Bas(mp) + mpsim = Modpath7Sim( + mp, + simulationtype="endpoint", + trackingdirection="forward", + particlegroups=groups, + ) + return mp + + +@requires_exe("mp7") +def test_lrcparticledata_celldatatype_to_coords_order(mf6_sim): + mf6_sim.write_simulation() + success, buff = mf6_sim.run_simulation() + assert success, pformat(buff) + + pdata = flopy.modpath.LRCParticleData() + pg = ParticleGroupLRCTemplate(particlegroupname="PG1", particledata=pdata) + mp7_sim = get_mp7_sim(mf6_sim, [pg]) + mp7_sim.write_input() + success, buff = mp7_sim.run_model() + assert success, pformat(buff) + + gwf = mf6_sim.get_model() + grid = gwf.modelgrid + ep_file = EndpointFile(mf6_sim.sim_path / f"{mp7_sim.name}.mpend") + expected = ep_file.get_destination_endpoint_data(range(grid.nnodes))[ + ["x0", "y0", "z0"] + ].tolist() + actual = list(pdata.to_coords(grid)) + assert len(expected) == len(actual) == 27 + assert np.allclose(expected, actual) + + +def test_lrcparticledata_facedatatype_to_coords_order(mf6_sim): + mf6_sim.write_simulation() + success, buff = mf6_sim.run_simulation() + assert success, pformat(buff) + + pdata = flopy.modpath.LRCParticleData( + subdivisiondata=[FaceDataType()], + ) + pg = ParticleGroupLRCTemplate(particlegroupname="PG1", particledata=pdata) + mp7_sim = get_mp7_sim(mf6_sim, [pg]) + mp7_sim.write_input() + success, buff = mp7_sim.run_model() + assert success, pformat(buff) + + gwf = mf6_sim.get_model() + grid = gwf.modelgrid + ep_file = EndpointFile(mf6_sim.sim_path / f"{mp7_sim.name}.mpend") + expected = ep_file.get_destination_endpoint_data(range(grid.nnodes))[ + ["x0", "y0", "z0"] + ].tolist() + actual = list(pdata.to_coords(grid)) + assert len(expected) == len(actual) == 54 + assert np.allclose(expected, actual) diff --git a/autotest/test_plot_cross_section.py b/autotest/test_plot_cross_section.py index 2a4605f94..4340d3471 100644 --- a/autotest/test_plot_cross_section.py +++ b/autotest/test_plot_cross_section.py @@ -1,3 +1,4 @@ +import matplotlib.pyplot as plt import numpy as np import pytest from matplotlib.collections import PatchCollection @@ -181,3 +182,49 @@ def test_cross_section_invalid_line_representations_fail(line): grid = structured_square_grid(side=10) with pytest.raises(ValueError): flopy.plot.PlotCrossSection(modelgrid=grid, line={"line": line}) + + +def test_plot_limits(): + xymin, xymax = 0, 1000 + cellsize = 50 + nrow = (xymax - xymin) // cellsize + ncol = nrow + nlay = 1 + + delc = np.full((nrow,), cellsize) + delr = np.full((ncol,), cellsize) + + top = np.full((nrow, ncol), 100) + botm = np.full((nlay, nrow, ncol), 0) + idomain = np.ones(botm.shape, dtype=int) + + grid = flopy.discretization.StructuredGrid( + delc=delc, delr=delr, top=top, botm=botm, idomain=idomain + ) + + fig, ax = plt.subplots() + user_extent = 0, 500, 0, 25 + ax.axis(user_extent) + + pxc = flopy.plot.PlotCrossSection( + modelgrid=grid, ax=ax, line={"column": 4} + ) + pxc.plot_grid() + + lims = ax.axes.viewLim + if (lims.x0, lims.x1, lims.y0, lims.y1) != user_extent: + raise AssertionError("PlotMapView not checking for user scaling") + + plt.close(fig) + + fig, ax = plt.subplots(figsize=(8, 8)) + pxc = flopy.plot.PlotCrossSection( + modelgrid=grid, ax=ax, line={"column": 4} + ) + pxc.plot_grid() + + lims = ax.axes.viewLim + if (lims.x0, lims.x1, lims.y0, lims.y1) != pxc.extent: + raise AssertionError("PlotMapView auto extent setting not working") + + plt.close(fig) diff --git a/autotest/test_plot_map_view.py b/autotest/test_plot_map_view.py index ae4d2630e..2303d24ec 100644 --- a/autotest/test_plot_map_view.py +++ b/autotest/test_plot_map_view.py @@ -235,3 +235,45 @@ def test_map_view_contour_array_structured(function_tmpdir, ndim, rng): # for ix, lev in enumerate(contours.levels): # if not np.allclose(lev, levels[ix]): # raise AssertionError("TriContour NaN catch Failed") + + +def test_plot_limits(): + xymin, xymax = 0, 1000 + cellsize = 50 + nrow = (xymax - xymin) // cellsize + ncol = nrow + nlay = 1 + + delc = np.full((nrow,), cellsize) + delr = np.full((ncol,), cellsize) + + top = np.full((nrow, ncol), 100) + botm = np.full((nlay, nrow, ncol), 0) + idomain = np.ones(botm.shape, dtype=int) + + grid = flopy.discretization.StructuredGrid( + delc=delc, delr=delr, top=top, botm=botm, idomain=idomain + ) + + fig, ax = plt.subplots() + user_extent = 0, 300, 0, 100 + ax.axis(user_extent) + + pmv = flopy.plot.PlotMapView(modelgrid=grid, ax=ax) + pmv.plot_grid() + + lims = ax.axes.viewLim + if (lims.x0, lims.x1, lims.y0, lims.y1) != user_extent: + raise AssertionError("PlotMapView not checking for user scaling") + + plt.close(fig) + + fig, ax = plt.subplots(figsize=(8, 8)) + pmv = flopy.plot.PlotMapView(modelgrid=grid, ax=ax) + pmv.plot_grid() + + lims = ax.axes.viewLim + if (lims.x0, lims.x1, lims.y0, lims.y1) != pmv.extent: + raise AssertionError("PlotMapView auto extent setting not working") + + plt.close(fig) diff --git a/autotest/test_plot_particle_tracks.py b/autotest/test_plot_particle_tracks.py index 2a6ba088a..8ba4342bf 100644 --- a/autotest/test_plot_particle_tracks.py +++ b/autotest/test_plot_particle_tracks.py @@ -4,12 +4,12 @@ import pandas as pd import pytest from matplotlib.collections import LineCollection, PathCollection -from modflow_devtools.markers import requires_exe, requires_pkg +from modflow_devtools.markers import requires_exe from flopy.modflow import Modflow from flopy.modpath import Modpath6, Modpath6Bas from flopy.plot import PlotCrossSection, PlotMapView -from flopy.utils import CellBudgetFile, EndpointFile, HeadFile, PathlineFile +from flopy.utils import EndpointFile, PathlineFile @pytest.fixture @@ -58,7 +58,6 @@ def test_plot(pl): mx.plot_grid() mx.plot_bc("WEL", kper=2, color="blue") pth = mx.plot_pathline(pl, colors="red") - # plt.show() assert isinstance(pth, LineCollection) assert len(pth._paths) == 114 diff --git a/autotest/test_plotutil.py b/autotest/test_plotutil.py index 66ca79a60..8aa228f8a 100644 --- a/autotest/test_plotutil.py +++ b/autotest/test_plotutil.py @@ -3,69 +3,15 @@ import pytest from flopy.plot.plotutil import ( + MP7_ENDPOINT_DTYPE, + MP7_PATHLINE_DTYPE, + PRT_PATHLINE_DTYPE, to_mp7_endpoints, to_mp7_pathlines, to_prt_pathlines, ) -# test PRT-MP7 pathline conversion functions -# todo: define fields in a single location and reference from here -# todo: support optional grid parameter to conversion functions - - -prt_pl_cols = [] - - -mp7_pl_cols = [ - "particleid", - "particlegroup", - "sequencenumber", - "particleidloc", - "time", - "xloc", - "yloc", - "zloc", - "x", - "y", - "z", - "node", - "k", - "stressperiod", - "timestep", -] - - -mp7_ep_cols = [ - "particleid", - "particlegroup", - "particleidloc", - "time", - "time0", - "xloc", - "xloc0", - "yloc", - "yloc0", - "zloc", - "zloc0", - "x0", - "y0", - "z0", - "x", - "y", - "z", - "node", - "node0", - "k", - "k0", - "zone", - "zone0", - "initialcellface", - "cellface", - "status", -] - - -pls = pd.DataFrame.from_records( +PRT_TEST_PATHLINES = pd.DataFrame.from_records( [ [ 1, @@ -229,83 +175,283 @@ 0.5, "PRP000000001", ], + [ + 1, # kper + 1, # kstp + 1, # imdl + 1, # iprp + 1, # irpt + 1, # ilay + 100, # icell + 0, # izone + 5, # istatus + 3, # ireason + 0.0, # trelease + 42.728752, # t + 9.888968, # x + 1.0, # y + 0.5, # z + "PRP000000001", # name + ], + ], + columns=PRT_PATHLINE_DTYPE.names, +) +MP7_TEST_PATHLINES = pd.DataFrame.from_records( + [ + [ + 1, # particleid + 1, # particlegroup + 1, # sequencenumber + 1, # particleidloc + 0.0, # time + 1.0, # x + 2.0, # y + 3.0, # z + 1, # k + 1, # node + 0.1, # xloc + 0.1, # yloc + 0.1, # zloc + 1, # stressperiod + 1, # timestep + ], [ 1, 1, 1, 1, - 1, - 1, - 100, - 0, - 5, - 3, - 0.0, - 42.728752, - 9.888968, - 1.0, - 0.5, - "PRP000000001", + 1.0, # time + 2.0, # x + 3.0, # y + 4.0, # z + 2, # k + 2, # node + 0.9, # xloc + 0.9, # yloc + 0.9, # zloc + 1, # stressperiod + 1, # timestep ], ], - columns=[ - "kper", - "kstp", - "imdl", - "iprp", - "irpt", - "ilay", - "icell", - "izone", - "istatus", - "ireason", - "trelease", - "t", - "x", - "y", - "z", - "name", + columns=MP7_PATHLINE_DTYPE.names, +) +MP7_TEST_ENDPOINTS = pd.DataFrame.from_records( + [ + [ + 1, # particleid + 1, # particlegroup + 1, # particleidloc + 2, # status (terminated at boundary face) + 0.0, # time0 + 1.0, # time + 1, # node0 + 1, # k0 + 0.1, # xloc0 + 0.1, # yloc0 + 0.1, # zloc0 + 0.0, # x0 + 1.0, # y0 + 2.0, # z0 + 1, # zone0 + 1, # initialcellface + 5, # node + 2, # k + 0.9, # xloc + 0.9, # yloc + 0.9, # zloc + 10.0, # x + 11.0, # y + 12.0, # z + 2, # zone + 2, # cellface + ], + [ + 2, # particleid + 1, # particlegroup + 2, # particleidloc + 2, # status (terminated at boundary face) + 0.0, # time0 + 2.0, # time + 1, # node0 + 1, # k0 + 0.1, # xloc0 + 0.1, # yloc0 + 0.1, # zloc0 + 0.0, # x0 + 1.0, # y0 + 2.0, # z0 + 1, # zone0 + 1, # initialcellface + 5, # node + 2, # k + 0.9, # xloc + 0.9, # yloc + 0.9, # zloc + 10.0, # x + 11.0, # y + 12.0, # z + 2, # zone + 2, # cellface + ], + [ + 3, # particleid + 1, # particlegroup + 3, # particleidloc + 2, # status (terminated at boundary face) + 0.0, # time0 + 3.0, # time + 1, # node0 + 1, # k0 + 0.1, # xloc0 + 0.1, # yloc0 + 0.1, # zloc0 + 0.0, # x0 + 1.0, # y0 + 2.0, # z0 + 1, # zone0 + 1, # initialcellface + 5, # node + 2, # k + 0.9, # xloc + 0.9, # yloc + 0.9, # zloc + 10.0, # x + 11.0, # y + 12.0, # z + 2, # zone + 2, # cellface + ], ], + columns=MP7_ENDPOINT_DTYPE.names, ) @pytest.mark.parametrize("dataframe", [True, False]) def test_to_mp7_pathlines(dataframe): - inp_pls = pls if dataframe else pls.to_records(index=False) - mp7_pls = to_mp7_pathlines(inp_pls) + prt_pls = ( + PRT_TEST_PATHLINES + if dataframe + else PRT_TEST_PATHLINES.to_records(index=False) + ) + mp7_pls = to_mp7_pathlines(prt_pls) assert ( - type(inp_pls) + type(prt_pls) == type(mp7_pls) == (pd.DataFrame if dataframe else np.recarray) ) assert len(mp7_pls) == 10 assert set( dict(mp7_pls.dtypes).keys() if dataframe else mp7_pls.dtype.names - ) == set(mp7_pl_cols) + ) == set(MP7_PATHLINE_DTYPE.names) + + +@pytest.mark.parametrize("dataframe", [True, False]) +def test_to_mp7_pathlines_empty(dataframe): + mp7_pls = to_mp7_pathlines( + pd.DataFrame.from_records([], columns=PRT_PATHLINE_DTYPE.names) + if dataframe + else np.recarray((0,), dtype=PRT_PATHLINE_DTYPE) + ) + assert mp7_pls.empty if dataframe else mp7_pls.size == 0 + if dataframe: + mp7_pls = mp7_pls.to_records(index=False) + assert mp7_pls.dtype == MP7_PATHLINE_DTYPE + + +@pytest.mark.parametrize("dataframe", [True, False]) +def test_to_mp7_pathlines_noop(dataframe): + prt_pls = ( + MP7_TEST_PATHLINES + if dataframe + else MP7_TEST_PATHLINES.to_records(index=False) + ) + mp7_pls = to_mp7_pathlines(prt_pls) + assert ( + type(prt_pls) + == type(mp7_pls) + == (pd.DataFrame if dataframe else np.recarray) + ) + assert len(mp7_pls) == 2 + assert set( + dict(mp7_pls.dtypes).keys() if dataframe else mp7_pls.dtype.names + ) == set(MP7_PATHLINE_DTYPE.names) + assert np.array_equal( + mp7_pls if dataframe else pd.DataFrame(mp7_pls), MP7_TEST_PATHLINES + ) @pytest.mark.parametrize("dataframe", [True, False]) def test_to_mp7_endpoints(dataframe): - inp_pls = pls if dataframe else pls.to_records(index=False) - mp7_eps = to_mp7_endpoints(inp_pls) + mp7_eps = to_mp7_endpoints( + PRT_TEST_PATHLINES + if dataframe + else PRT_TEST_PATHLINES.to_records(index=False) + ) assert len(mp7_eps) == 1 + assert np.isclose(mp7_eps.time[0], PRT_TEST_PATHLINES.t.max()) assert set( dict(mp7_eps.dtypes).keys() if dataframe else mp7_eps.dtype.names - ) == set(mp7_ep_cols) + ) == set(MP7_ENDPOINT_DTYPE.names) -def test_to_prt_pathlines_roundtrip(): - inp_pls = pls - mp7_pls = to_mp7_pathlines(inp_pls) +@pytest.mark.parametrize("dataframe", [True, False]) +def test_to_mp7_endpoints_empty(dataframe): + mp7_eps = to_mp7_endpoints( + pd.DataFrame.from_records([], columns=PRT_PATHLINE_DTYPE.names) + if dataframe + else np.recarray((0,), dtype=PRT_PATHLINE_DTYPE) + ) + assert mp7_eps.empty if dataframe else mp7_eps.size == 0 + if dataframe: + mp7_eps = mp7_eps.to_records(index=False) + assert mp7_eps.dtype == MP7_ENDPOINT_DTYPE + + +@pytest.mark.parametrize("dataframe", [True, False]) +def test_to_mp7_endpoints_noop(dataframe): + """Test a recarray or dataframe which already contains MP7 endpoint data""" + mp7_eps = to_mp7_endpoints( + MP7_TEST_ENDPOINTS + if dataframe + else MP7_TEST_ENDPOINTS.to_records(index=False) + ) + assert np.array_equal( + mp7_eps if dataframe else pd.DataFrame(mp7_eps), MP7_TEST_ENDPOINTS + ) + + +@pytest.mark.parametrize("dataframe", [True, False]) +def test_to_prt_pathlines_roundtrip(dataframe): + mp7_pls = to_mp7_pathlines( + PRT_TEST_PATHLINES + if dataframe + else PRT_TEST_PATHLINES.to_records(index=False) + ) prt_pls = to_prt_pathlines(mp7_pls) - inp_pls.drop( - ["imdl", "iprp", "irpt", "name", "istatus", "ireason"], - axis=1, - inplace=True, + if not dataframe: + prt_pls = pd.DataFrame(prt_pls) + assert np.allclose( + PRT_TEST_PATHLINES.drop( + ["imdl", "iprp", "irpt", "name", "istatus", "ireason"], + axis=1, + ), + prt_pls.drop( + ["imdl", "iprp", "irpt", "name", "istatus", "ireason"], + axis=1, + ), ) - prt_pls.drop( - ["imdl", "iprp", "irpt", "name", "istatus", "ireason"], - axis=1, - inplace=True, + + +@pytest.mark.parametrize("dataframe", [True, False]) +def test_to_prt_pathlines_roundtrip_empty(dataframe): + mp7_pls = to_mp7_pathlines( + pd.DataFrame.from_records([], columns=PRT_PATHLINE_DTYPE.names) + if dataframe + else np.recarray((0,), dtype=PRT_PATHLINE_DTYPE) ) - assert np.allclose(inp_pls, prt_pls) + prt_pls = to_prt_pathlines(mp7_pls) + assert mp7_pls.empty if dataframe else mp7_pls.size == 0 + assert prt_pls.empty if dataframe else mp7_pls.size == 0 + assert set( + dict(mp7_pls.dtypes).keys() if dataframe else mp7_pls.dtype.names + ) == set(MP7_PATHLINE_DTYPE.names) diff --git a/autotest/test_postprocessing.py b/autotest/test_postprocessing.py index fd49f0383..b3b6282c4 100644 --- a/autotest/test_postprocessing.py +++ b/autotest/test_postprocessing.py @@ -239,6 +239,148 @@ def test_get_structured_faceflows_freyberg( # ), "get_faceflows quivers are not equal to specific discharge vectors" +@pytest.mark.mf6 +@requires_exe("mf6") +def test_get_structured_faceflows_idomain( + function_tmpdir, +): + name = "gsffi" + + Lx = 1000 + Ly = 1000 + + ncol = 100 + nrow = 100 + nlay = 3 + top = 60 + botm = [40, 20, 0] + + Qwell = -1000 + + # Simulation + sim = flopy.mf6.MFSimulation( + sim_name=name, + version="mf6", + exe_name="mf6", + sim_ws=function_tmpdir, + ) + + tdis = flopy.mf6.ModflowTdis( + simulation=sim, + time_units="DAYS", + nper=1, + perioddata=[(1, 1, 1)], + ) + + ims = flopy.mf6.ModflowIms( + simulation=sim, + inner_dvclose=1e-6, + ) + + # Groundwater flow model + gwf = flopy.mf6.ModflowGwf( + simulation=sim, + modelname=name, + save_flows=True, + ) + + idomain = np.ones((nlay, nrow, ncol)) + for r in range(40, 60): + for c in range(40, 60): + idomain[1, r, c] = -1 + + dis = flopy.mf6.ModflowGwfdis( + model=gwf, + length_units="METERS", + nlay=nlay, + nrow=nrow, + ncol=ncol, + delr=Lx / ncol, + delc=Ly / nrow, + top=top, + botm=botm, + idomain=idomain, + ) + + npf = flopy.mf6.ModflowGwfnpf( + model=gwf, + icelltype=[0, 0, 0], + k=[10, 0.01, 10], + k33=[1, 0.001, 1], + ) + + well_list = [ + [ + (nlay - 1, nrow // 2, ncol // 2), + Qwell, + ] + ] + well_spd = {0: well_list} + + wel = flopy.mf6.ModflowGwfwel( + model=gwf, + stress_period_data=well_spd, + ) + + chd_list = [] + for r in range(nrow): + for c in range(ncol): + chd_list.append( + [ + (0, r, c), + top, + ] + ) + chd_spd = {0: chd_list} + + chd = flopy.mf6.ModflowGwfchd( + model=gwf, + stress_period_data=chd_spd, + ) + + ic = flopy.mf6.ModflowGwfic( + model=gwf, + strt=top, + ) + + oc = flopy.mf6.ModflowGwfoc( + model=gwf, + budget_filerecord=f"{name}.cbc", + head_filerecord=f"{name}.hds", + saverecord=[("HEAD", "ALL"), ("BUDGET", "ALL")], + ) + + sim.write_simulation(silent=True) + success, _ = sim.run_simulation(silent=True) + assert success + + cbb = gwf.output.budget() # get handle to binary budget file + Qja = cbb.get_data(text="FLOW-JA-FACE")[0] + cbc = flopy.mf6.utils.get_structured_faceflows( + Qja, f"{function_tmpdir}/{name}.dis.grb" + ) + cbf = cbc[2] + + cbf0 = cbf[0, :, :] + # Sum vertical cell-face flows for all cells in the top aquifer + Qv_sum = cbf0.sum() + idx = idomain[1, :, :] == -1 + Qv_wind = cbf0[idx].sum() # Flow through aquitard window + Qv_aqui = cbf0[~idx].sum() # Flow across aquitard + + print(f"Total flow across bottom of upper aquifer {Qv_sum:0.2f} m^3/d") + print( + f"Flow across bottom of upper aquifer to aquitard {Qv_aqui:0.2f} m^3/d" + ) + print( + f"Flow across bottom of upper aquifer to lower aquifer {Qv_wind:0.2f} m^3/d" + ) + + print(np.isclose(-Qwell, Qv_sum, atol=1e-3)) + assert np.isclose(-Qwell, Qv_sum, atol=1e-3) + assert Qv_wind > Qv_aqui + + @pytest.mark.mf6 @requires_exe("mf6") def test_flowja_residuals(function_tmpdir, mf6_freyberg_path): diff --git a/autotest/test_seawat.py b/autotest/test_seawat.py index 4337be778..53fb2c500 100644 --- a/autotest/test_seawat.py +++ b/autotest/test_seawat.py @@ -2,9 +2,9 @@ import numpy as np import pytest -from autotest.conftest import get_example_data_path from modflow_devtools.markers import requires_exe +from autotest.conftest import get_example_data_path from flopy.modflow import ( Modflow, ModflowBas, diff --git a/autotest/test_sfr.py b/autotest/test_sfr.py index 42630e188..34a35ddc8 100644 --- a/autotest/test_sfr.py +++ b/autotest/test_sfr.py @@ -8,9 +8,9 @@ import matplotlib.pyplot as plt import numpy as np import pytest -from autotest.conftest import get_example_data_path, get_project_root_path from modflow_devtools.markers import requires_exe, requires_pkg +from autotest.conftest import get_example_data_path, get_project_root_path from flopy.discretization import StructuredGrid from flopy.modflow import Modflow, ModflowDis, ModflowSfr2, ModflowStr from flopy.modflow.mfsfr2 import check diff --git a/autotest/test_specific_discharge.py b/autotest/test_specific_discharge.py index 3ffe4c85e..8a9703059 100644 --- a/autotest/test_specific_discharge.py +++ b/autotest/test_specific_discharge.py @@ -205,7 +205,7 @@ def mf6_model(function_tmpdir): gwf = ModflowGwf( sim, modelname="mf6", - model_nam_file=f"mf6.nam", + model_nam_file="mf6.nam", ) gwf.name_file.save_flows = True @@ -319,7 +319,7 @@ def basic_check(Qx_ext, Qy_ext, Qz_ext): def local_balance_check(Qx_ext, Qy_ext, Qz_ext, hdsfile=None, model=None): - # calculate water blance at every cell + # calculate water balance at every cell local_balance = ( Qx_ext[:, :, :-1] - Qx_ext[:, :, 1:] diff --git a/autotest/test_usg.py b/autotest/test_usg.py index cde831e80..969ca6041 100644 --- a/autotest/test_usg.py +++ b/autotest/test_usg.py @@ -3,10 +3,10 @@ import numpy as np import pytest -from autotest.conftest import get_example_data_path from flaky import flaky from modflow_devtools.markers import requires_exe +from autotest.conftest import get_example_data_path from flopy.mfusg import MfUsg, MfUsgDisU, MfUsgLpf, MfUsgSms, MfUsgWel from flopy.modflow import ( ModflowBas, diff --git a/autotest/test_util_geometry.py b/autotest/test_util_geometry.py index 2c70c730f..053ef2f63 100644 --- a/autotest/test_util_geometry.py +++ b/autotest/test_util_geometry.py @@ -1,7 +1,7 @@ import numpy as np import pytest -from autotest.test_grid_cases import GridCases +from autotest.test_grid_cases import GridCases from flopy.utils.geometry import is_clockwise, point_in_polygon @@ -46,7 +46,7 @@ def test_point_in_polygon_interior(): ypts = grid.ycellcenters mask = point_in_polygon(xpts, ypts, cell) assert mask.sum() == 1 - assert mask[0, 0] == True + assert mask[0, 0] debug_plot(grid, cell, xpts, ypts, mask) diff --git a/autotest/test_uzf.py b/autotest/test_uzf.py index 9a8f3ca17..b95a852bb 100644 --- a/autotest/test_uzf.py +++ b/autotest/test_uzf.py @@ -369,8 +369,8 @@ def test_load_write_sfr_option_block(function_tmpdir, options_path): ext_unit_dict={}, ) - assert sfr3.options.strhc1kh == False - assert sfr3.options.strhc1kv == False + assert sfr3.options.strhc1kh is False + assert sfr3.options.strhc1kv is False def test_load_write_sfr_option_line(function_tmpdir, options_path): @@ -658,3 +658,18 @@ def test_uzf_negative_iuzfopt(function_tmpdir): assert ( np.max(extpd) == np.min(extpd) and np.max(extpd) != 0.2 ), "Read error for iuzfopt less than 0" + + +def test_optionsblock_auxillary_typo(): + # Incorrect: auxillary + # Correct: auxiliary + options = OptionBlock("", ModflowWel, block=True) + assert options.auxiliary == [] + with pytest.deprecated_call(): + assert options.auxillary == [] + with pytest.deprecated_call(): + options.auxillary = ["aux", "iface"] + assert options.auxiliary == ["aux", "iface"] + options.auxiliary = [] + with pytest.deprecated_call(): + assert options.auxillary == [] diff --git a/code.json b/code.json index 3bc8db38e..89e967b7f 100644 --- a/code.json +++ b/code.json @@ -29,9 +29,9 @@ "downloadURL": "https://code.usgs.gov/usgs/modflow/flopy/archive/master.zip", "vcs": "git", "laborHours": -1, - "version": "3.6.0", + "version": "3.7.0", "date": { - "metadataLastUpdated": "2024-02-08" + "metadataLastUpdated": "2024-05-23" }, "organization": "U.S. Geological Survey", "permissions": { diff --git a/docs/PyPI_release.md b/docs/PyPI_release.md index 11728b9a7..0c8acdce5 100644 --- a/docs/PyPI_release.md +++ b/docs/PyPI_release.md @@ -30,7 +30,7 @@ How to Cite *Software/Code citation for FloPy:* -[Bakker, Mark, Post, Vincent, Hughes, J. D., Langevin, C. D., White, J. T., Leaf, A. T., Paulinski, S. R., Bellino, J. C., Morway, E. D., Toews, M. W., Larsen, J. D., Fienen, M. N., Starn, J. J., Brakenhoff, D. A., and Bonelli, W. P., 2024, FloPy v3.6.0: U.S. Geological Survey Software Release, 08 February 2024, https://doi.org/10.5066/F7BK19FH](https://doi.org/10.5066/F7BK19FH) +[Bakker, Mark, Post, Vincent, Hughes, J. D., Langevin, C. D., White, J. T., Leaf, A. T., Paulinski, S. R., Bellino, J. C., Morway, E. D., Toews, M. W., Larsen, J. D., Fienen, M. N., Starn, J. J., Brakenhoff, D. A., and Bonelli, W. P., 2024, FloPy v3.7.0: U.S. Geological Survey Software Release, 23 May 2024, https://doi.org/10.5066/F7BK19FH](https://doi.org/10.5066/F7BK19FH) Disclaimer diff --git a/docs/make_release.md b/docs/make_release.md index 0da0f1703..d65c7619f 100644 --- a/docs/make_release.md +++ b/docs/make_release.md @@ -98,9 +98,7 @@ As described above, making a release manually involves the following steps: - Update MODFLOW 6 dfn files in the repository and MODFLOW 6 package classes by running `python -m flopy.mf6.utils.generate_classes --ref master --no-backup` -- Run `isort` and `black` on the `flopy` module. This can be achieved by running `python scripts/pull_request_prepare.py` from the project root. The commands `isort .` and `black .` can also be run individually instead. - -- Use `run_notebooks.py` in the `scripts` directory to rerun all notebooks in `.docs/Notebooks`. +- Run `ruff check .` and `ruff format .` from the project root. - Generate a changelog starting from the last release with [git cliff](https://github.com/orhun/git-cliff), for instance: `git cliff --config cliff.toml --unreleased --tag=`. @@ -121,7 +119,7 @@ As described above, making a release manually involves the following steps: 2. Set the development version as appropriate: `python scripts/update_version.py -v `. The version number must comply with [PEP 440](https://peps.python.org/pep-0440/). -3. Lint Python files: `python scripts/pull_request_prepare.py` +3. Lint and format Python files: `ruff check .` and `ruff format .` from the project root. 4. Commit and push the updated `develop` branch. diff --git a/etc/environment.yml b/etc/environment.yml index 58bc7e816..c16a75b5b 100644 --- a/etc/environment.yml +++ b/etc/environment.yml @@ -10,11 +10,8 @@ dependencies: - matplotlib>=1.4.0 # lint - - black - cffconvert - - flake8 - - isort - - pylint + - ruff # test - coverage @@ -22,12 +19,14 @@ dependencies: - filelock - jupyter - jupytext - - modflow-devtools - - pytest + - pip: + - git+https://github.com/MODFLOW-USGS/modflow-devtools.git + - pytest!=8.1.0 - pytest-benchmark - pytest-cov - pytest-dotenv - pytest-xdist + - syrupy - virtualenv # optional diff --git a/examples/data/freyberg_usg/freyberg.usg.gsf.with_comment b/examples/data/freyberg_usg/freyberg.usg.gsf.with_comment new file mode 100644 index 000000000..896bc4330 --- /dev/null +++ b/examples/data/freyberg_usg/freyberg.usg.gsf.with_comment @@ -0,0 +1,11521 @@ +# a comment line ala Algomesh +UNSTRUCTURED + 4497 3 1 1 + 7020 + 619741.400 3373170.900 145.7012 + 619991.400 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621116.400 3372045.900 31.25000 2 8 1905 1941 1942 1906 3660 3696 3697 3661 + 1634 621366.400 3372045.900 31.25000 2 8 1906 1942 1943 1907 3661 3697 3698 3662 + 1635 621616.400 3372045.900 31.25000 2 8 1907 1943 1944 1908 3662 3698 3699 3663 + 1636 621866.400 3372045.900 31.25000 2 8 1908 1944 1945 1909 3663 3699 3700 3664 + 1637 622116.400 3372045.900 31.25000 2 8 1909 1945 1946 1910 3664 3700 3701 3665 + 1638 622366.400 3372045.900 31.25000 2 8 1910 1946 1947 1911 3665 3701 3702 3666 + 1639 622616.400 3372045.900 31.25000 2 8 1911 1947 1948 1912 3666 3702 3703 3667 + 1640 622866.400 3372045.900 31.25000 2 8 1912 1948 1949 1913 3667 3703 3704 3668 + 1641 623116.400 3372045.900 31.25000 2 8 1913 1949 1950 1914 3668 3704 3705 3669 + 1642 623366.400 3372045.900 31.25000 2 8 1914 1950 1951 1915 3669 3705 3706 3670 + 1643 623553.900 3372108.400 31.25000 2 8 1915 1927 1928 1916 3670 3682 3683 3671 + 1644 623647.650 3372139.650 31.25000 2 8 1916 1924 1925 1917 3671 3679 3680 3672 + 1645 623710.150 3372139.650 31.25000 2 8 1917 1925 1926 1918 3672 3680 3681 3673 + 1646 623647.650 3372077.150 31.25000 2 8 1924 1928 1929 1925 3679 3683 3684 3680 + 1647 623710.150 3372077.150 31.25000 2 8 1925 1929 1930 1926 3680 3684 3685 3681 + 1648 623553.900 3371983.400 31.25000 2 8 1927 1951 1952 1928 3682 3706 3707 3683 + 1649 623647.650 3372014.650 31.25000 2 8 1928 1933 1934 1929 3683 3688 3689 3684 + 1650 623710.150 3372014.650 31.25000 2 8 1929 1934 1935 1930 3684 3689 3690 3685 + 1651 623647.650 3371952.150 31.25000 2 8 1933 1952 1953 1934 3688 3707 3708 3689 + 1652 623710.150 3371952.150 31.25000 2 8 1934 1953 1954 1935 3689 3708 3709 3690 + 1653 623803.900 3372108.400 31.25000 2 8 1918 1930 1931 1919 3673 3685 3686 3674 + 1654 623928.900 3372108.400 31.25000 2 8 1919 1931 1932 1920 3674 3686 3687 3675 + 1655 623803.900 3371983.400 31.25000 2 8 1930 1954 1955 1931 3685 3709 3710 3686 + 1656 623928.900 3371983.400 31.25000 2 8 1931 1955 1956 1932 3686 3710 3711 3687 + 1657 624116.400 3372045.900 31.25000 2 8 1920 1956 1957 1921 3675 3711 3712 3676 + 1658 624366.400 3372045.900 31.25000 2 8 1921 1957 1958 1922 3676 3712 3713 3677 + 1659 624616.400 3372045.900 31.25000 2 8 1922 1958 1959 1923 3677 3713 3714 3678 + 1660 619866.400 3371795.900 31.25000 2 8 1936 1972 1973 1937 3691 3727 3728 3692 + 1661 620116.400 3371795.900 31.25000 2 8 1937 1973 1974 1938 3692 3728 3729 3693 + 1662 620366.400 3371795.900 31.25000 2 8 1938 1974 1975 1939 3693 3729 3730 3694 + 1663 620616.400 3371795.900 31.25000 2 8 1939 1975 1976 1940 3694 3730 3731 3695 + 1664 620866.400 3371795.900 31.25000 2 8 1940 1976 1977 1941 3695 3731 3732 3696 + 1665 621116.400 3371795.900 31.25000 2 8 1941 1977 1978 1942 3696 3732 3733 3697 + 1666 621366.400 3371795.900 31.25000 2 8 1942 1978 1979 1943 3697 3733 3734 3698 + 1667 621616.400 3371795.900 31.25000 2 8 1943 1979 1980 1944 3698 3734 3735 3699 + 1668 621866.400 3371795.900 31.25000 2 8 1944 1980 1981 1945 3699 3735 3736 3700 + 1669 622116.400 3371795.900 31.25000 2 8 1945 1981 1982 1946 3700 3736 3737 3701 + 1670 622366.400 3371795.900 31.25000 2 8 1946 1982 1983 1947 3701 3737 3738 3702 + 1671 622616.400 3371795.900 31.25000 2 8 1947 1983 1984 1948 3702 3738 3739 3703 + 1672 622866.400 3371795.900 31.25000 2 8 1948 1984 1985 1949 3703 3739 3740 3704 + 1673 623116.400 3371795.900 31.25000 2 8 1949 1985 1986 1950 3704 3740 3741 3705 + 1674 623366.400 3371795.900 31.25000 2 8 1950 1986 1987 1951 3705 3741 3742 3706 + 1675 623553.900 3371858.400 31.25000 2 8 1951 1963 1964 1952 3706 3718 3719 3707 + 1676 623647.650 3371889.650 31.25000 2 8 1952 1960 1961 1953 3707 3715 3716 3708 + 1677 623710.150 3371889.650 31.25000 2 8 1953 1961 1962 1954 3708 3716 3717 3709 + 1678 623647.650 3371827.150 31.25000 2 8 1960 1964 1965 1961 3715 3719 3720 3716 + 1679 623710.150 3371827.150 31.25000 2 8 1961 1965 1966 1962 3716 3720 3721 3717 + 1680 623553.900 3371733.400 31.25000 2 8 1963 1987 1988 1964 3718 3742 3743 3719 + 1681 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620116.400 3371545.900 31.25000 2 8 1973 2009 2010 1974 3728 3764 3765 3729 + 1694 620366.400 3371545.900 31.25000 2 8 1974 2010 2011 1975 3729 3765 3766 3730 + 1695 620616.400 3371545.900 31.25000 2 8 1975 2011 2012 1976 3730 3766 3767 3731 + 1696 620866.400 3371545.900 31.25000 2 8 1976 2012 2013 1977 3731 3767 3768 3732 + 1697 621116.400 3371545.900 31.25000 2 8 1977 2013 2014 1978 3732 3768 3769 3733 + 1698 621366.400 3371545.900 31.25000 2 8 1978 2014 2015 1979 3733 3769 3770 3734 + 1699 621616.400 3371545.900 31.25000 2 8 1979 2015 2016 1980 3734 3770 3771 3735 + 1700 621866.400 3371545.900 31.25000 2 8 1980 2016 2017 1981 3735 3771 3772 3736 + 1701 622116.400 3371545.900 31.25000 2 8 1981 2017 2018 1982 3736 3772 3773 3737 + 1702 622366.400 3371545.900 31.25000 2 8 1982 2018 2019 1983 3737 3773 3774 3738 + 1703 622616.400 3371545.900 31.25000 2 8 1983 2019 2020 1984 3738 3774 3775 3739 + 1704 622866.400 3371545.900 31.25000 2 8 1984 2020 2021 1985 3739 3775 3776 3740 + 1705 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623803.900 3371608.400 31.25000 2 8 1990 2002 2003 1991 3745 3757 3758 3746 + 1718 623928.900 3371608.400 31.25000 2 8 1991 2003 2004 1992 3746 3758 3759 3747 + 1719 623803.900 3371483.400 31.25000 2 8 2002 2026 2027 2003 3757 3781 3782 3758 + 1720 623928.900 3371483.400 31.25000 2 8 2003 2027 2028 2004 3758 3782 3783 3759 + 1721 624116.400 3371545.900 31.25000 2 8 1992 2028 2029 1993 3747 3783 3784 3748 + 1722 624366.400 3371545.900 31.25000 2 8 1993 2029 2030 1994 3748 3784 3785 3749 + 1723 624616.400 3371545.900 31.25000 2 8 1994 2030 2031 1995 3749 3785 3786 3750 + 1724 619866.400 3371295.900 31.25000 2 8 2008 2044 2045 2009 3763 3799 3800 3764 + 1725 620116.400 3371295.900 31.25000 2 8 2009 2045 2046 2010 3764 3800 3801 3765 + 1726 620366.400 3371295.900 31.25000 2 8 2010 2046 2047 2011 3765 3801 3802 3766 + 1727 620616.400 3371295.900 31.25000 2 8 2011 2047 2048 2012 3766 3802 3803 3767 + 1728 620866.400 3371295.900 31.25000 2 8 2012 2048 2049 2013 3767 3803 3804 3768 + 1729 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622616.400 3363295.900 15.25000 3 8 5217 5253 5254 5218 6972 7008 7009 6973 + 4478 622866.400 3363295.900 15.23824 3 8 5218 5254 5255 5219 6973 7009 7010 6974 + 4479 623116.400 3363295.900 15.25000 3 8 5219 5255 5256 5220 6974 7010 7011 6975 + 4480 623366.400 3363295.900 15.26012 3 8 5220 5256 5257 5221 6975 7011 7012 6976 + 4481 623553.900 3363358.400 15.26176 3 8 5221 5233 5234 5222 6976 6988 6989 6977 + 4482 623647.650 3363389.650 15.26468 3 8 5222 5230 5231 5223 6977 6985 6986 6978 + 4483 623710.150 3363389.650 15.27519 3 8 5223 5231 5232 5224 6978 6986 6987 6979 + 4484 623647.650 3363327.150 15.28321 3 8 5230 5234 5235 5231 6985 6989 6990 6986 + 4485 623710.150 3363327.150 15.29345 3 8 5231 5235 5236 5232 6986 6990 6991 6987 + 4486 623553.900 3363233.400 15.28060 3 8 5233 5257 5258 5234 6988 7012 7013 6989 + 4487 623647.650 3363264.650 15.29247 3 8 5234 5239 5240 5235 6989 6994 6995 6990 + 4488 623710.150 3363264.650 15.30258 3 8 5235 5240 5241 5236 6990 6995 6996 6991 + 4489 623647.650 3363202.150 15.29247 3 8 5239 5258 5259 5240 6994 7013 7014 6995 + 4490 623710.150 3363202.150 15.30258 3 8 5240 5259 5260 5241 6995 7014 7015 6996 + 4491 623803.900 3363358.400 15.29990 3 8 5224 5236 5237 5225 6979 6991 6992 6980 + 4492 623928.900 3363358.400 15.32314 3 8 5225 5237 5238 5226 6980 6992 6993 6981 + 4493 623803.900 3363233.400 15.31775 3 8 5236 5260 5261 5237 6991 7015 7016 6992 + 4494 623928.900 3363233.400 15.34041 3 8 5237 5261 5262 5238 6992 7016 7017 6993 + 4495 624116.400 3363295.900 15.37807 3 8 5226 5262 5263 5227 6981 7017 7018 6982 + 4496 624366.400 3363295.900 15.47527 3 8 5227 5263 5264 5228 6982 7018 7019 6983 + 4497 624616.400 3363295.900 15.54551 3 8 5228 5264 5265 5229 6983 7019 7020 6984 diff --git a/examples/data/mf6/notebooks/iconvert.txt b/examples/data/mf6/notebooks/iconvert.txt index 6dc05af7f..d1a9c3366 100644 --- a/examples/data/mf6/notebooks/iconvert.txt +++ b/examples/data/mf6/notebooks/iconvert.txt @@ -1 +1,4 @@ -1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 \ No newline at end of file +1 1 1 1 1 +1 1 1 1 1 +1 1 1 1 1 +1 1 1 1 1 \ No newline at end of file diff --git a/examples/data/mf6/test001a_Tharmonic/flow15.tdis b/examples/data/mf6/test001a_Tharmonic/flow15.tdis index bccfdc368..b259bf9ce 100644 --- a/examples/data/mf6/test001a_Tharmonic/flow15.tdis +++ b/examples/data/mf6/test001a_Tharmonic/flow15.tdis @@ -9,5 +9,5 @@ BEGIN Dimensions END Dimensions BEGIN PERIODDATA - 1.00000000 1 1.00000000 Items: PERLEN NSTP TSMULT + 1.00000000,1,1.00000000 Items: PERLEN NSTP TSMULT END PERIODDATA diff --git a/examples/data/mf6/test001a_Tharmonic/flow15_constant.chd b/examples/data/mf6/test001a_Tharmonic/flow15_constant.chd index 68bce24d5..56c4b56aa 100644 --- a/examples/data/mf6/test001a_Tharmonic/flow15_constant.chd +++ b/examples/data/mf6/test001a_Tharmonic/flow15_constant.chd @@ -11,6 +11,6 @@ BEGIN Dimensions END Dimensions BEGIN Period 1 - 1 1 1 10.0000000 + 1 1 1 1D1 1 1 10 0.0000000 END Period diff --git a/flopy/discretization/grid.py b/flopy/discretization/grid.py index 6d845e8cd..87e24d457 100644 --- a/flopy/discretization/grid.py +++ b/flopy/discretization/grid.py @@ -113,26 +113,12 @@ class Grid: rotation angle of model grid, as it is rotated around the origin point angrot_radians : float rotation angle of model grid, in radians - xgrid : ndarray - returns numpy meshgrid of x edges in reference frame defined by - point_type - ygrid : ndarray - returns numpy meshgrid of y edges in reference frame defined by - point_type - zgrid : ndarray - returns numpy meshgrid of z edges in reference frame defined by - point_type xcenters : ndarray returns x coordinate of cell centers ycenters : ndarray returns y coordinate of cell centers ycenters : ndarray returns z coordinate of cell centers - xyzgrid : [ndarray, ndarray, ndarray] - returns the location of grid edges of all model cells. if the model - grid contains spatial reference information, the grid edges are in the - coordinate system provided by the spatial reference information. - returns a list of three ndarrays for the x, y, and z coordinates xyzcellcenters : [ndarray, ndarray, ndarray] returns the cell centers of all model cells in the model grid. if the model grid contains spatial reference information, the cell centers @@ -150,10 +136,6 @@ class Grid: returns the model grid lines in a list. each line is returned as a list containing two tuples in the format [(x1,y1), (x2,y2)] where x1,y1 and x2,y2 are the endpoints of the line. - xyvertices : (point_type) : ndarray - 1D array of x and y coordinates of cell vertices for whole grid - (single layer) in C-style (row-major) order - (same as np.ravel()) See Also -------- @@ -821,7 +803,7 @@ def cross_section_nodeskip(self, nlay, xypts): def cross_section_adjust_indicies(self, k, cbcnt): """ - Method to get adjusted indicies by layer and confining bed + Method to get adjusted indices by layer and confining bed for PlotCrossSection plotting Parameters @@ -844,8 +826,8 @@ def cross_section_set_contour_arrays( self, plotarray, xcenters, head, elev, projpts ): """ - Method to set countour array centers for rare instances where - matplotlib contouring is prefered over trimesh plotting + Method to set contour array centers for rare instances where + matplotlib contouring is preferred over trimesh plotting Parameters ---------- diff --git a/flopy/discretization/structuredgrid.py b/flopy/discretization/structuredgrid.py index f55bacfe4..befe50ded 100644 --- a/flopy/discretization/structuredgrid.py +++ b/flopy/discretization/structuredgrid.py @@ -836,7 +836,7 @@ def neighbors(self, *args, **kwargs): row number j : int column number - as_node : bool + as_nodes : bool flag to return neighbors as node numbers method : str "rook" for shared edge neighbors (default) "queen" for shared @@ -991,30 +991,53 @@ def top_botm(self): def get_cell_vertices(self, *args, **kwargs): """ - Method to get a set of cell vertices for a single cell - used in the Shapefile export utilities and plotting code - :param node: (int) node number - :param i: (int) cell row number - :param j: (int) cell column number + Get a set of cell vertices for a single cell. + + Parameters + ---------- + node : int, optional + Node index, mutually exclusive with i and j + i, j : int, optional + Row and column index, mutually exclusive with node + Returns - ------- list of x,y cell vertices + ------- + list + list of tuples with x,y coordinates to cell vertices + + Examples + -------- + >>> import flopy + >>> import numpy as np + >>> delr, delc = np.array([10.0] * 3), np.array([10.0] * 4) + >>> sg = flopy.discretization.StructuredGrid(delr=delr, delc=delc) + >>> sg.get_cell_vertices(node=0) + [(0.0, 40.0), (10.0, 40.0), (10.0, 30.0), (0.0, 30.0)] + >>> sg.get_cell_vertices(3, 0) + [(0.0, 10.0), (10.0, 10.0), (10.0, 0.0), (0.0, 0.0)] """ - nn = None if kwargs: - if "node" in kwargs: - nn = kwargs.pop("node") - else: + if args: + raise TypeError( + "mixed positional and keyword arguments not supported" + ) + elif "node" in kwargs: + _, i, j = self.get_lrc(kwargs.pop("node"))[0] + elif "i" in kwargs and "j" in kwargs: i = kwargs.pop("i") j = kwargs.pop("j") - - if len(args) > 0: - if len(args) == 1: - nn = args[0] - else: - i, j = args[0:2] - - if nn is not None: - k, i, j = self.get_lrc(nn)[0] + if kwargs: + unused = ", ".join(kwargs.keys()) + raise TypeError(f"unused keyword arguments: {unused}") + elif len(args) == 0: + raise TypeError("expected one or more arguments") + + if len(args) == 1: + _, i, j = self.get_lrc(args[0])[0] + elif len(args) == 2: + i, j = args + elif len(args) > 2: + raise TypeError("too many arguments") self._copy_cache = False cell_verts = [ diff --git a/flopy/discretization/unstructuredgrid.py b/flopy/discretization/unstructuredgrid.py index 196bde995..24d6b6cf7 100644 --- a/flopy/discretization/unstructuredgrid.py +++ b/flopy/discretization/unstructuredgrid.py @@ -360,7 +360,7 @@ def xyzcellcenters(self): @property def xyzvertices(self): """ - Method to get model grid verticies + Method to get model grid vertices Returns: list of dimension ncpl by nvertices @@ -442,7 +442,7 @@ def cross_section_nodeskip(self, nlay, xypts): def cross_section_adjust_indicies(self, k, cbcnt): """ - Method to get adjusted indicies by layer and confining bed + Method to get adjusted indices by layer and confining bed for PlotCrossSection plotting Parameters @@ -463,8 +463,8 @@ def cross_section_set_contour_arrays( self, plotarray, xcenters, head, elev, projpts ): """ - Method to set countour array centers for rare instances where - matplotlib contouring is prefered over trimesh plotting + Method to set contour array centers for rare instances where + matplotlib contouring is preferred over trimesh plotting Parameters ---------- @@ -1019,13 +1019,17 @@ def from_gridspec(cls, file_path: Union[str, os.PathLike]): with open(file_path) as file: def split_line(): - return file.readline().strip().split() + return [ + head.upper() for head in file.readline().strip().split() + ] header = split_line() + while header[0][0] == "#": + header = split_line() if not (len(header) == 1 and header[0] == "UNSTRUCTURED") or ( len(header) == 2 and header == ["UNSTRUCTURED", "GWF"] ): - raise ValueError(f"Invalid GSF file, no header") + raise ValueError("Invalid GSF file, no header") nnodes = int(split_line()[0]) verts_declared = int(split_line()[0]) diff --git a/flopy/export/longnames.py b/flopy/export/longnames.py index fe4df3fa7..f52c36ca7 100644 --- a/flopy/export/longnames.py +++ b/flopy/export/longnames.py @@ -1,4 +1,4 @@ -""" Human readable long names for netCDF variables. """ +"""Human readable long names for netCDF variables.""" NC_LONG_NAMES = { "botm": "Model layer bottom elevations", diff --git a/flopy/export/netcdf.py b/flopy/export/netcdf.py index 2caba116d..6ad1daffb 100644 --- a/flopy/export/netcdf.py +++ b/flopy/export/netcdf.py @@ -56,7 +56,7 @@ class Logger: def __init__(self, filename, echo=False): self.items = {} self.echo = bool(echo) - if filename == True: + if filename is True: self.echo = True self.filename = None elif filename: @@ -387,10 +387,9 @@ def append(self, other, suffix="_1"): else: for vname, array in other.items(): vname_norm = self.normalize_name(vname) - assert ( - vname_norm in self.nc.variables.keys() - ), f"dict var not in self.vars:{vname}-->" + ",".join( - self.nc.variables.keys() + assert vname_norm in self.nc.variables.keys(), ( + f"dict var not in self.vars:{vname}-->" + + ",".join(self.nc.variables.keys()) ) new_vname = vname_norm + suffix @@ -681,7 +680,7 @@ def initialize_geometry(self): "The FloPy NetCDF module requires pyproj >= 2.2.0." ) - print(f"initialize_geometry::") + print("initialize_geometry::") self.log(f"model crs: {self.model_crs}") print(f"model crs: {self.model_crs}") diff --git a/flopy/export/unitsformat.py b/flopy/export/unitsformat.py index ba208d5c0..e97560b99 100644 --- a/flopy/export/unitsformat.py +++ b/flopy/export/unitsformat.py @@ -1,4 +1,4 @@ -""" unit format strings for netCDF variables. """ +"""unit format strings for netCDF variables.""" NC_UNITS_FORMAT = { "2D_cumulative_well_flux": "{0}^3/{1}", diff --git a/flopy/export/utils.py b/flopy/export/utils.py index ff77baadd..1c3ee4d55 100644 --- a/flopy/export/utils.py +++ b/flopy/export/utils.py @@ -159,12 +159,12 @@ def _add_output_nc_variable( array = np.zeros( (len(times), shape3d[0], shape3d[1], shape3d[2]), dtype=np.float32 ) - array[:] = np.NaN + array[:] = np.nan if isinstance(out_obj, ZBNetOutput): a = np.asarray(out_obj.zone_array, dtype=np.float32) if mask_array3d is not None: - a[mask_array3d] = np.NaN + a[mask_array3d] = np.nan for i, _ in enumerate(times): array[i, :, :, :] = a @@ -187,7 +187,7 @@ def _add_output_nc_variable( print(estr) continue if mask_array3d is not None and a.shape == mask_array3d.shape: - a[mask_array3d] = np.NaN + a[mask_array3d] = np.nan try: array[i, :, :, :] = a.astype(np.float32) except Exception as e: @@ -203,7 +203,7 @@ def _add_output_nc_variable( logger.log(f"creating array for {var_name}") for mask_val in mask_vals: - array[np.where(array == mask_val)] = np.NaN + array[np.where(array == mask_val)] = np.nan mx, mn = np.nanmax(array), np.nanmin(array) array[np.isnan(array)] = netcdf.FILLVALUE @@ -596,7 +596,7 @@ def model_export( output format flag. 'vtk' will export to vtk **kwargs : keyword arguments modelgrid: flopy.discretization.Grid - user supplied modelgrid object which will supercede the built + user supplied modelgrid object which will supersede the built in modelgrid object crs : pyproj.CRS, int, str, optional if `prjfile` is specified Coordinate reference system (CRS) for the model grid @@ -687,9 +687,9 @@ def package_export( package to export fmt : str output format flag. 'vtk' will export to vtk - ** kwargs : keword arguments + ** kwargs : keyword arguments modelgrid: flopy.discretization.Grid - user supplied modelgrid object which will supercede the built + user supplied modelgrid object which will supersede the built in modelgrid object crs : pyproj.CRS, int, str, optional if `prjfile` is specified Coordinate reference system (CRS) for the model grid @@ -873,7 +873,7 @@ def mflist_export(f: Union[str, os.PathLike, NetCdf], mfl, **kwargs): mfl : MfList instance **kwargs : keyword arguments modelgrid : flopy.discretization.Grid - model grid instance which will supercede the flopy.model.modelgrid + model grid instance which will supersede the flopy.model.modelgrid crs : pyproj.CRS, int, str, optional if `prjfile` is specified Coordinate reference system (CRS) for the model grid (must be projected; geographic CRS are not supported). @@ -1034,7 +1034,7 @@ def transient2d_export(f: Union[str, os.PathLike], t2d, fmt=None, **kwargs): min_valid : minimum valid value max_valid : maximum valid value modelgrid : flopy.discretization.Grid - model grid instance which will supercede the flopy.model.modelgrid + model grid instance which will supersede the flopy.model.modelgrid if fmt is set to 'vtk', parameters of Vtk initializer """ @@ -1082,9 +1082,9 @@ def transient2d_export(f: Union[str, os.PathLike], t2d, fmt=None, **kwargs): with np.errstate(invalid="ignore"): if array.dtype not in [int, np.int32, np.int64]: if mask is not None: - array[:, 0, mask] = np.NaN - array[array <= min_valid] = np.NaN - array[array >= max_valid] = np.NaN + array[:, 0, mask] = np.nan + array[array <= min_valid] = np.nan + array[array >= max_valid] = np.nan mx, mn = np.nanmax(array), np.nanmin(array) else: mx, mn = np.nanmax(array), np.nanmin(array) @@ -1099,7 +1099,7 @@ def transient2d_export(f: Union[str, os.PathLike], t2d, fmt=None, **kwargs): var_name = t2d.name.replace("_", "") if isinstance(f, dict): - array[array == netcdf.FILLVALUE] = np.NaN + array[array == netcdf.FILLVALUE] = np.nan f[var_name] = array return f @@ -1194,7 +1194,7 @@ def array3d_export(f: Union[str, os.PathLike], u3d, fmt=None, **kwargs): min_valid : minimum valid value max_valid : maximum valid value modelgrid : flopy.discretization.Grid - model grid instance which will supercede the flopy.model.modelgrid + model grid instance which will supersede the flopy.model.modelgrid if fmt is set to 'vtk', parameters of Vtk initializer """ @@ -1243,7 +1243,7 @@ def array3d_export(f: Union[str, os.PathLike], u3d, fmt=None, **kwargs): # if isinstance(f,NetCdf) and array.shape != f.shape: # f.log("broadcasting 3D array for {0}".format(var_name)) # full_array = np.empty(f.shape) - # full_array[:] = np.NaN + # full_array[:] = np.nan # full_array[:array.shape[0]] = array # array = full_array # f.log("broadcasting 3D array for {0}".format(var_name)) @@ -1256,7 +1256,7 @@ def array3d_export(f: Union[str, os.PathLike], u3d, fmt=None, **kwargs): if mask is not None and array.shape != mask.shape: # f.log("broadcasting 3D array for {0}".format(var_name)) full_array = np.empty(mask.shape) - full_array[:] = np.NaN + full_array[:] = np.nan full_array[: array.shape[0]] = array array = full_array # f.log("broadcasting 3D array for {0}".format(var_name)) @@ -1268,13 +1268,13 @@ def array3d_export(f: Union[str, os.PathLike], u3d, fmt=None, **kwargs): # if u3d.model.modelgrid.bas6 is not None and "ibound" not # in var_name: # array[u3d.model.modelgrid.bas6.ibound.array == 0] = - # np.NaN + # np.nan # elif u3d.model.btn is not None and 'icbund' not in var_name: - # array[u3d.model.modelgrid.btn.icbund.array == 0] = np.NaN + # array[u3d.model.modelgrid.btn.icbund.array == 0] = np.nan if mask is not None: - array[mask] = np.NaN - array[array <= min_valid] = np.NaN - array[array >= max_valid] = np.NaN + array[mask] = np.nan + array[array <= min_valid] = np.nan + array[array >= max_valid] = np.nan mx, mn = np.nanmax(array), np.nanmin(array) else: mx, mn = np.nanmax(array), np.nanmin(array) @@ -1372,7 +1372,7 @@ def array2d_export( min_valid : minimum valid value max_valid : maximum valid value modelgrid : flopy.discretization.Grid - model grid instance which will supercede the flopy.model.modelgrid + model grid instance which will supersede the flopy.model.modelgrid if fmt is set to 'vtk', parameters of Vtk initializer """ @@ -1421,9 +1421,9 @@ def array2d_export( and "ibound" not in u2d.name.lower() and "idomain" not in u2d.name.lower() ): - array[modelgrid.idomain[0, :, :] == 0] = np.NaN - array[array <= min_valid] = np.NaN - array[array >= max_valid] = np.NaN + array[modelgrid.idomain[0, :, :] == 0] = np.nan + array[array <= min_valid] = np.nan + array[array >= max_valid] = np.nan mx, mn = np.nanmax(array), np.nanmin(array) else: mx, mn = np.nanmax(array), np.nanmin(array) @@ -1525,9 +1525,9 @@ def export_array( model grid filename : str or PathLike Path of output file. Export format is determined by - file extention. + file extension. '.asc' Arc Ascii grid - '.tif' GeoTIFF (requries rasterio package) + '.tif' GeoTIFF (requires rasterio package) '.shp' Shapefile a : 2D numpy.ndarray Array to export @@ -1924,7 +1924,7 @@ def export_array_contours( modelgrid : flopy.discretization.Grid object model grid object filename : str or PathLike - Path of output file with '.shp' extention. + Path of output file with '.shp' extension. a : 2D numpy array Array to contour fieldname : str diff --git a/flopy/export/vtk.py b/flopy/export/vtk.py index fd9cbf123..07024a5b8 100644 --- a/flopy/export/vtk.py +++ b/flopy/export/vtk.py @@ -9,6 +9,7 @@ from typing import Union import numpy as np +import pandas as pd from ..datbase import DataInterface, DataType from ..utils import Util3d, import_optional_dependency @@ -99,11 +100,11 @@ class Vtk: modelgrid : flopy.discretization.Grid object any flopy modelgrid object, example. VertexGrid vertical_exageration : float - floating point value to scale vertical exageration of the vtk points + floating point value to scale vertical exaggeration of the vtk points default is 1. binary : bool flag that indicates if Vtk will write a binary or text file. Binary - is prefered as paraview has a bug (8/4/2021) where is cannot represent + is preferred as paraview has a bug (8/4/2021) where is cannot represent NaN values from ASCII (non xml) files. In this case no-data values are set to 1e+30. xml : bool @@ -120,7 +121,7 @@ class Vtk: boolean flag to interpolate vertex elevations based on shared cell elevations. Default is False. point_scalars : bool - boolen flag to write interpolated data at each point based "shared + boolean flag to write interpolated data at each point based "shared vertices". """ @@ -183,7 +184,7 @@ def __init__( self.nvpl = nvpl - # method to accomodate DISU grids, do not use modelgrid.ncpl! + # method to accommodate DISU grids, do not use modelgrid.ncpl! self.ncpl = len(self.iverts) if self.nnodes == len(self.iverts): self.nlay = 1 @@ -520,7 +521,7 @@ def _build_hfbs(self, pkg): mf6 = False hfb_data = pkg.hfb_data else: - # asssume that there is no transient hfb data for now + # assume that there is no transient hfb data for now hfb_data = pkg.stress_period_data.array[0] mf6 = True @@ -791,7 +792,7 @@ def add_transient_array(self, d, name=None, masked_values=None): if self.__transient_output_data: raise AssertionError( "Transient arrays cannot be mixed with transient output, " - "Please create a seperate vtk object for transient package " + "Please create a separate vtk object for transient package " "data" ) @@ -1079,25 +1080,86 @@ def add_model(self, model, selpaklist=None, masked_values=None): def add_pathline_points(self, pathlines, timeseries=False): """ - Method to add Modpath output from a pathline or timeseries file - to the grid. Colors will be representative of totim. + Method to add particle pathlines to the grid, with points + colored by travel-time. Supports MODPATH or MODFLOW6 PRT + pathline format, or MODPATH timeseries format. Parameters ---------- - pathlines : np.recarray or list - pathlines accepts a numpy recarray of a particle pathline or - a list of numpy reccarrays associated with pathlines - timeseries : bool - method to plot data as a series of vtk timeseries files for - animation or as a single static vtk file. Default is false + pathlines : pd.dataframe, np.recarray or list + Particle pathlines, either as a single dataframe or recarray + or a list of such, separated by particle ID. If pathlines are + not provided separately, the dataframe or recarray must have + columns: 'time', 'k' & 'particleid' for MODPATH 3, 5, 6 or 7, + and 'irpt', 'iprp', 'imdl', and 'trelease' for MODFLOW 6 PRT, + so particle pathlines can be distinguished. + timeseries : bool, optional + Whether to plot data as a series of vtk timeseries files for + animation or as a single static vtk file. Default is false. """ - if isinstance(pathlines, (np.recarray, np.ndarray)): - pathlines = [pathlines] + mpx_fields = ["particleid", "time", "k"] + prt_fields = ["imdl", "iprp", "irpt", "trelease", "ilay"] + + if isinstance(pathlines, list): + if len(pathlines) == 0: + return + pathlines = [ + ( + pl.to_records(index=False) + if isinstance(pl, pd.DataFrame) + else pl + ) + for pl in pathlines + ] + fields = pathlines[0].dtype.names + arr_fields = { + n: pathlines[0].dtype[n] + for n in fields + if np.issubdtype(pathlines[0].dtype[n], np.number) + } + if not ( + all(k in fields for k in mpx_fields) + or all(k in fields for k in prt_fields) + ): + raise ValueError("Unrecognized pathline dtype") + elif isinstance(pathlines, (np.recarray, np.ndarray, pd.DataFrame)): + if isinstance(pathlines, pd.DataFrame): + pathlines = pathlines.to_records(index=False) + fields = pathlines.dtype.names + arr_fields = { + n: pathlines.dtype[n] + for n in fields + if np.issubdtype(pathlines.dtype[n], np.number) + } + if all(k in pathlines.dtype.names for k in mpx_fields): + pids = np.unique(pathlines.particleid) + pathlines = [ + pathlines[pathlines.particleid == pid] for pid in pids + ] + elif all(k in pathlines.dtype.names for k in prt_fields): + pls = [] + for imdl in np.unique(pathlines.imdl): + for iprp in np.unique(pathlines.iprp): + for irpt in np.unique(pathlines.irpt): + pl = pathlines[ + (pathlines.imdl == imdl) + & (pathlines.iprp == iprp) + & (pathlines.irpt == irpt) + ] + pls.extend( + [pl[pl.trelease == t] for t in np.unique(pl.t)] + ) + pathlines = pls + else: + raise ValueError("Unrecognized pathline dtype") + else: + raise ValueError( + "Unsupported pathline format, expected array, recarray, dataframe, or list" + ) - keys = ["particleid", "time"] if not timeseries: - arrays = {key: [] for key in keys} + arrays = {f: [] for f in arr_fields} points = [] lines = [] for recarray in pathlines: @@ -1107,8 +1169,8 @@ def add_pathline_points(self, pathlines, timeseries=False): t = tuple(rec[["x", "y", "z"]]) line.append(t) points.append(t) - for key in keys: - arrays[key].append(rec[key]) + for f in arr_fields: + arrays[f].append(rec[f]) lines.append(line) self._set_particle_track_data(points, lines, arrays) @@ -1123,14 +1185,12 @@ def add_pathline_points(self, pathlines, timeseries=False): time = rec["time"] if time not in points: points[time] = [tuple(rec[["x", "y", "z"]])] - t = {key: [] for key in keys} - timeseries_data[time] = t - + timeseries_data[time] = {f: [] for f in arr_fields} else: points[time].append(tuple(rec[["x", "y", "z"]])) - for key in keys: - timeseries_data[time][key].append(rec[key]) + for f in arr_fields: + timeseries_data[time][f].append(rec[f]) self.__pathline_transient_data = timeseries_data self._pathline_points = points @@ -1153,7 +1213,7 @@ def add_heads(self, hds, kstpkper=None, masked_values=None): if not self.__transient_output_data and self.__transient_data: raise AssertionError( "Head data cannot be mixed with transient package data, " - "Please create a seperate vtk object for transient head data" + "Please create a separate vtk object for transient head data" ) if kstpkper is None: @@ -1203,7 +1263,7 @@ def add_cell_budget( if not self.__transient_output_data and self.__transient_data: raise AssertionError( "Binary data cannot be mixed with transient package data, " - "Please create a seperate vtk object for transient head data" + "Please create a separate vtk object for transient head data" ) records = cbc.get_unique_record_names(decode=True) @@ -1458,7 +1518,7 @@ def write(self, f: Union[str, os.PathLike], kper=None): w.SetFileName(str(foo)) w.Update() - if not type(self.pvd) == bool: + if not isinstance(self.pvd, bool): if f.suffix not in (".vtk", ".vtu"): pvdfile = f.parent / f"{f.name}.pvd" else: diff --git a/flopy/mbase.py b/flopy/mbase.py index a41285137..ee7bbd63f 100644 --- a/flopy/mbase.py +++ b/flopy/mbase.py @@ -1507,7 +1507,7 @@ def write_input(self, SelPackList=False, check=False): if self.verbose: print("\nWriting packages:") - if SelPackList == False: + if SelPackList is False: for p in self.packagelist: if self.verbose: print(" Package: ", p.name[0]) @@ -1744,6 +1744,7 @@ def run_model( normal_msg="normal termination", use_async=False, cargs=None, + custom_print=None, ) -> Tuple[bool, List[str]]: """ Run the model using subprocess.Popen, optionally collecting stdout and printing @@ -1782,12 +1783,22 @@ def run_model( cargs : str or list, optional, default None Additional command line arguments to pass to the executable. (Default is None) + custom_print: callable + Optional callable for printing. It will replace the builtin print + function. This is useful for a shorter print output or integration into + other systems such as GUIs. + default is None, i.e. use the builtin print Returns ------- success : boolean buff : list of lines of stdout (empty if report is False) """ + if custom_print is not None: + print = custom_print + else: + print = __builtins__["print"] + success = False buff = [] @@ -1799,7 +1810,7 @@ def run_model( # make sure executable exists if exe_name is None: - raise ValueError(f"An executable name or path must be provided") + raise ValueError("An executable name or path must be provided") exe_path = resolve_exe(exe_name) if not silent: print( diff --git a/flopy/mf6/coordinates/modeldimensions.py b/flopy/mf6/coordinates/modeldimensions.py index 5b9460ecf..878f74a71 100644 --- a/flopy/mf6/coordinates/modeldimensions.py +++ b/flopy/mf6/coordinates/modeldimensions.py @@ -401,9 +401,21 @@ def _create_model_grid(self, grid_type): self._model_grid = UnstructuredModelGrid( self.model_name, self.simulation_data ) - elif grid_type == DiscretizationType.DISL: + elif grid_type == DiscretizationType.DISV1D: self._model_grid = ModelGrid( - self.model_name, self.simulation_data, DiscretizationType.DISL + self.model_name, + self.simulation_data, + DiscretizationType.DISV1D, + ) + elif grid_type == DiscretizationType.DIS2D: + self._model_grid = ModelGrid( + self.model_name, self.simulation_data, DiscretizationType.DIS2D + ) + elif grid_type == DiscretizationType.DISV2D: + self._model_grid = ModelGrid( + self.model_name, + self.simulation_data, + DiscretizationType.DISV2D, ) else: self._model_grid = ModelGrid( @@ -466,9 +478,7 @@ def get_data_shape( data_item_struct, path=path, repeating_key=repeating_key, - )[ - 0 - ] + )[0] num_cols = num_cols + num shape_consistent = ( shape_consistent and consistent_shape diff --git a/flopy/mf6/coordinates/modelgrid.py b/flopy/mf6/coordinates/modelgrid.py index 538594a2e..7b3f69854 100644 --- a/flopy/mf6/coordinates/modelgrid.py +++ b/flopy/mf6/coordinates/modelgrid.py @@ -274,7 +274,7 @@ def _get_connection_number(self, cellid, reverse_connection=False): jas = self._simulation_data.mfdata[ (self._model_name, "disu8", "connectiondata", "ja") ] - if reverse_connection == False: + if reverse_connection is False: connection_list = jas[self._cellid - 1] connecting_cellid = cellid else: @@ -452,12 +452,25 @@ def get_grid_type(simulation_data, model_name): return DiscretizationType.DISU elif ( package_recarray.search_data( - f"disl{structure.get_version_string()}", 0 + f"disv1d{structure.get_version_string()}", 0 ) is not None ): - return DiscretizationType.DISL - + return DiscretizationType.DISV1D + elif ( + package_recarray.search_data( + f"dis2d{structure.get_version_string()}", 0 + ) + is not None + ): + return DiscretizationType.DIS2D + elif ( + package_recarray.search_data( + f"disv2d{structure.get_version_string()}", 0 + ) + is not None + ): + return DiscretizationType.DISV2D return DiscretizationType.UNDEFINED def get_idomain(self): @@ -469,17 +482,26 @@ def get_idomain(self): return self._simulation_data.mfdata[ (self._model_name, "disv", "griddata", "idomain") ].get_data() - elif self._grid_type == DiscretizationType.DISL: + elif self._grid_type == DiscretizationType.DISV1D: return self._simulation_data.mfdata[ - (self._model_name, "disl", "griddata", "idomain") + (self._model_name, "disv1d", "griddata", "idomain") ].get_data() elif self._grid_type == DiscretizationType.DISU: return self._simulation_data.mfdata[ (self._model_name, "disu", "griddata", "idomain") ].get_data() + elif self._grid_type == DiscretizationType.DIS2D: + return self._simulation_data.mfdata[ + (self._model_name, "dis2d", "griddata", "idomain") + ].get_data() + elif self._grid_type == DiscretizationType.DISV2D: + return self._simulation_data.mfdata[ + (self._model_name, "disv2d", "griddata", "idomain") + ].get_data() except_str = ( - "ERROR: Grid type {} for model {} not " - "recognized.".format(self._grid_type, self._model_name) + "ERROR: Grid type {} for model {} not " "recognized.".format( + self._grid_type, self._model_name + ) ) print(except_str) raise MFGridException(except_str) @@ -511,15 +533,18 @@ def get_horizontal_cross_section_dim_arrays(self): np.arange(1, self.num_rows() + 1, 1, np.int32), np.arange(1, self.num_columns() + 1, 1, np.int32), ] - elif self.grid_type() == DiscretizationType.DISV: + elif ( + self.grid_type() == DiscretizationType.DISV + or self.grid_type() == DiscretizationType.DISV2D + ): return [np.arange(1, self.num_cells_per_layer() + 1, 1, np.int32)] elif ( self.grid_type() == DiscretizationType.DISU - or self.grid_type() == DiscretizationType.DISL + or self.grid_type() == DiscretizationType.DISV1D ): except_str = ( "ERROR: Can not get horizontal plane arrays for " - 'model "{}" grid. DISU and DISL grids do not ' + 'model "{}" grid. DISU and DISV1D grids do not ' "support individual layers.".format(self._model_name) ) print(except_str) @@ -528,11 +553,14 @@ def get_horizontal_cross_section_dim_arrays(self): def get_model_dim(self): if self.grid_type() == DiscretizationType.DIS: return [self.num_layers(), self.num_rows(), self.num_columns()] + elif self.grid_type() == DiscretizationType.DIS2D: + return [self.num_rows(), self.num_columns()] elif self.grid_type() == DiscretizationType.DISV: return [self.num_layers(), self.num_cells_per_layer()] elif ( self.grid_type() == DiscretizationType.DISU - or self.grid_type() == DiscretizationType.DISL + or self.grid_type() == DiscretizationType.DISV1D + or self.grid_type() == DiscretizationType.DISV2D ): return [self.num_cells()] @@ -543,6 +571,11 @@ def get_model_dim_arrays(self): np.arange(1, self.num_rows() + 1, 1, np.int32), np.arange(1, self.num_columns() + 1, 1, np.int32), ] + elif self.grid_type() == DiscretizationType.DIS2D: + return [ + np.arange(1, self.num_rows() + 1, 1, np.int32), + np.arange(1, self.num_columns() + 1, 1, np.int32), + ] elif self.grid_type() == DiscretizationType.DISV: return [ np.arange(1, self.num_layers() + 1, 1, np.int32), @@ -550,7 +583,8 @@ def get_model_dim_arrays(self): ] elif ( self.grid_type() == DiscretizationType.DISU - or self.grid_type() == DiscretizationType.DISL + or self.grid_type() == DiscretizationType.DISV1D + or self.grid_type() == DiscretizationType.DISV2D ): return [np.arange(1, self.num_cells() + 1, 1, np.int32)] @@ -566,11 +600,14 @@ def get_layer_array(self): def get_horizontal_cross_section_dim_names(self): if self.grid_type() == DiscretizationType.DIS: return ["row", "column"] - elif self.grid_type() == DiscretizationType.DISV: + elif ( + self.grid_type() == DiscretizationType.DISV + or self.grid_type() == DiscretizationType.DISV2D + ): return ["layer_cell_num"] elif ( self.grid_type() == DiscretizationType.DISU - or self.grid_type() == DiscretizationType.DISL + or self.grid_type() == DiscretizationType.DISV1D ): except_str = ( "ERROR: Can not get layer dimension name for model " @@ -583,11 +620,15 @@ def get_horizontal_cross_section_dim_names(self): def get_model_dim_names(self): if self.grid_type() == DiscretizationType.DIS: return ["layer", "row", "column"] + elif self.grid_type() == DiscretizationType.DIS2D: + return ["row", "column"] elif self.grid_type() == DiscretizationType.DISV: return ["layer", "layer_cell_num"] + elif self.grid_type() == DiscretizationType.DISV2D: + return ["cell_num"] elif ( self.grid_type() == DiscretizationType.DISU - or self.grid_type() == DiscretizationType.DISL + or self.grid_type() == DiscretizationType.DISV1D ): return ["node"] @@ -595,16 +636,23 @@ def get_num_spatial_coordinates(self): grid_type = self.grid_type() if grid_type == DiscretizationType.DIS: return 3 + elif grid_type == DiscretizationType.DIS2D: + return 2 elif grid_type == DiscretizationType.DISV: return 2 - elif ( - grid_type == DiscretizationType.DISU - or grid_type == DiscretizationType.DISL - ): + elif grid_type == DiscretizationType.DISV2D: + return 1 + elif grid_type == DiscretizationType.DISU: + return 1 + elif grid_type == DiscretizationType.DISV1D: return 1 + return 0 def num_rows(self): - if self.grid_type() != DiscretizationType.DIS: + if self.grid_type() not in [ + DiscretizationType.DIS, + DiscretizationType.DIS2D, + ]: except_str = ( 'ERROR: Model "{}" does not have rows. Can not ' "return number of rows.".format(self._model_name) @@ -612,12 +660,16 @@ def num_rows(self): print(except_str) raise MFGridException(except_str) + distype = self.grid_type().name.lower() # dis or dis2d return self._simulation_data.mfdata[ - (self._model_name, "dis", "dimensions", "nrow") + (self._model_name, distype, "dimensions", "nrow") ].get_data() def num_columns(self): - if self.grid_type() != DiscretizationType.DIS: + if self.grid_type() not in [ + DiscretizationType.DIS, + DiscretizationType.DIS2D, + ]: except_str = ( 'ERROR: Model "{}" does not have columns. Can not ' "return number of columns.".format(self._model_name) @@ -625,8 +677,9 @@ def num_columns(self): print(except_str) raise MFGridException(except_str) + distype = self.grid_type().name.lower() # dis or dis2d return self._simulation_data.mfdata[ - (self._model_name, "dis", "dimensions", "ncol") + (self._model_name, distype, "dimensions", "ncol") ].get_data() def num_connections(self): @@ -650,6 +703,10 @@ def num_cells_per_layer(self): return self._simulation_data.mfdata[ (self._model_name, "disv", "dimensions", "ncpl") ].get_data() + elif self.grid_type() == DiscretizationType.DISV2D: + return self._simulation_data.mfdata[ + (self._model_name, "disv", "dimensions", "nodes") + ].get_data() elif self.grid_type() == DiscretizationType.DISU: return self._simulation_data.mfdata[ (self._model_name, "disu", "dimensions", "nodes") @@ -666,22 +723,30 @@ def num_layers(self): ].get_data() elif ( self.grid_type() == DiscretizationType.DISU - or self.grid_type() == DiscretizationType.DISL + or self.grid_type() == DiscretizationType.DISV1D + or self.grid_type() == DiscretizationType.DIS2D + or self.grid_type() == DiscretizationType.DISV2D ): return None def num_cells(self): if self.grid_type() == DiscretizationType.DIS: return self.num_rows() * self.num_columns() * self.num_layers() + elif self.grid_type() == DiscretizationType.DIS2D: + return self.num_rows() * self.num_columns() elif self.grid_type() == DiscretizationType.DISV: return self.num_layers() * self.num_cells_per_layer() elif self.grid_type() == DiscretizationType.DISU: return self._simulation_data.mfdata[ (self._model_name, "disu", "dimensions", "nodes") ].get_data() - elif self.grid_type() == DiscretizationType.DISL: + elif self.grid_type() == DiscretizationType.DISV2D: + return self._simulation_data.mfdata[ + (self._model_name, "disv2d", "dimensions", "nodes") + ].get_data() + elif self.grid_type() == DiscretizationType.DISV1D: return self._simulation_data.mfdata[ - (self._model_name, "disl", "dimensions", "nodes") + (self._model_name, "disv1d", "dimensions", "nodes") ].get_data() def get_all_model_cells(self): @@ -692,6 +757,11 @@ def get_all_model_cells(self): for column in range(0, self.num_columns()): model_cells.append((layer + 1, row + 1, column + 1)) return model_cells + elif self.grid_type() == DiscretizationType.DIS2D: + for row in range(0, self.num_rows()): + for column in range(0, self.num_columns()): + model_cells.append((layer + 1, row + 1, column + 1)) + return model_cells elif self.grid_type() == DiscretizationType.DISV: for layer in range(0, self.num_layers()): for layer_cellid in range(0, self.num_rows()): @@ -699,7 +769,8 @@ def get_all_model_cells(self): return model_cells elif ( self.grid_type() == DiscretizationType.DISU - or self.grid_type() == DiscretizationType.DISL + or self.grid_type() == DiscretizationType.DISV1D + or self.grid_type() == DiscretizationType.DISV2D ): for node in range(0, self.num_cells()): model_cells.append(node + 1) diff --git a/flopy/mf6/data/dfn/common.dfn b/flopy/mf6/data/dfn/common.dfn index b69ae67ed..0fd5220c2 100644 --- a/flopy/mf6/data/dfn/common.dfn +++ b/flopy/mf6/data/dfn/common.dfn @@ -21,6 +21,9 @@ description keyword to indicate that the list of {#1} {#2} will be printed to th name print_concentration description keyword to indicate that the list of {#1} {#2} will be printed to the listing file for every stress period in which ``CONCENTRATION PRINT'' is specified in Output Control. If there is no Output Control option and PRINT\_{#3} is specified, then {#2} are printed for the last time step of each stress period. +name print_temperature +description keyword to indicate that the list of {#1} {#2} will be printed to the listing file for every stress period in which ``TEMPERATURE PRINT'' is specified in Output Control. If there is no Output Control option and PRINT\_{#3} is specified, then {#2} are printed for the last time step of each stress period. + name print_flows description keyword to indicate that the list of {#1} flow rates will be printed to the listing file for every stress period time step in which ``BUDGET PRINT'' is specified in Output Control. If there is no Output Control option and ``PRINT\_FLOWS'' is specified, then flow rates are printed for the last time step of each stress period. diff --git a/flopy/mf6/data/dfn/exg-gwegwe.dfn b/flopy/mf6/data/dfn/exg-gwegwe.dfn new file mode 100644 index 000000000..7b79ce7e7 --- /dev/null +++ b/flopy/mf6/data/dfn/exg-gwegwe.dfn @@ -0,0 +1,281 @@ +# --------------------- exg gwegwe options --------------------- +# flopy multi-package + +block options +name gwfmodelname1 +type string +reader urword +optional false +longname keyword to specify name of first corresponding GWF Model +description keyword to specify name of first corresponding GWF Model. In the simulation name file, the GWE6-GWE6 entry contains names for GWE Models (exgmnamea and exgmnameb). The GWE Model with the name exgmnamea must correspond to the GWF Model with the name gwfmodelname1. + +block options +name gwfmodelname2 +type string +reader urword +optional false +longname keyword to specify name of second corresponding GWF Model +description keyword to specify name of second corresponding GWF Model. In the simulation name file, the GWE6-GWE6 entry contains names for GWE Models (exgmnamea and exgmnameb). The GWE Model with the name exgmnameb must correspond to the GWF Model with the name gwfmodelname2. + +block options +name auxiliary +type string +shape (naux) +reader urword +optional true +longname keyword to specify aux variables +description an array of auxiliary variable names. There is no limit on the number of auxiliary variables that can be provided. Most auxiliary variables will not be used by the GWF-GWF Exchange, but they will be available for use by other parts of the program. If an auxiliary variable with the name ``ANGLDEGX'' is found, then this information will be used as the angle (provided in degrees) between the connection face normal and the x axis, where a value of zero indicates that a normal vector points directly along the positive x axis. The connection face normal is a normal vector on the cell face shared between the cell in model 1 and the cell in model 2 pointing away from the model 1 cell. Additional information on ``ANGLDEGX'' is provided in the description of the DISU Package. If an auxiliary variable with the name ``CDIST'' is found, then this information will be used as the straight-line connection distance, including the vertical component, between the two cell centers. Both ANGLDEGX and CDIST are required if specific discharge is calculated for either of the groundwater models. + +block options +name boundnames +type keyword +shape +reader urword +optional true +longname +description REPLACE boundnames {'{#1}': 'GWE Exchange'} + +block options +name print_input +type keyword +reader urword +optional true +longname keyword to print input to list file +description keyword to indicate that the list of exchange entries will be echoed to the listing file immediately after it is read. +mf6internal iprpak + +block options +name print_flows +type keyword +reader urword +optional true +longname keyword to print gwfgwf flows to list file +description keyword to indicate that the list of exchange flow rates will be printed to the listing file for every stress period in which ``SAVE BUDGET'' is specified in Output Control. +mf6internal iprflow + +block options +name save_flows +type keyword +reader urword +optional true +longname keyword to save GWFGWF flows +description keyword to indicate that cell-by-cell flow terms will be written to the budget file for each model provided that the Output Control for the models are set up with the ``BUDGET SAVE FILE'' option. +mf6internal ipakcb + +block options +name adv_scheme +type string +valid upstream central tvd +reader urword +optional true +longname advective scheme +description scheme used to solve the advection term. Can be upstream, central, or TVD. If not specified, upstream weighting is the default weighting scheme. + +block options +name cnd_xt3d_off +type keyword +shape +reader urword +optional true +longname deactivate xt3d +description deactivate the xt3d method for the dispersive flux and use the faster and less accurate approximation for this exchange. + +block options +name cnd_xt3d_rhs +type keyword +shape +reader urword +optional true +longname xt3d on right-hand side +description add xt3d dispersion terms to right-hand side, when possible, for this exchange. + +block options +name filein +type keyword +shape +in_record true +reader urword +tagged true +optional false +longname file keyword +description keyword to specify that an input filename is expected next. + +block options +name mve_filerecord +type record mve6 filein mve6_filename +shape +reader urword +tagged true +optional true +longname +description + +block options +name mve6 +type keyword +shape +in_record true +reader urword +tagged true +optional false +longname obs keyword +description keyword to specify that record corresponds to an energy transport mover file. + +block options +name mve6_filename +type string +preserve_case true +in_record true +tagged false +reader urword +optional false +longname mve6 input filename +description is the file name of the transport mover input file to apply to this exchange. Information for the transport mover are provided in the file provided with these keywords. + +block options +name obs_filerecord +type record obs6 filein obs6_filename +shape +reader urword +tagged true +optional true +longname +description + +block options +name obs6 +type keyword +shape +in_record true +reader urword +tagged true +optional false +longname obs keyword +description keyword to specify that record corresponds to an observations file. + +block options +name obs6_filename +type string +preserve_case true +in_record true +tagged false +reader urword +optional false +longname obs6 input filename +description is the file name of the observations input file for this exchange. See the ``Observation utility'' section for instructions for preparing observation input files. Table \ref{table:gwe-obstypetable} lists observation type(s) supported by the GWE-GWE package. + +block options +name dev_interfacemodel_on +type keyword +reader urword +optional true +longname activate interface model on exchange +description activates the interface model mechanism for calculating the coefficients at (and possibly near) the exchange. This keyword should only be used for development purposes. +mf6internal dev_ifmod_on + +# --------------------- exg gwegwe dimensions --------------------- + +block dimensions +name nexg +type integer +reader urword +optional false +longname number of exchanges +description keyword and integer value specifying the number of GWE-GWE exchanges. + + +# --------------------- exg gwegwe exchangedata --------------------- + +block exchangedata +name exchangedata +type recarray cellidm1 cellidm2 ihc cl1 cl2 hwva aux boundname +shape (nexg) +reader urword +optional false +longname exchange data +description + +block exchangedata +name cellidm1 +type integer +in_record true +tagged false +reader urword +optional false +longname cellid of first cell +description is the cellid of the cell in model 1 as specified in the simulation name file. For a structured grid that uses the DIS input file, CELLIDM1 is the layer, row, and column numbers of the cell. For a grid that uses the DISV input file, CELLIDM1 is the layer number and CELL2D number for the two cells. If the model uses the unstructured discretization (DISU) input file, then CELLIDM1 is the node number for the cell. +numeric_index true + +block exchangedata +name cellidm2 +type integer +in_record true +tagged false +reader urword +optional false +longname cellid of second cell +description is the cellid of the cell in model 2 as specified in the simulation name file. For a structured grid that uses the DIS input file, CELLIDM2 is the layer, row, and column numbers of the cell. For a grid that uses the DISV input file, CELLIDM2 is the layer number and CELL2D number for the two cells. If the model uses the unstructured discretization (DISU) input file, then CELLIDM2 is the node number for the cell. +numeric_index true + +block exchangedata +name ihc +type integer +in_record true +tagged false +reader urword +optional false +longname integer flag for connection type +description is an integer flag indicating the direction between node n and all of its m connections. If IHC = 0 then the connection is vertical. If IHC = 1 then the connection is horizontal. If IHC = 2 then the connection is horizontal for a vertically staggered grid. + +block exchangedata +name cl1 +type double precision +in_record true +tagged false +reader urword +optional false +longname connection distance +description is the distance between the center of cell 1 and the its shared face with cell 2. + +block exchangedata +name cl2 +type double precision +in_record true +tagged false +reader urword +optional false +longname connection distance +description is the distance between the center of cell 2 and the its shared face with cell 1. + +block exchangedata +name hwva +type double precision +in_record true +tagged false +reader urword +optional false +longname horizontal cell width or area for vertical flow +description is the horizontal width of the flow connection between cell 1 and cell 2 if IHC $>$ 0, or it is the area perpendicular to flow of the vertical connection between cell 1 and cell 2 if IHC = 0. + +block exchangedata +name aux +type double precision +in_record true +tagged false +shape (naux) +reader urword +optional true +longname auxiliary variables +description represents the values of the auxiliary variables for each GWEGWE Exchange. The values of auxiliary variables must be present for each exchange. The values must be specified in the order of the auxiliary variables specified in the OPTIONS block. +mf6internal auxvar + +block exchangedata +name boundname +type string +shape +tagged false +in_record true +reader urword +optional true +longname exchange boundname +description REPLACE boundname {'{#1}': 'GWE Exchange'} diff --git a/flopy/mf6/data/dfn/exg-gwfgwe.dfn b/flopy/mf6/data/dfn/exg-gwfgwe.dfn new file mode 100644 index 000000000..fe5410261 --- /dev/null +++ b/flopy/mf6/data/dfn/exg-gwfgwe.dfn @@ -0,0 +1,3 @@ +# --------------------- exg gwfgwe options --------------------- + + diff --git a/flopy/mf6/data/dfn/exg-gwfgwf.dfn b/flopy/mf6/data/dfn/exg-gwfgwf.dfn index 2232bfbdf..0f68acead 100644 --- a/flopy/mf6/data/dfn/exg-gwfgwf.dfn +++ b/flopy/mf6/data/dfn/exg-gwfgwf.dfn @@ -8,7 +8,8 @@ shape (naux) reader urword optional true longname keyword to specify aux variables -description an array of auxiliary variable names. There is no limit on the number of auxiliary variables that can be provided. Most auxiliary variables will not be used by the GWF-GWF Exchange, but they will be available for use by other parts of the program. If an auxiliary variable with the name ``ANGLDEGX'' is found, then this information will be used as the angle (provided in degrees) between the connection face normal and the x axis, where a value of zero indicates that a normal vector points directly along the positive x axis. The connection face normal is a normal vector on the cell face shared between the cell in model 1 and the cell in model 2 pointing away from the model 1 cell. Additional information on ``ANGLDEGX'' is provided in the description of the DISU Package. If an auxiliary variable with the name ``CDIST'' is found, then this information will be used as the straight-line connection distance, including the vertical component, between the two cell centers. Both ANGLDEGX and CDIST are required if specific discharge is calculated for either of the groundwater models. +description an array of auxiliary variable names. There is no limit on the number of auxiliary variables that can be provided. Most auxiliary variables will not be used by the GWF-GWF Exchange, but they will be available for use by other parts of the program. If an auxiliary variable with the name ``ANGLDEGX'' is found, then this information will be used as the angle (provided in degrees) between the connection face normal and the x axis, where a value of zero indicates that a normal vector points directly along the positive x axis. The connection face normal is a normal vector on the cell face shared between the cell in model 1 and the cell in model 2 pointing away from the model 1 cell. Additional information on ``ANGLDEGX'' and when it is required is provided in the description of the DISU Package. If an auxiliary variable with the name ``CDIST'' is found, then this information will be used in the calculation of specific discharge within model cells connected by the exchange. For a horizontal connection, CDIST should be specified as the horizontal distance between the cell centers, and should not include the vertical component. For vertical connections, CDIST should be specified as the difference in elevation between the two cell centers. Both ANGLDEGX and CDIST are required if specific discharge is calculated for either of the groundwater models. + block options name boundnames @@ -306,6 +307,7 @@ reader urword optional true longname auxiliary variables description represents the values of the auxiliary variables for each GWFGWF Exchange. The values of auxiliary variables must be present for each exchange. The values must be specified in the order of the auxiliary variables specified in the OPTIONS block. +mf6internal auxvar block exchangedata name boundname diff --git a/flopy/mf6/data/dfn/exg-gwfprt.dfn b/flopy/mf6/data/dfn/exg-gwfprt.dfn new file mode 100644 index 000000000..1008a7181 --- /dev/null +++ b/flopy/mf6/data/dfn/exg-gwfprt.dfn @@ -0,0 +1,3 @@ +# --------------------- exg gwfprt options --------------------- + + diff --git a/flopy/mf6/data/dfn/exg-gwtgwt.dfn b/flopy/mf6/data/dfn/exg-gwtgwt.dfn index f5aeb2419..11af74961 100644 --- a/flopy/mf6/data/dfn/exg-gwtgwt.dfn +++ b/flopy/mf6/data/dfn/exg-gwtgwt.dfn @@ -24,7 +24,7 @@ shape (naux) reader urword optional true longname keyword to specify aux variables -description an array of auxiliary variable names. There is no limit on the number of auxiliary variables that can be provided. Most auxiliary variables will not be used by the GWF-GWF Exchange, but they will be available for use by other parts of the program. If an auxiliary variable with the name ``ANGLDEGX'' is found, then this information will be used as the angle (provided in degrees) between the connection face normal and the x axis, where a value of zero indicates that a normal vector points directly along the positive x axis. The connection face normal is a normal vector on the cell face shared between the cell in model 1 and the cell in model 2 pointing away from the model 1 cell. Additional information on ``ANGLDEGX'' is provided in the description of the DISU Package. If an auxiliary variable with the name ``CDIST'' is found, then this information will be used as the straight-line connection distance, including the vertical component, between the two cell centers. Both ANGLDEGX and CDIST are required if specific discharge is calculated for either of the groundwater models. +description an array of auxiliary variable names. There is no limit on the number of auxiliary variables that can be provided. Most auxiliary variables will not be used by the GWT-GWT Exchange, but they will be available for use by other parts of the program. If an auxiliary variable with the name ``ANGLDEGX'' is found, then this information will be used as the angle (provided in degrees) between the connection face normal and the x axis, where a value of zero indicates that a normal vector points directly along the positive x axis. The connection face normal is a normal vector on the cell face shared between the cell in model 1 and the cell in model 2 pointing away from the model 1 cell. Additional information on ``ANGLDEGX'' is provided in the description of the DISU Package. ANGLDEGX must be specified if dispersion is simulated in the connected GWT models. block options name boundnames @@ -267,6 +267,7 @@ reader urword optional true longname auxiliary variables description represents the values of the auxiliary variables for each GWTGWT Exchange. The values of auxiliary variables must be present for each exchange. The values must be specified in the order of the auxiliary variables specified in the OPTIONS block. +mf6internal auxvar block exchangedata name boundname diff --git a/flopy/mf6/data/dfn/gwe-adv.dfn b/flopy/mf6/data/dfn/gwe-adv.dfn new file mode 100644 index 000000000..682ed4a75 --- /dev/null +++ b/flopy/mf6/data/dfn/gwe-adv.dfn @@ -0,0 +1,11 @@ +# --------------------- gwe adv options --------------------- + +block options +name scheme +type string +valid central upstream tvd +reader urword +optional true +longname advective scheme +description scheme used to solve the advection term. Can be upstream, central, or TVD. If not specified, upstream weighting is the default weighting scheme. + diff --git a/flopy/mf6/data/dfn/gwe-cnd.dfn b/flopy/mf6/data/dfn/gwe-cnd.dfn new file mode 100644 index 000000000..d9d51b301 --- /dev/null +++ b/flopy/mf6/data/dfn/gwe-cnd.dfn @@ -0,0 +1,101 @@ +# --------------------- gwe cnd options --------------------- + +block options +name xt3d_off +type keyword +shape +reader urword +optional true +longname deactivate xt3d +description deactivate the xt3d method and use the faster and less accurate approximation. This option may provide a fast and accurate solution under some circumstances, such as when flow aligns with the model grid, there is no mechanical dispersion, or when the longitudinal and transverse dispersivities are equal. This option may also be used to assess the computational demand of the XT3D approach by noting the run time differences with and without this option on. + +block options +name xt3d_rhs +type keyword +shape +reader urword +optional true +longname xt3d on right-hand side +description add xt3d terms to right-hand side, when possible. This option uses less memory, but may require more iterations. + +block options +name export_array_ascii +type keyword +reader urword +optional true +mf6internal export_ascii +longname export array variables to layered ascii files. +description keyword that specifies input griddata arrays should be written to layered ascii output files. + +# --------------------- gwe cnd griddata --------------------- + +block griddata +name alh +type double precision +shape (nodes) +reader readarray +layered true +optional true +longname longitudinal dispersivity in horizontal direction +description longitudinal dispersivity in horizontal direction. If flow is strictly horizontal, then this is the longitudinal dispersivity that will be used. If flow is not strictly horizontal or strictly vertical, then the longitudinal dispersivity is a function of both ALH and ALV. If mechanical dispersion is represented (by specifying any dispersivity values) then this array is required. + +block griddata +name alv +type double precision +shape (nodes) +reader readarray +layered true +optional true +longname longitudinal dispersivity in vertical direction +description longitudinal dispersivity in vertical direction. If flow is strictly vertical, then this is the longitudinal dispsersivity value that will be used. If flow is not strictly horizontal or strictly vertical, then the longitudinal dispersivity is a function of both ALH and ALV. If this value is not specified and mechanical dispersion is represented, then this array is set equal to ALH. + +block griddata +name ath1 +type double precision +shape (nodes) +reader readarray +layered true +optional true +longname transverse dispersivity in horizontal direction +description transverse dispersivity in horizontal direction. This is the transverse dispersivity value for the second ellipsoid axis. If flow is strictly horizontal and directed in the x direction (along a row for a regular grid), then this value controls spreading in the y direction. If mechanical dispersion is represented (by specifying any dispersivity values) then this array is required. + +block griddata +name ath2 +type double precision +shape (nodes) +reader readarray +layered true +optional true +longname transverse dispersivity in horizontal direction +description transverse dispersivity in horizontal direction. This is the transverse dispersivity value for the third ellipsoid axis. If flow is strictly horizontal and directed in the x direction (along a row for a regular grid), then this value controls spreading in the z direction. If this value is not specified and mechanical dispersion is represented, then this array is set equal to ATH1. + +block griddata +name atv +type double precision +shape (nodes) +reader readarray +layered true +optional true +longname transverse dispersivity when flow is in vertical direction +description transverse dispersivity when flow is in vertical direction. If flow is strictly vertical and directed in the z direction, then this value controls spreading in the x and y directions. If this value is not specified and mechanical dispersion is represented, then this array is set equal to ATH2. + +block griddata +name ktw +type double precision +shape (nodes) +reader readarray +layered true +optional true +longname thermal conductivity of the simulated fluid +description thermal conductivity of the simulated fluid. Note that the CND Package does not account for the tortuosity of the flow paths when solving for the conductive spread of heat. If tortuosity plays an important role in the thermal conductivity calculation, its effect should be reflected in the value specified for KTW. + +block griddata +name kts +type double precision +shape (nodes) +reader readarray +layered true +optional true +longname thermal conductivity of the aquifer material +description thermal conductivity of the aquifer material + diff --git a/flopy/mf6/data/dfn/gwe-ctp.dfn b/flopy/mf6/data/dfn/gwe-ctp.dfn new file mode 100644 index 000000000..d8dd2bc68 --- /dev/null +++ b/flopy/mf6/data/dfn/gwe-ctp.dfn @@ -0,0 +1,213 @@ +# --------------------- gwe ctp options --------------------- +# flopy multi-package + +block options +name auxiliary +type string +shape (naux) +reader urword +optional true +longname keyword to specify aux variables +description REPLACE auxnames {'{#1}': 'Groundwater Energy Transport'} + +block options +name auxmultname +type string +shape +reader urword +optional true +longname name of auxiliary variable for multiplier +description REPLACE auxmultname {'{#1}': 'temperature value'} + +block options +name boundnames +type keyword +shape +reader urword +optional true +longname +description REPLACE boundnames {'{#1}': 'constant temperature'} + +block options +name print_input +type keyword +reader urword +optional true +longname print input to listing file +description REPLACE print_input {'{#1}': 'constant temperature'} +mf6internal iprflow + +block options +name print_flows +type keyword +reader urword +optional true +longname print calculated flows to listing file +description REPLACE print_flows {'{#1}': 'constant temperature'} +mf6internal ipakcb + +block options +name save_flows +type keyword +reader urword +optional true +longname save constant temperature flows to budget file +description REPLACE save_flows {'{#1}': 'constant temperature'} +mf6internal iprpak + +block options +name ts_filerecord +type record ts6 filein ts6_filename +shape +reader urword +tagged true +optional true +longname +description + +block options +name ts6 +type keyword +shape +in_record true +reader urword +tagged true +optional false +longname time series keyword +description keyword to specify that record corresponds to a time-series file. + +block options +name filein +type keyword +shape +in_record true +reader urword +tagged true +optional false +longname file keyword +description keyword to specify that an input filename is expected next. + +block options +name ts6_filename +type string +preserve_case true +in_record true +reader urword +optional false +tagged false +longname file name of time series information +description REPLACE timeseriesfile {} + +block options +name obs_filerecord +type record obs6 filein obs6_filename +shape +reader urword +tagged true +optional true +longname +description + +block options +name obs6 +type keyword +shape +in_record true +reader urword +tagged true +optional false +longname obs keyword +description keyword to specify that record corresponds to an observations file. + +block options +name obs6_filename +type string +preserve_case true +in_record true +tagged false +reader urword +optional false +longname obs6 input filename +description REPLACE obs6_filename {'{#1}': 'Constant Temperature'} + + +# --------------------- gwe ctp dimensions --------------------- + +block dimensions +name maxbound +type integer +reader urword +optional false +longname maximum number of constant temperatures +description REPLACE maxbound {'{#1}': 'constant temperatures'} + + +# --------------------- gwe ctp period --------------------- + +block period +name iper +type integer +block_variable True +in_record true +tagged false +shape +valid +reader urword +optional false +longname stress period number +description REPLACE iper {} + +block period +name stress_period_data +type recarray cellid temp aux boundname +shape (maxbound) +reader urword +longname +description +mf6internal spd + +block period +name cellid +type integer +shape (ncelldim) +tagged false +in_record true +reader urword +longname cell identifier +description REPLACE cellid {} + +block period +name temp +type double precision +shape +tagged false +in_record true +reader urword +time_series true +longname constant temperature value +description is the constant temperature value. If the Options block includes a TIMESERIESFILE entry (see the ``Time-Variable Input'' section), values can be obtained from a time series by entering the time-series name in place of a numeric value. +mf6internal tspvar + +block period +name aux +type double precision +in_record true +tagged false +shape (naux) +reader urword +optional true +time_series true +longname auxiliary variables +description REPLACE aux {'{#1}': 'constant temperature'} +mf6internal auxvar + +block period +name boundname +type string +shape +tagged false +in_record true +reader urword +optional true +longname constant temperature name +description REPLACE boundname {'{#1}': 'constant temperature'} diff --git a/flopy/mf6/data/dfn/gwe-dis.dfn b/flopy/mf6/data/dfn/gwe-dis.dfn new file mode 100644 index 000000000..2326105aa --- /dev/null +++ b/flopy/mf6/data/dfn/gwe-dis.dfn @@ -0,0 +1,130 @@ +# --------------------- gwe dis options --------------------- + +block options +name length_units +type string +reader urword +optional true +longname model length units +description is the length units used for this model. Values can be ``FEET'', ``METERS'', or ``CENTIMETERS''. If not specified, the default is ``UNKNOWN''. + +block options +name nogrb +type keyword +reader urword +optional true +longname do not write binary grid file +description keyword to deactivate writing of the binary grid file. + +block options +name xorigin +type double precision +reader urword +optional true +longname x-position of the model grid origin +description x-position of the lower-left corner of the model grid. A default value of zero is assigned if not specified. The value for XORIGIN does not affect the model simulation, but it is written to the binary grid file so that postprocessors can locate the grid in space. + +block options +name yorigin +type double precision +reader urword +optional true +longname y-position of the model grid origin +description y-position of the lower-left corner of the model grid. If not specified, then a default value equal to zero is used. The value for YORIGIN does not affect the model simulation, but it is written to the binary grid file so that postprocessors can locate the grid in space. + +block options +name angrot +type double precision +reader urword +optional true +longname rotation angle +description counter-clockwise rotation angle (in degrees) of the lower-left corner of the model grid. If not specified, then a default value of 0.0 is assigned. The value for ANGROT does not affect the model simulation, but it is written to the binary grid file so that postprocessors can locate the grid in space. + +block options +name export_array_ascii +type keyword +reader urword +optional true +mf6internal export_ascii +longname export array variables to layered ascii files. +description keyword that specifies input griddata arrays should be written to layered ascii output files. + +# --------------------- gwe dis dimensions --------------------- + +block dimensions +name nlay +type integer +reader urword +optional false +longname number of layers +description is the number of layers in the model grid. +default_value 1 + +block dimensions +name nrow +type integer +reader urword +optional false +longname number of rows +description is the number of rows in the model grid. +default_value 2 + +block dimensions +name ncol +type integer +reader urword +optional false +longname number of columns +description is the number of columns in the model grid. +default_value 2 + +# --------------------- gwe dis griddata --------------------- + +block griddata +name delr +type double precision +shape (ncol) +reader readarray +longname spacing along a row +description is the column spacing in the row direction. +default_value 1.0 + +block griddata +name delc +type double precision +shape (nrow) +reader readarray +longname spacing along a column +description is the row spacing in the column direction. +default_value 1.0 + +block griddata +name top +type double precision +shape (ncol, nrow) +reader readarray +longname cell top elevation +description is the top elevation for each cell in the top model layer. +default_value 1.0 + +block griddata +name botm +type double precision +shape (ncol, nrow, nlay) +reader readarray +layered true +longname cell bottom elevation +description is the bottom elevation for each cell. +default_value 0. + +block griddata +name idomain +type integer +shape (ncol, nrow, nlay) +reader readarray +layered true +optional true +longname idomain existence array +description is an optional array that characterizes the existence status of a cell. If the IDOMAIN array is not specified, then all model cells exist within the solution. If the IDOMAIN value for a cell is 0, the cell does not exist in the simulation. Input and output values will be read and written for the cell, but internal to the program, the cell is excluded from the solution. If the IDOMAIN value for a cell is 1, the cell exists in the simulation. If the IDOMAIN value for a cell is -1, the cell does not exist in the simulation. Furthermore, the first existing cell above will be connected to the first existing cell below. This type of cell is referred to as a ``vertical pass through'' cell. + + diff --git a/flopy/mf6/data/dfn/gwe-disu.dfn b/flopy/mf6/data/dfn/gwe-disu.dfn new file mode 100644 index 000000000..1b2035600 --- /dev/null +++ b/flopy/mf6/data/dfn/gwe-disu.dfn @@ -0,0 +1,286 @@ +# --------------------- gwe disu options --------------------- + +block options +name length_units +type string +reader urword +optional true +longname model length units +description is the length units used for this model. Values can be ``FEET'', ``METERS'', or ``CENTIMETERS''. If not specified, the default is ``UNKNOWN''. + +block options +name nogrb +type keyword +reader urword +optional true +longname do not write binary grid file +description keyword to deactivate writing of the binary grid file. + +block options +name xorigin +type double precision +reader urword +optional true +longname x-position origin of the model grid coordinate system +description x-position of the origin used for model grid vertices. This value should be provided in a real-world coordinate system. A default value of zero is assigned if not specified. The value for XORIGIN does not affect the model simulation, but it is written to the binary grid file so that postprocessors can locate the grid in space. + +block options +name yorigin +type double precision +reader urword +optional true +longname y-position origin of the model grid coordinate system +description y-position of the origin used for model grid vertices. This value should be provided in a real-world coordinate system. If not specified, then a default value equal to zero is used. The value for YORIGIN does not affect the model simulation, but it is written to the binary grid file so that postprocessors can locate the grid in space. + +block options +name angrot +type double precision +reader urword +optional true +longname rotation angle +description counter-clockwise rotation angle (in degrees) of the model grid coordinate system relative to a real-world coordinate system. If not specified, then a default value of 0.0 is assigned. The value for ANGROT does not affect the model simulation, but it is written to the binary grid file so that postprocessors can locate the grid in space. + +block options +name vertical_offset_tolerance +type double precision +reader urword +optional true +default_value 0.0 +longname vertical length dimension for top and bottom checking +description checks are performed to ensure that the top of a cell is not higher than the bottom of an overlying cell. This option can be used to specify the tolerance that is used for checking. If top of a cell is above the bottom of an overlying cell by a value less than this tolerance, then the program will not terminate with an error. The default value is zero. This option should generally not be used. +mf6internal voffsettol + +block options +name export_array_ascii +type keyword +reader urword +optional true +mf6internal export_ascii +longname export array variables to layered ascii files. +description keyword that specifies input griddata arrays should be written to layered ascii output files. + +# --------------------- gwe disu dimensions --------------------- + +block dimensions +name nodes +type integer +reader urword +optional false +longname number of layers +description is the number of cells in the model grid. + +block dimensions +name nja +type integer +reader urword +optional false +longname number of columns +description is the sum of the number of connections and NODES. When calculating the total number of connections, the connection between cell n and cell m is considered to be different from the connection between cell m and cell n. Thus, NJA is equal to the total number of connections, including n to m and m to n, and the total number of cells. + +block dimensions +name nvert +type integer +reader urword +optional true +longname number of vertices +description is the total number of (x, y) vertex pairs used to define the plan-view shape of each cell in the model grid. If NVERT is not specified or is specified as zero, then the VERTICES and CELL2D blocks below are not read. NVERT and the accompanying VERTICES and CELL2D blocks should be specified for most simulations. If the XT3D or SAVE\_SPECIFIC\_DISCHARGE options are specified in the NPF Package, then this information is required. + +# --------------------- gwe disu griddata --------------------- + +block griddata +name top +type double precision +shape (nodes) +reader readarray +longname cell top elevation +description is the top elevation for each cell in the model grid. + +block griddata +name bot +type double precision +shape (nodes) +reader readarray +longname cell bottom elevation +description is the bottom elevation for each cell. + +block griddata +name area +type double precision +shape (nodes) +reader readarray +longname cell surface area +description is the cell surface area (in plan view). + +block griddata +name idomain +type integer +shape (nodes) +reader readarray +layered false +optional true +longname idomain existence array +description is an optional array that characterizes the existence status of a cell. If the IDOMAIN array is not specified, then all model cells exist within the solution. If the IDOMAIN value for a cell is 0, the cell does not exist in the simulation. Input and output values will be read and written for the cell, but internal to the program, the cell is excluded from the solution. If the IDOMAIN value for a cell is 1 or greater, the cell exists in the simulation. IDOMAIN values of -1 cannot be specified for the DISU Package. + +# --------------------- gwe disu connectiondata --------------------- + +block connectiondata +name iac +type integer +shape (nodes) +reader readarray +longname number of cell connections +description is the number of connections (plus 1) for each cell. The sum of all the entries in IAC must be equal to NJA. + +block connectiondata +name ja +type integer +shape (nja) +reader readarray +longname grid connectivity +description is a list of cell number (n) followed by its connecting cell numbers (m) for each of the m cells connected to cell n. The number of values to provide for cell n is IAC(n). This list is sequentially provided for the first to the last cell. The first value in the list must be cell n itself, and the remaining cells must be listed in an increasing order (sorted from lowest number to highest). Note that the cell and its connections are only supplied for the GWE cells and their connections to the other GWE cells. Also note that the JA list input may be divided such that every node and its connectivity list can be on a separate line for ease in readability of the file. To further ease readability of the file, the node number of the cell whose connectivity is subsequently listed, may be expressed as a negative number, the sign of which is subsequently converted to positive by the code. +numeric_index true +jagged_array iac + +block connectiondata +name ihc +type integer +shape (nja) +reader readarray +longname connection type +description is an index array indicating the direction between node n and all of its m connections. If IHC = 0 then cell n and cell m are connected in the vertical direction. Cell n overlies cell m if the cell number for n is less than m; cell m overlies cell n if the cell number for m is less than n. If IHC = 1 then cell n and cell m are connected in the horizontal direction. If IHC = 2 then cell n and cell m are connected in the horizontal direction, and the connection is vertically staggered. A vertically staggered connection is one in which a cell is horizontally connected to more than one cell in a horizontal connection. +jagged_array iac + +block connectiondata +name cl12 +type double precision +shape (nja) +reader readarray +longname connection lengths +description is the array containing connection lengths between the center of cell n and the shared face with each adjacent m cell. +jagged_array iac + +block connectiondata +name hwva +type double precision +shape (nja) +reader readarray +longname connection lengths +description is a symmetric array of size NJA. For horizontal connections, entries in HWVA are the horizontal width perpendicular to flow. For vertical connections, entries in HWVA are the vertical area for flow. Thus, values in the HWVA array contain dimensions of both length and area. Entries in the HWVA array have a one-to-one correspondence with the connections specified in the JA array. Likewise, there is a one-to-one correspondence between entries in the HWVA array and entries in the IHC array, which specifies the connection type (horizontal or vertical). Entries in the HWVA array must be symmetric; the program will terminate with an error if the value for HWVA for an n to m connection does not equal the value for HWVA for the corresponding n to m connection. +jagged_array iac + +block connectiondata +name angldegx +type double precision +optional true +shape (nja) +reader readarray +longname angle of face normal to connection +description is the angle (in degrees) between the horizontal x-axis and the outward normal to the face between a cell and its connecting cells. The angle varies between zero and 360.0 degrees, where zero degrees points in the positive x-axis direction, and 90 degrees points in the positive y-axis direction. ANGLDEGX is only needed if horizontal anisotropy is specified in the NPF Package, if the XT3D option is used in the NPF Package, or if the SAVE\_SPECIFIC\_DISCHARGE option is specified in the NPF Package. ANGLDEGX does not need to be specified if these conditions are not met. ANGLDEGX is of size NJA; values specified for vertical connections and for the diagonal position are not used. Note that ANGLDEGX is read in degrees, which is different from MODFLOW-USG, which reads a similar variable (ANGLEX) in radians. +jagged_array iac + +# --------------------- gwe disu vertices --------------------- + +block vertices +name vertices +type recarray iv xv yv +shape (nvert) +reader urword +optional false +longname vertices data +description + +block vertices +name iv +type integer +in_record true +tagged false +reader urword +optional false +longname vertex number +description is the vertex number. Records in the VERTICES block must be listed in consecutive order from 1 to NVERT. +numeric_index true + +block vertices +name xv +type double precision +in_record true +tagged false +reader urword +optional false +longname x-coordinate for vertex +description is the x-coordinate for the vertex. + +block vertices +name yv +type double precision +in_record true +tagged false +reader urword +optional false +longname y-coordinate for vertex +description is the y-coordinate for the vertex. + + +# --------------------- gwe disu cell2d --------------------- + +block cell2d +name cell2d +type recarray icell2d xc yc ncvert icvert +shape (nodes) +reader urword +optional false +longname cell2d data +description + +block cell2d +name icell2d +type integer +in_record true +tagged false +reader urword +optional false +longname cell2d number +description is the cell2d number. Records in the CELL2D block must be listed in consecutive order from 1 to NODES. +numeric_index true + +block cell2d +name xc +type double precision +in_record true +tagged false +reader urword +optional false +longname x-coordinate for cell center +description is the x-coordinate for the cell center. + +block cell2d +name yc +type double precision +in_record true +tagged false +reader urword +optional false +longname y-coordinate for cell center +description is the y-coordinate for the cell center. + +block cell2d +name ncvert +type integer +in_record true +tagged false +reader urword +optional false +longname number of cell vertices +description is the number of vertices required to define the cell. There may be a different number of vertices for each cell. + +block cell2d +name icvert +type integer +shape (ncvert) +in_record true +tagged false +reader urword +optional false +longname array of vertex numbers +description is an array of integer values containing vertex numbers (in the VERTICES block) used to define the cell. Vertices must be listed in clockwise order. +numeric_index true diff --git a/flopy/mf6/data/dfn/gwe-disv.dfn b/flopy/mf6/data/dfn/gwe-disv.dfn new file mode 100644 index 000000000..ff91ef0cf --- /dev/null +++ b/flopy/mf6/data/dfn/gwe-disv.dfn @@ -0,0 +1,213 @@ +# --------------------- gwe disv options --------------------- + +block options +name length_units +type string +reader urword +optional true +longname model length units +description is the length units used for this model. Values can be ``FEET'', ``METERS'', or ``CENTIMETERS''. If not specified, the default is ``UNKNOWN''. + +block options +name nogrb +type keyword +reader urword +optional true +longname do not write binary grid file +description keyword to deactivate writing of the binary grid file. + +block options +name xorigin +type double precision +reader urword +optional true +longname x-position origin of the model grid coordinate system +description x-position of the origin used for model grid vertices. This value should be provided in a real-world coordinate system. A default value of zero is assigned if not specified. The value for XORIGIN does not affect the model simulation, but it is written to the binary grid file so that postprocessors can locate the grid in space. + +block options +name yorigin +type double precision +reader urword +optional true +longname y-position origin of the model grid coordinate system +description y-position of the origin used for model grid vertices. This value should be provided in a real-world coordinate system. If not specified, then a default value equal to zero is used. The value for YORIGIN does not affect the model simulation, but it is written to the binary grid file so that postprocessors can locate the grid in space. + +block options +name angrot +type double precision +reader urword +optional true +longname rotation angle +description counter-clockwise rotation angle (in degrees) of the model grid coordinate system relative to a real-world coordinate system. If not specified, then a default value of 0.0 is assigned. The value for ANGROT does not affect the model simulation, but it is written to the binary grid file so that postprocessors can locate the grid in space. + +block options +name export_array_ascii +type keyword +reader urword +optional true +mf6internal export_ascii +longname export array variables to layered ascii files. +description keyword that specifies input griddata arrays should be written to layered ascii output files. + +# --------------------- gwe disv dimensions --------------------- + +block dimensions +name nlay +type integer +reader urword +optional false +longname number of layers +description is the number of layers in the model grid. + +block dimensions +name ncpl +type integer +reader urword +optional false +longname number of cells per layer +description is the number of cells per layer. This is a constant value for the grid and it applies to all layers. + +block dimensions +name nvert +type integer +reader urword +optional false +longname number of columns +description is the total number of (x, y) vertex pairs used to characterize the horizontal configuration of the model grid. + +# --------------------- gwe disv griddata --------------------- + +block griddata +name top +type double precision +shape (ncpl) +reader readarray +longname model top elevation +description is the top elevation for each cell in the top model layer. + +block griddata +name botm +type double precision +shape (ncpl, nlay) +reader readarray +layered true +longname model bottom elevation +description is the bottom elevation for each cell. + +block griddata +name idomain +type integer +shape (ncpl, nlay) +reader readarray +layered true +optional true +longname idomain existence array +description is an optional array that characterizes the existence status of a cell. If the IDOMAIN array is not specified, then all model cells exist within the solution. If the IDOMAIN value for a cell is 0, the cell does not exist in the simulation. Input and output values will be read and written for the cell, but internal to the program, the cell is excluded from the solution. If the IDOMAIN value for a cell is 1, the cell exists in the simulation. If the IDOMAIN value for a cell is -1, the cell does not exist in the simulation. Furthermore, the first existing cell above will be connected to the first existing cell below. This type of cell is referred to as a ``vertical pass through'' cell. + + +# --------------------- gwe disv vertices --------------------- + +block vertices +name vertices +type recarray iv xv yv +shape (nvert) +reader urword +optional false +longname vertices data +description + +block vertices +name iv +type integer +in_record true +tagged false +reader urword +optional false +longname vertex number +description is the vertex number. Records in the VERTICES block must be listed in consecutive order from 1 to NVERT. +numeric_index true + +block vertices +name xv +type double precision +in_record true +tagged false +reader urword +optional false +longname x-coordinate for vertex +description is the x-coordinate for the vertex. + +block vertices +name yv +type double precision +in_record true +tagged false +reader urword +optional false +longname y-coordinate for vertex +description is the y-coordinate for the vertex. + + +# --------------------- gwe disv cell2d --------------------- + +block cell2d +name cell2d +type recarray icell2d xc yc ncvert icvert +shape (ncpl) +reader urword +optional false +longname cell2d data +description + +block cell2d +name icell2d +type integer +in_record true +tagged false +reader urword +optional false +longname cell2d number +description is the CELL2D number. Records in the CELL2D block must be listed in consecutive order from the first to the last. +numeric_index true + +block cell2d +name xc +type double precision +in_record true +tagged false +reader urword +optional false +longname x-coordinate for cell center +description is the x-coordinate for the cell center. + +block cell2d +name yc +type double precision +in_record true +tagged false +reader urword +optional false +longname y-coordinate for cell center +description is the y-coordinate for the cell center. + +block cell2d +name ncvert +type integer +in_record true +tagged false +reader urword +optional false +longname number of cell vertices +description is the number of vertices required to define the cell. There may be a different number of vertices for each cell. + +block cell2d +name icvert +type integer +shape (ncvert) +in_record true +tagged false +reader urword +optional false +longname array of vertex numbers +description is an array of integer values containing vertex numbers (in the VERTICES block) used to define the cell. Vertices must be listed in clockwise order. Cells that are connected must share vertices. +numeric_index true diff --git a/flopy/mf6/data/dfn/gwe-esl.dfn b/flopy/mf6/data/dfn/gwe-esl.dfn new file mode 100644 index 000000000..534db1b02 --- /dev/null +++ b/flopy/mf6/data/dfn/gwe-esl.dfn @@ -0,0 +1,205 @@ +# --------------------- gwe esl options --------------------- + +block options +name auxiliary +type string +shape (naux) +reader urword +optional true +longname keyword to specify aux variables +description REPLACE auxnames {'{#1}': 'Groundwater Energy Transport'} + +block options +name auxmultname +type string +shape +reader urword +optional true +longname name of auxiliary variable for multiplier +description REPLACE auxmultname {'{#1}': 'energy loading rate'} + +block options +name boundnames +type keyword +shape +reader urword +optional true +longname +description REPLACE boundnames {'{#1}': 'energy source loading'} + +block options +name print_input +type keyword +reader urword +optional true +longname print input to listing file +description REPLACE print_input {'{#1}': 'energy source loading'} + +block options +name print_flows +type keyword +reader urword +optional true +longname print calculated flows to listing file +description REPLACE print_flows {'{#1}': 'energy source loading'} + +block options +name save_flows +type keyword +reader urword +optional true +longname save well flows to budget file +description REPLACE save_flows {'{#1}': 'energy source loading'} + +block options +name ts_filerecord +type record ts6 filein ts6_filename +shape +reader urword +tagged true +optional true +longname +description + +block options +name ts6 +type keyword +shape +in_record true +reader urword +tagged true +optional false +longname head keyword +description keyword to specify that record corresponds to a time-series file. + +block options +name filein +type keyword +shape +in_record true +reader urword +tagged true +optional false +longname file keyword +description keyword to specify that an input filename is expected next. + +block options +name ts6_filename +type string +preserve_case true +in_record true +reader urword +optional false +tagged false +longname file name of time series information +description REPLACE timeseriesfile {} + +block options +name obs_filerecord +type record obs6 filein obs6_filename +shape +reader urword +tagged true +optional true +longname +description + +block options +name obs6 +type keyword +shape +in_record true +reader urword +tagged true +optional false +longname obs keyword +description keyword to specify that record corresponds to an observations file. + +block options +name obs6_filename +type string +preserve_case true +in_record true +tagged false +reader urword +optional false +longname obs6 input filename +description REPLACE obs6_filename {'{#1}': 'Energy Source Loading'} + +# --------------------- gwe esl dimensions --------------------- + +block dimensions +name maxbound +type integer +reader urword +optional false +longname maximum number of sources +description REPLACE maxbound {'{#1}': 'sources'} + + +# --------------------- gwe esl period --------------------- + +block period +name iper +type integer +block_variable True +in_record true +tagged false +shape +valid +reader urword +optional false +longname stress period number +description REPLACE iper {} + +block period +name stress_period_data +type recarray cellid senerrate aux boundname +shape (maxbound) +reader urword +longname +description + +block period +name cellid +type integer +shape (ncelldim) +tagged false +in_record true +reader urword +longname cell identifier +description REPLACE cellid {} + +block period +name senerrate +type double precision +shape +tagged false +in_record true +reader urword +time_series true +longname energy source loading rate +description is the energy source loading rate. A positive value indicates addition of energy and a negative value indicates removal of energy. If the Options block includes a TIMESERIESFILE entry (see the ``Time-Variable Input'' section), values can be obtained from a time series by entering the time-series name in place of a numeric value. + +block period +name aux +type double precision +in_record true +tagged false +shape (naux) +reader urword +optional true +time_series true +longname auxiliary variables +description REPLACE aux {'{#1}': 'energy source'} + +block period +name boundname +type string +shape +tagged false +in_record true +reader urword +optional true +longname well name +description REPLACE boundname {'{#1}': 'energy source'} diff --git a/flopy/mf6/data/dfn/gwe-est.dfn b/flopy/mf6/data/dfn/gwe-est.dfn new file mode 100644 index 000000000..22181237c --- /dev/null +++ b/flopy/mf6/data/dfn/gwe-est.dfn @@ -0,0 +1,106 @@ +# --------------------- gwe est options --------------------- + +block options +name save_flows +type keyword +reader urword +optional true +longname save calculated flows to budget file +description REPLACE save_flows {'{#1}': 'EST'} + +block options +name zero_order_decay +type keyword +reader urword +optional true +longname activate zero-order decay +description is a text keyword to indicate that zero-order decay will occur. Use of this keyword requires that DECAY and DECAY\_SORBED (if sorption is active) are specified in the GRIDDATA block. + +block options +name latent_heat_vaporization +type keyword +reader urword +optional true +longname activate cooling associated with evaporation +description is a text keyword to indicate that cooling associated with evaporation will occur. Use of this keyword requires that LATHEATVAP are specified in the GRIDDATA block. While the EST package does not simulate evaporation, multiple other packages in a GWE simulation may. For example, evaporation may occur from the surface of streams or lakes. Owing to the energy consumed by the change in phase, the latent heat of vaporization is required. + +# --------------------- gwe est griddata --------------------- + +block griddata +name porosity +type double precision +shape (nodes) +reader readarray +layered true +longname porosity +description is the mobile domain porosity, defined as the mobile domain pore volume per mobile domain volume. The GWE model does not support the concept of an immobile domain in the context of heat transport. + +block griddata +name decay +type double precision +shape (nodes) +reader readarray +layered true +optional true +longname aqueous phase decay rate coefficient +description is the rate coefficient for zero-order decay for the aqueous phase of the mobile domain. A negative value indicates heat (energy) production. The dimensions of decay for zero-order decay is energy per length cubed per time. Zero-order decay will have no effect on simulation results unless zero-order decay is specified in the options block. + +block griddata +name cps +type double precision +shape (nodes) +reader readarray +layered true +longname heat capacity of the aquifer material +description is the mass-based heat capacity of dry solids (aquifer material). For example, units of J/kg/C may be used (or equivalent). + +block griddata +name rhos +type double precision +shape (nodes) +reader readarray +layered true +longname density of aquifer material +description is a user-specified value of the density of aquifer material not considering the voids. Value will remain fixed for the entire simulation. For example, if working in SI units, values may be entered as kilograms per cubic meter. + +# --------------------- gwe est packagedata --------------------- + +block packagedata +name packagedata +type recarray cpw rhow latheatvap +shape +reader urword +longname +description + +block packagedata +name cpw +type double precision +shape +tagged false +in_record true +reader urword +longname heat capacity of water +description is the mass-based heat capacity of the simulated fluid. For example, units of J/kg/C may be used (or equivalent). + +block packagedata +name rhow +type double precision +shape +tagged false +in_record true +reader urword +longname density of water +description is a user-specified value of the density of water. Value will remain fixed for the entire simulation. For example, if working in SI units, values may be entered as kilograms per cubic meter. + + +block packagedata +name latheatvap +type double precision +shape +tagged false +in_record true +reader urword +longname latent heat of vaporization +description is the user-specified value for the latent heat of vaporization. For example, if working in SI units, values may be entered as kJ/kg. + diff --git a/flopy/mf6/data/dfn/gwe-fmi.dfn b/flopy/mf6/data/dfn/gwe-fmi.dfn new file mode 100644 index 000000000..fb71131e6 --- /dev/null +++ b/flopy/mf6/data/dfn/gwe-fmi.dfn @@ -0,0 +1,58 @@ +# --------------------- gwe fmi options --------------------- + +block options +name save_flows +type keyword +reader urword +optional true +longname save calculated flow imbalance correction to budget file +description REPLACE save_flows {'{#1}': 'FMI'} + +block options +name flow_imbalance_correction +type keyword +reader urword +optional true +longname correct for flow imbalance +description correct for an imbalance in flows by assuming that any residual flow error comes in or leaves at the temperature of the cell. When this option is activated, the GWE Model budget written to the listing file will contain two additional entries: FLOW-ERROR and FLOW-CORRECTION. These two entries will be equal but opposite in sign. The FLOW-CORRECTION term is a mass flow that is added to offset the error caused by an imprecise flow balance. If these terms are not relatively small, the flow model should be rerun with stricter convergence tolerances. + +# --------------------- gwe fmi packagedata --------------------- + +block packagedata +name packagedata +type recarray flowtype filein fname +reader urword +optional false +longname flowtype list +description + +block packagedata +name flowtype +in_record true +type string +tagged false +reader urword +longname flow type +description is the word GWFBUDGET, GWFHEAD, GWFMOVER or the name of an advanced GWF stress package. If GWFBUDGET is specified, then the corresponding file must be a budget file from a previous GWF Model run. If an advanced GWF stress package name appears then the corresponding file must be the budget file saved by a LAK, SFR, MAW or UZF Package. + +block packagedata +name filein +type keyword +shape +in_record true +reader urword +tagged true +optional false +longname file keyword +description keyword to specify that an input filename is expected next. + +block packagedata +name fname +in_record true +type string +preserve_case true +tagged false +reader urword +longname file name +description is the name of the file containing flows. The path to the file should be included if the file is not located in the folder where the program was run. + diff --git a/flopy/mf6/data/dfn/gwe-ic.dfn b/flopy/mf6/data/dfn/gwe-ic.dfn new file mode 100644 index 000000000..6bd80b3de --- /dev/null +++ b/flopy/mf6/data/dfn/gwe-ic.dfn @@ -0,0 +1,22 @@ +# --------------------- gwe ic options --------------------- + +block options +name export_array_ascii +type keyword +reader urword +optional true +mf6internal export_ascii +longname export array variables to layered ascii files. +description keyword that specifies input griddata arrays should be written to layered ascii output files. + +# --------------------- gwe ic griddata --------------------- + +block griddata +name strt +type double precision +shape (nodes) +reader readarray +layered true +longname starting temperature +description is the initial (starting) temperature---that is, the temperature at the beginning of the GWE Model simulation. STRT must be specified for all GWE Model simulations. One value is read for every model cell. +default_value 0.0 diff --git a/flopy/mf6/data/dfn/gwe-lke.dfn b/flopy/mf6/data/dfn/gwe-lke.dfn new file mode 100644 index 000000000..b59b50420 --- /dev/null +++ b/flopy/mf6/data/dfn/gwe-lke.dfn @@ -0,0 +1,481 @@ +# --------------------- gwe lke options --------------------- +# flopy multi-package + +block options +name flow_package_name +type string +shape +reader urword +optional true +longname keyword to specify name of corresponding flow package +description keyword to specify the name of the corresponding flow package. If not specified, then the corresponding flow package must have the same name as this advanced transport package (the name associated with this package in the GWE name file). + +block options +name auxiliary +type string +shape (naux) +reader urword +optional true +longname keyword to specify aux variables +description REPLACE auxnames {'{#1}': 'Groundwater Energy Transport'} + +block options +name flow_package_auxiliary_name +type string +shape +reader urword +optional true +longname keyword to specify name of temperature auxiliary variable in flow package +description keyword to specify the name of an auxiliary variable in the corresponding flow package. If specified, then the simulated temperatures from this advanced transport package will be copied into the auxiliary variable specified with this name. Note that the flow package must have an auxiliary variable with this name or the program will terminate with an error. If the flows for this advanced transport package are read from a file, then this option will have no effect. + +block options +name boundnames +type keyword +shape +reader urword +optional true +longname +description REPLACE boundnames {'{#1}': 'lake'} + +block options +name print_input +type keyword +reader urword +optional true +longname print input to listing file +description REPLACE print_input {'{#1}': 'lake'} + +block options +name print_temperature +type keyword +reader urword +optional true +longname print calculated temperatures to listing file +description REPLACE print_temperature {'{#1}': 'lake', '{#2}': 'temperature', '{#3}': 'TEMPERATURE'} + +block options +name print_flows +type keyword +reader urword +optional true +longname print calculated flows to listing file +description REPLACE print_flows {'{#1}': 'lake'} + +block options +name save_flows +type keyword +reader urword +optional true +longname save lake flows to budget file +description REPLACE save_flows {'{#1}': 'lake'} + +block options +name temperature_filerecord +type record temperature fileout tempfile +shape +reader urword +tagged true +optional true +longname +description + +block options +name temperature +type keyword +shape +in_record true +reader urword +tagged true +optional false +longname stage keyword +description keyword to specify that record corresponds to temperature. + +block options +name tempfile +type string +preserve_case true +shape +in_record true +reader urword +tagged false +optional false +longname file keyword +description name of the binary output file to write temperature information. + +block options +name budget_filerecord +type record budget fileout budgetfile +shape +reader urword +tagged true +optional true +longname +description + +block options +name budget +type keyword +shape +in_record true +reader urword +tagged true +optional false +longname budget keyword +description keyword to specify that record corresponds to the budget. + +block options +name fileout +type keyword +shape +in_record true +reader urword +tagged true +optional false +longname file keyword +description keyword to specify that an output filename is expected next. + +block options +name budgetfile +type string +preserve_case true +shape +in_record true +reader urword +tagged false +optional false +longname file keyword +description name of the binary output file to write budget information. + +block options +name budgetcsv_filerecord +type record budgetcsv fileout budgetcsvfile +shape +reader urword +tagged true +optional true +longname +description + +block options +name budgetcsv +type keyword +shape +in_record true +reader urword +tagged true +optional false +longname budget keyword +description keyword to specify that record corresponds to the budget CSV. + +block options +name budgetcsvfile +type string +preserve_case true +shape +in_record true +reader urword +tagged false +optional false +longname file keyword +description name of the comma-separated value (CSV) output file to write budget summary information. A budget summary record will be written to this file for each time step of the simulation. + +block options +name ts_filerecord +type record ts6 filein ts6_filename +shape +reader urword +tagged true +optional true +longname +description + +block options +name ts6 +type keyword +shape +in_record true +reader urword +tagged true +optional false +longname head keyword +description keyword to specify that record corresponds to a time-series file. + +block options +name filein +type keyword +shape +in_record true +reader urword +tagged true +optional false +longname file keyword +description keyword to specify that an input filename is expected next. + +block options +name ts6_filename +type string +preserve_case true +in_record true +reader urword +optional false +tagged false +longname file name of time series information +description REPLACE timeseriesfile {} + +block options +name obs_filerecord +type record obs6 filein obs6_filename +shape +reader urword +tagged true +optional true +longname +description + +block options +name obs6 +type keyword +shape +in_record true +reader urword +tagged true +optional false +longname obs keyword +description keyword to specify that record corresponds to an observations file. + +block options +name obs6_filename +type string +preserve_case true +in_record true +tagged false +reader urword +optional false +longname obs6 input filename +description REPLACE obs6_filename {'{#1}': 'LKE'} + + +# --------------------- gwe lke packagedata --------------------- + +block packagedata +name packagedata +type recarray lakeno strt ktf rbthcnd aux boundname +shape (maxbound) +reader urword +longname +description + +block packagedata +name lakeno +type integer +shape +tagged false +in_record true +reader urword +longname lake number for this entry +description integer value that defines the lake number associated with the specified PACKAGEDATA data on the line. LAKENO must be greater than zero and less than or equal to NLAKES. Lake information must be specified for every lake or the program will terminate with an error. The program will also terminate with an error if information for a lake is specified more than once. +numeric_index true + +block packagedata +name strt +type double precision +shape +tagged false +in_record true +reader urword +longname starting lake temperature +description real value that defines the starting temperature for the lake. + +block packagedata +name ktf +type double precision +shape +tagged false +in_record true +reader urword +longname boundary thermal conductivity +description is the thermal conductivity of the of the interface between the aquifer cell and the lake. + +block packagedata +name rbthcnd +type double precision +shape +tagged false +in_record true +reader urword +longname streambed thickness +description real value that defines the thickness of the lakebed material through which conduction occurs. Must be greater than 0. + +block packagedata +name aux +type double precision +in_record true +tagged false +shape (naux) +reader urword +time_series true +optional true +longname auxiliary variables +description REPLACE aux {'{#1}': 'lake'} + +block packagedata +name boundname +type string +shape +tagged false +in_record true +reader urword +optional true +longname lake name +description REPLACE boundname {'{#1}': 'lake'} + + +# --------------------- gwe lke period --------------------- + +block period +name iper +type integer +block_variable True +in_record true +tagged false +shape +valid +reader urword +optional false +longname stress period number +description REPLACE iper {} + +block period +name lakeperioddata +type recarray lakeno laksetting +shape +reader urword +longname +description + +block period +name lakeno +type integer +shape +tagged false +in_record true +reader urword +longname lake number for this entry +description integer value that defines the lake number associated with the specified PERIOD data on the line. LAKENO must be greater than zero and less than or equal to NLAKES. +numeric_index true + +block period +name laksetting +type keystring status temperature rainfall evaporation runoff ext-inflow auxiliaryrecord +shape +tagged false +in_record true +reader urword +longname +description line of information that is parsed into a keyword and values. Keyword values that can be used to start the LAKSETTING string include: STATUS, TEMPERATURE, RAINFALL, EVAPORATION, RUNOFF, and AUXILIARY. These settings are used to assign the temperature associated with the corresponding flow terms. Temperatures cannot be specified for all flow terms. For example, the Lake Package supports a ``WITHDRAWAL'' flow term. If this withdrawal term is active, then water will be withdrawn from the lake at the calculated temperature of the lake. + +block period +name status +type string +shape +tagged true +in_record true +reader urword +longname lake temperature status +description keyword option to define lake status. STATUS can be ACTIVE, INACTIVE, or CONSTANT. By default, STATUS is ACTIVE, which means that temperature will be calculated for the lake. If a lake is inactive, then there will be no solute mass fluxes into or out of the lake and the inactive value will be written for the lake temperature. If a lake is constant, then the temperature for the lake will be fixed at the user specified value. + +block period +name temperature +type string +shape +tagged true +in_record true +time_series true +reader urword +longname lake temperature +description real or character value that defines the temperature for the lake. The specified TEMPERATURE is only applied if the lake is a constant temperature lake. If the Options block includes a TIMESERIESFILE entry (see the ``Time-Variable Input'' section), values can be obtained from a time series by entering the time-series name in place of a numeric value. + +block period +name rainfall +type string +shape +tagged true +in_record true +reader urword +time_series true +longname rainfall temperature +description real or character value that defines the rainfall temperature for the lake. If the Options block includes a TIMESERIESFILE entry (see the ``Time-Variable Input'' section), values can be obtained from a time series by entering the time-series name in place of a numeric value. + +block period +name evaporation +type string +shape +tagged true +in_record true +reader urword +time_series true +longname evaporation temperature +description real or character value that defines the temperature of evaporated water $(^{\circ}C)$ for the reach. If this temperature value is larger than the simulated temperature in the reach, then the evaporated water will be removed at the same temperature as the reach. If the Options block includes a TIMESERIESFILE entry (see the ``Time-Variable Input'' section), values can be obtained from a time series by entering the time-series name in place of a numeric value. + + +block period +name runoff +type string +shape +tagged true +in_record true +reader urword +time_series true +longname runoff temperature +description real or character value that defines the temperature of runoff for the lake. Value must be greater than or equal to zero. If the Options block includes a TIMESERIESFILE entry (see the ``Time-Variable Input'' section), values can be obtained from a time series by entering the time-series name in place of a numeric value. + +block period +name ext-inflow +type string +shape +tagged true +in_record true +reader urword +time_series true +longname ext-inflow temperature +description real or character value that defines the temperature of external inflow for the lake. Value must be greater than or equal to zero. If the Options block includes a TIMESERIESFILE entry (see the ``Time-Variable Input'' section), values can be obtained from a time series by entering the time-series name in place of a numeric value. + +block period +name auxiliaryrecord +type record auxiliary auxname auxval +shape +tagged +in_record true +reader urword +longname +description + +block period +name auxiliary +type keyword +shape +in_record true +reader urword +longname +description keyword for specifying auxiliary variable. + +block period +name auxname +type string +shape +tagged false +in_record true +reader urword +longname +description name for the auxiliary variable to be assigned AUXVAL. AUXNAME must match one of the auxiliary variable names defined in the OPTIONS block. If AUXNAME does not match one of the auxiliary variable names defined in the OPTIONS block the data are ignored. + +block period +name auxval +type double precision +shape +tagged false +in_record true +reader urword +time_series true +longname auxiliary variable value +description value for the auxiliary variable. If the Options block includes a TIMESERIESFILE entry (see the ``Time-Variable Input'' section), values can be obtained from a time series by entering the time-series name in place of a numeric value. diff --git a/flopy/mf6/data/dfn/gwe-mve.dfn b/flopy/mf6/data/dfn/gwe-mve.dfn new file mode 100644 index 000000000..e67e76ba4 --- /dev/null +++ b/flopy/mf6/data/dfn/gwe-mve.dfn @@ -0,0 +1,106 @@ +# --------------------- gwe mve options --------------------- +# flopy subpackage mve_filerecord mve perioddata perioddata +# flopy parent_name_type parent_model_or_package MFModel/MFPackage + +block options +name print_input +type keyword +reader urword +optional true +longname print input to listing file +description REPLACE print_input {'{#1}': 'mover'} + +block options +name print_flows +type keyword +reader urword +optional true +longname print calculated flows to listing file +description REPLACE print_flows {'{#1}': 'lake'} + +block options +name save_flows +type keyword +reader urword +optional true +longname save lake flows to budget file +description REPLACE save_flows {'{#1}': 'lake'} + +block options +name budget_filerecord +type record budget fileout budgetfile +shape +reader urword +tagged true +optional true +longname +description + +block options +name budget +type keyword +shape +in_record true +reader urword +tagged true +optional false +longname budget keyword +description keyword to specify that record corresponds to the budget. + +block options +name fileout +type keyword +shape +in_record true +reader urword +tagged true +optional false +longname file keyword +description keyword to specify that an output filename is expected next. + +block options +name budgetfile +type string +preserve_case true +shape +in_record true +reader urword +tagged false +optional false +longname file keyword +description name of the binary output file to write budget information. + +block options +name budgetcsv_filerecord +type record budgetcsv fileout budgetcsvfile +shape +reader urword +tagged true +optional true +longname +description + +block options +name budgetcsv +type keyword +shape +in_record true +reader urword +tagged true +optional false +longname budget keyword +description keyword to specify that record corresponds to the budget CSV. + +block options +name budgetcsvfile +type string +preserve_case true +shape +in_record true +reader urword +tagged false +optional false +longname file keyword +description name of the comma-separated value (CSV) output file to write budget summary information. A budget summary record will be written to this file for each time step of the simulation. + + diff --git a/flopy/mf6/data/dfn/gwe-mwe.dfn b/flopy/mf6/data/dfn/gwe-mwe.dfn new file mode 100644 index 000000000..c805b6533 --- /dev/null +++ b/flopy/mf6/data/dfn/gwe-mwe.dfn @@ -0,0 +1,447 @@ +# --------------------- gwe mwe options --------------------- +# flopy multi-package + +block options +name flow_package_name +type string +shape +reader urword +optional true +longname keyword to specify name of corresponding flow package +description keyword to specify the name of the corresponding flow package. If not specified, then the corresponding flow package must have the same name as this advanced transport package (the name associated with this package in the GWE name file). + +block options +name auxiliary +type string +shape (naux) +reader urword +optional true +longname keyword to specify aux variables +description REPLACE auxnames {'{#1}': 'Groundwater Energy Transport'} + +block options +name flow_package_auxiliary_name +type string +shape +reader urword +optional true +longname keyword to specify name of temperature auxiliary variable in flow package +description keyword to specify the name of an auxiliary variable in the corresponding flow package. If specified, then the simulated temperatures from this advanced transport package will be copied into the auxiliary variable specified with this name. Note that the flow package must have an auxiliary variable with this name or the program will terminate with an error. If the flows for this advanced transport package are read from a file, then this option will have no effect. + +block options +name boundnames +type keyword +shape +reader urword +optional true +longname +description REPLACE boundnames {'{#1}': 'well'} + +block options +name print_input +type keyword +reader urword +optional true +longname print input to listing file +description REPLACE print_input {'{#1}': 'well'} + +block options +name print_temperature +type keyword +reader urword +optional true +longname print calculated temperatures to listing file +description REPLACE print_temperature {'{#1}': 'well', '{#2}': 'temperature', '{#3}': 'TEMPERATURE'} + +block options +name print_flows +type keyword +reader urword +optional true +longname print calculated flows to listing file +description REPLACE print_flows {'{#1}': 'well'} + +block options +name save_flows +type keyword +reader urword +optional true +longname save well flows to budget file +description REPLACE save_flows {'{#1}': 'well'} + +block options +name temperature_filerecord +type record temperature fileout tempfile +shape +reader urword +tagged true +optional true +longname +description + +block options +name temperature +type keyword +shape +in_record true +reader urword +tagged true +optional false +longname stage keyword +description keyword to specify that record corresponds to temperature. + +block options +name tempfile +type string +preserve_case true +shape +in_record true +reader urword +tagged false +optional false +longname file keyword +description name of the binary output file to write temperature information. + +block options +name budget_filerecord +type record budget fileout budgetfile +shape +reader urword +tagged true +optional true +longname +description + +block options +name budget +type keyword +shape +in_record true +reader urword +tagged true +optional false +longname budget keyword +description keyword to specify that record corresponds to the budget. + +block options +name fileout +type keyword +shape +in_record true +reader urword +tagged true +optional false +longname file keyword +description keyword to specify that an output filename is expected next. + +block options +name budgetfile +type string +preserve_case true +shape +in_record true +reader urword +tagged false +optional false +longname file keyword +description name of the binary output file to write budget information. + +block options +name budgetcsv_filerecord +type record budgetcsv fileout budgetcsvfile +shape +reader urword +tagged true +optional true +longname +description + +block options +name budgetcsv +type keyword +shape +in_record true +reader urword +tagged true +optional false +longname budget keyword +description keyword to specify that record corresponds to the budget CSV. + +block options +name budgetcsvfile +type string +preserve_case true +shape +in_record true +reader urword +tagged false +optional false +longname file keyword +description name of the comma-separated value (CSV) output file to write budget summary information. A budget summary record will be written to this file for each time step of the simulation. + +block options +name ts_filerecord +type record ts6 filein ts6_filename +shape +reader urword +tagged true +optional true +longname +description + +block options +name ts6 +type keyword +shape +in_record true +reader urword +tagged true +optional false +longname head keyword +description keyword to specify that record corresponds to a time-series file. + +block options +name filein +type keyword +shape +in_record true +reader urword +tagged true +optional false +longname file keyword +description keyword to specify that an input filename is expected next. + +block options +name ts6_filename +type string +preserve_case true +in_record true +reader urword +optional false +tagged false +longname file name of time series information +description REPLACE timeseriesfile {} + +block options +name obs_filerecord +type record obs6 filein obs6_filename +shape +reader urword +tagged true +optional true +longname +description + +block options +name obs6 +type keyword +shape +in_record true +reader urword +tagged true +optional false +longname obs keyword +description keyword to specify that record corresponds to an observations file. + +block options +name obs6_filename +type string +preserve_case true +in_record true +tagged false +reader urword +optional false +longname obs6 input filename +description REPLACE obs6_filename {'{#1}': 'MWE'} + + +# --------------------- gwe mwe packagedata --------------------- + +block packagedata +name packagedata +type recarray mawno strt ktf fthk aux boundname +shape (maxbound) +reader urword +longname +description + +block packagedata +name mawno +type integer +shape +tagged false +in_record true +reader urword +longname well number for this entry +description integer value that defines the well number associated with the specified PACKAGEDATA data on the line. MAWNO must be greater than zero and less than or equal to NMAWWELLS. Well information must be specified for every well or the program will terminate with an error. The program will also terminate with an error if information for a well is specified more than once. +numeric_index true + +block packagedata +name strt +type double precision +shape +tagged false +in_record true +reader urword +longname starting well temperature +description real value that defines the starting temperature for the well. + +block packagedata +name ktf +type double precision +shape +tagged false +in_record true +reader urword +longname thermal conductivity of the feature +description is the thermal conductivity of the of the interface between the aquifer cell and the feature. + +block packagedata +name fthk +type double precision +shape +tagged false +in_record true +reader urword +longname thickness of the well feature +description real value that defines the thickness of the material through which conduction occurs. Must be greater than 0. + +block packagedata +name aux +type double precision +in_record true +tagged false +shape (naux) +reader urword +time_series true +optional true +longname auxiliary variables +description REPLACE aux {'{#1}': 'well'} + +block packagedata +name boundname +type string +shape +tagged false +in_record true +reader urword +optional true +longname well name +description REPLACE boundname {'{#1}': 'well'} + + +# --------------------- gwe mwe period --------------------- + +block period +name iper +type integer +block_variable True +in_record true +tagged false +shape +valid +reader urword +optional false +longname stress period number +description REPLACE iper {} + +block period +name mweperioddata +type recarray mawno mwesetting +shape +reader urword +longname +description + +block period +name mawno +type integer +shape +tagged false +in_record true +reader urword +longname well number for this entry +description integer value that defines the well number associated with the specified PERIOD data on the line. MAWNO must be greater than zero and less than or equal to NMAWWELLS. +numeric_index true + +block period +name mwesetting +type keystring status temperature rate auxiliaryrecord +shape +tagged false +in_record true +reader urword +longname +description line of information that is parsed into a keyword and values. Keyword values that can be used to start the MWESETTING string include: STATUS, TEMPERATURE, RAINFALL, EVAPORATION, RUNOFF, and AUXILIARY. These settings are used to assign the temperature of associated with the corresponding flow terms. Temperatures cannot be specified for all flow terms. For example, the Multi-Aquifer Well Package supports a ``WITHDRAWAL'' flow term. If this withdrawal term is active, then water will be withdrawn from the well at the calculated temperature of the well. + +block period +name status +type string +shape +tagged true +in_record true +reader urword +longname well temperature status +description keyword option to define well status. STATUS can be ACTIVE, INACTIVE, or CONSTANT. By default, STATUS is ACTIVE, which means that temperature will be calculated for the well. If a well is inactive, then there will be no solute mass fluxes into or out of the well and the inactive value will be written for the well temperature. If a well is constant, then the temperature for the well will be fixed at the user specified value. + +block period +name temperature +type string +shape +tagged true +in_record true +time_series true +reader urword +longname well temperature +description real or character value that defines the temperature for the well. The specified TEMPERATURE is only applied if the well is a constant temperature well. If the Options block includes a TIMESERIESFILE entry (see the ``Time-Variable Input'' section), values can be obtained from a time series by entering the time-series name in place of a numeric value. + +block period +name rate +type string +shape +tagged true +in_record true +reader urword +time_series true +longname well injection temperature +description real or character value that defines the injection solute temperature $^{\circ}C$ for the well. If the Options block includes a TIMESERIESFILE entry (see the ``Time-Variable Input'' section), values can be obtained from a time series by entering the time-series name in place of a numeric value. + +block period +name auxiliaryrecord +type record auxiliary auxname auxval +shape +tagged +in_record true +reader urword +longname +description + +block period +name auxiliary +type keyword +shape +in_record true +reader urword +longname +description keyword for specifying auxiliary variable. + +block period +name auxname +type string +shape +tagged false +in_record true +reader urword +longname +description name for the auxiliary variable to be assigned AUXVAL. AUXNAME must match one of the auxiliary variable names defined in the OPTIONS block. If AUXNAME does not match one of the auxiliary variable names defined in the OPTIONS block the data are ignored. + +block period +name auxval +type double precision +shape +tagged false +in_record true +reader urword +time_series true +longname auxiliary variable value +description value for the auxiliary variable. If the Options block includes a TIMESERIESFILE entry (see the ``Time-Variable Input'' section), values can be obtained from a time series by entering the time-series name in place of a numeric value. diff --git a/flopy/mf6/data/dfn/gwe-nam.dfn b/flopy/mf6/data/dfn/gwe-nam.dfn new file mode 100644 index 000000000..31aa8fd84 --- /dev/null +++ b/flopy/mf6/data/dfn/gwe-nam.dfn @@ -0,0 +1,74 @@ +# --------------------- gwe nam options --------------------- + +block options +name list +type string +reader urword +optional true +preserve_case true +longname name of listing file +description is name of the listing file to create for this GWE model. If not specified, then the name of the list file will be the basename of the GWE model name file and the ``.lst'' extension. For example, if the GWE name file is called ``my.model.nam'' then the list file will be called ``my.model.lst''. + +block options +name print_input +type keyword +reader urword +optional true +longname print input to listing file +description REPLACE print_input {'{#1}': 'all model stress package'} + +block options +name print_flows +type keyword +reader urword +optional true +longname print calculated flows to listing file +description REPLACE print_flows {'{#1}': 'all model package'} + +block options +name save_flows +type keyword +reader urword +optional true +longname save flows for all packages to budget file +description REPLACE save_flows {'{#1}': 'all model package'} + +# --------------------- gwe nam packages --------------------- + +block packages +name packages +type recarray ftype fname pname +reader urword +optional false +longname package list +description + +block packages +name ftype +in_record true +type string +tagged false +reader urword +longname package type +description is the file type, which must be one of the following character values shown in table~\ref{table:ftype-gwe}. Ftype may be entered in any combination of uppercase and lowercase. + +block packages +name fname +in_record true +type string +preserve_case true +tagged false +reader urword +longname file name +description is the name of the file containing the package input. The path to the file should be included if the file is not located in the folder where the program was run. + +block packages +name pname +in_record true +type string +tagged false +reader urword +optional true +longname user name for package +description is the user-defined name for the package. PNAME is restricted to 16 characters. No spaces are allowed in PNAME. PNAME character values are read and stored by the program for stress packages only. These names may be useful for labeling purposes when multiple stress packages of the same type are located within a single GWE Model. If PNAME is specified for a stress package, then PNAME will be used in the flow budget table in the listing file; it will also be used for the text entry in the cell-by-cell budget file. PNAME is case insensitive and is stored in all upper case letters. + diff --git a/flopy/mf6/data/dfn/gwe-oc.dfn b/flopy/mf6/data/dfn/gwe-oc.dfn new file mode 100644 index 000000000..74020a36b --- /dev/null +++ b/flopy/mf6/data/dfn/gwe-oc.dfn @@ -0,0 +1,313 @@ +# --------------------- gwe oc options --------------------- + +block options +name budget_filerecord +type record budget fileout budgetfile +shape +reader urword +tagged true +optional true +longname +description + +block options +name budget +type keyword +shape +in_record true +reader urword +tagged true +optional false +longname budget keyword +description keyword to specify that record corresponds to the budget. + +block options +name fileout +type keyword +shape +in_record true +reader urword +tagged true +optional false +longname file keyword +description keyword to specify that an output filename is expected next. + +block options +name budgetfile +type string +preserve_case true +shape +in_record true +reader urword +tagged false +optional false +longname file keyword +description name of the output file to write budget information. + +block options +name budgetcsv_filerecord +type record budgetcsv fileout budgetcsvfile +shape +reader urword +tagged true +optional true +longname +description + +block options +name budgetcsv +type keyword +shape +in_record true +reader urword +tagged true +optional false +longname budget keyword +description keyword to specify that record corresponds to the budget CSV. + +block options +name budgetcsvfile +type string +preserve_case true +shape +in_record true +reader urword +tagged false +optional false +longname file keyword +description name of the comma-separated value (CSV) output file to write budget summary information. A budget summary record will be written to this file for each time step of the simulation. + +block options +name temperature_filerecord +type record temperature fileout temperaturefile +shape +reader urword +tagged true +optional true +longname +description + +block options +name temperature +type keyword +shape +in_record true +reader urword +tagged true +optional false +longname temperature keyword +description keyword to specify that record corresponds to temperature. + +block options +name temperaturefile +type string +preserve_case true +shape +in_record true +reader urword +tagged false +optional false +longname file keyword +description name of the output file to write temperature information. + +block options +name temperatureprintrecord +type record temperature print_format formatrecord +shape +reader urword +optional true +longname +description + +block options +name print_format +type keyword +shape +in_record true +reader urword +tagged true +optional false +longname keyword to indicate that a print format follows +description keyword to specify format for printing to the listing file. + +block options +name formatrecord +type record columns width digits format +shape +in_record true +reader urword +tagged +optional false +longname +description + +block options +name columns +type integer +shape +in_record true +reader urword +tagged true +optional +longname number of columns +description number of columns for writing data. + +block options +name width +type integer +shape +in_record true +reader urword +tagged true +optional +longname width for each number +description width for writing each number. + +block options +name digits +type integer +shape +in_record true +reader urword +tagged true +optional +longname number of digits +description number of digits to use for writing a number. + +block options +name format +type string +shape +in_record true +reader urword +tagged false +optional false +longname write format +description write format can be EXPONENTIAL, FIXED, GENERAL, or SCIENTIFIC. + + +# --------------------- gwe oc period --------------------- + +block period +name iper +type integer +block_variable True +in_record true +tagged false +shape +valid +reader urword +optional false +longname stress period number +description REPLACE iper {} + +block period +name saverecord +type record save rtype ocsetting +shape +reader urword +tagged false +optional true +longname +description + +block period +name save +type keyword +shape +in_record true +reader urword +tagged true +optional false +longname keyword to save +description keyword to indicate that information will be saved this stress period. + +block period +name printrecord +type record print rtype ocsetting +shape +reader urword +tagged false +optional true +longname +description + +block period +name print +type keyword +shape +in_record true +reader urword +tagged true +optional false +longname keyword to save +description keyword to indicate that information will be printed this stress period. + +block period +name rtype +type string +shape +in_record true +reader urword +tagged false +optional false +longname record type +description type of information to save or print. Can be BUDGET or TEMPERATURE. + +block period +name ocsetting +type keystring all first last frequency steps +shape +tagged false +in_record true +reader urword +longname +description specifies the steps for which the data will be saved. + +block period +name all +type keyword +shape +in_record true +reader urword +longname +description keyword to indicate save for all time steps in period. + +block period +name first +type keyword +shape +in_record true +reader urword +longname +description keyword to indicate save for first step in period. This keyword may be used in conjunction with other keywords to print or save results for multiple time steps. + +block period +name last +type keyword +shape +in_record true +reader urword +longname +description keyword to indicate save for last step in period. This keyword may be used in conjunction with other keywords to print or save results for multiple time steps. + +block period +name frequency +type integer +shape +tagged true +in_record true +reader urword +longname +description save at the specified time step frequency. This keyword may be used in conjunction with other keywords to print or save results for multiple time steps. + +block period +name steps +type integer +shape (= VerbosityLevel.verbose.value ): print( - "Storing {} layer {} to external file {}.." - ".".format( + "Storing {} layer {} to external file {}.." ".".format( self.structure.name, current_layer[0] + 1, file_path, @@ -634,8 +635,7 @@ def store_internal( >= VerbosityLevel.verbose.value ): print( - "Storing {} layer {} internally.." - ".".format( + "Storing {} layer {} internally.." ".".format( self.structure.name, current_layer[0] + 1, ) @@ -852,7 +852,7 @@ def _set_record(self, data_record): self._set_data(record, layer=layer, preserve_record=False) else: self._set_data(data_record, preserve_record=False) - elif type(data_record) == list: + elif isinstance(data_record, list): for layer, record in enumerate(data_record): self._set_data(record, layer=layer, preserve_record=False) else: @@ -1217,8 +1217,9 @@ def _get_file_entry( # set layer range if not shape_ml.in_shape(layer): comment = ( - 'Layer {} for variable "{}" does not exist' - ".".format(layer, self._data_name) + 'Layer {} for variable "{}" does not exist' ".".format( + layer, self._data_name + ) ) type_, value_, traceback_ = sys.exc_info() raise MFDataException( @@ -1293,7 +1294,7 @@ def _new_storage( data_path=self._path, ) - def _get_storage_obj(self): + def _get_storage_obj(self, first_record=False): return self._data_storage def _set_storage_obj(self, storage): @@ -1787,6 +1788,9 @@ def has_data(self, layer=None): self.get_data_prep(sto_key) if super().has_data(): return True + for val in self.empty_keys.values(): + if val: + return True return False else: self.get_data_prep(layer) @@ -1917,7 +1921,11 @@ def _set_data_record( if list_item is None: self.remove_transient_key(key) del_keys.append(key) + self.empty_keys[key] = False + elif isinstance(list_item, list) and len(list_item) == 0: + self.empty_keys[key] = True else: + self.empty_keys[key] = False self._set_data_prep(list_item, key) if is_record: super().set_record(list_item) @@ -1939,7 +1947,11 @@ def _set_data_record( key = 0 if data is None: self.remove_transient_key(key) + elif isinstance(data, list) and len(data) == 0: + # add empty record + self.empty_keys[key] = True else: + self.empty_keys[key] = False self._set_data_prep(data, key) super().set_data(data, multiplier, layer) @@ -1961,6 +1973,8 @@ def get_file_entry( """ + if key in self.empty_keys and self.empty_keys[key]: + return "" self._get_file_entry_prep(key) return super().get_file_entry(ext_file_action=ext_file_action) @@ -2020,7 +2034,11 @@ def _new_storage( def _set_storage_obj(self, storage): self._data_storage[self._current_key] = storage - def _get_storage_obj(self): + def _get_storage_obj(self, first_record=False): + if first_record and isinstance(self._data_storage, dict): + for value in self._data_storage.values(): + return value + return None if ( self._current_key is None or self._current_key not in self._data_storage diff --git a/flopy/mf6/data/mfdatalist.py b/flopy/mf6/data/mfdatalist.py index d1e4e123b..f35147206 100644 --- a/flopy/mf6/data/mfdatalist.py +++ b/flopy/mf6/data/mfdatalist.py @@ -133,7 +133,7 @@ def to_array(self, kper=0, mask=False): MODFLOW zero-based stress period number to return. (default is zero) mask : bool - return array with np.NaN instead of zero + return array with np.nan instead of zero Returns ---------- @@ -221,8 +221,9 @@ def store_as_external_file( >= VerbosityLevel.verbose.value ): print( - "Storing {} to external file {}.." - ".".format(self.structure.name, external_file_path) + "Storing {} to external file {}.." ".".format( + self.structure.name, external_file_path + ) ) external_data = { "filename": external_file_path, @@ -712,7 +713,7 @@ def search_data(self, search_term, col=None): if ( val is not None and val.lower() == search_term - and (col == None or col == col_num) + and (col is None or col == col_num) ): return (row, col) col_num += 1 @@ -977,7 +978,7 @@ def _get_file_entry_record( ): data_complete_len = len(data_line) if data_complete_len <= index: - if data_item.optional == False: + if data_item.optional is False: message = ( "Not enough data provided " "for {}. Data for required data " @@ -1391,7 +1392,7 @@ def _new_storage(self, stress_period=0): data_path=self._path, ) - def _get_storage_obj(self): + def _get_storage_obj(self, first_record=False): return self._data_storage def plot( @@ -1744,6 +1745,9 @@ def has_data(self, key=None): self.get_data_prep(sto_key) if super().has_data(): return True + for val in self.empty_keys.values(): + if val: + return True return False else: self.get_data_prep(key) @@ -2046,7 +2050,11 @@ def update_record(self, record, key_index, key=0): def _new_storage(self, stress_period=0): return {} - def _get_storage_obj(self): + def _get_storage_obj(self, first_record=False): + if first_record and isinstance(self._data_storage, dict): + for value in self._data_storage.values(): + return value + return None if ( self._current_key is None or self._current_key not in self._data_storage diff --git a/flopy/mf6/data/mfdataplist.py b/flopy/mf6/data/mfdataplist.py index 95460bf28..dd397699d 100644 --- a/flopy/mf6/data/mfdataplist.py +++ b/flopy/mf6/data/mfdataplist.py @@ -67,6 +67,55 @@ def __init__(self): self.data_storage_type = None self.modified = False + def __repr__(self): + return self.get_data_str(True) + + def __str__(self): + return self.get_data_str(False) + + def _get_header_str(self): + header_list = [] + if self.data_storage_type == DataStorageType.external_file: + header_list.append(f"open/close {self.fname}") + else: + header_list.append("internal") + if self.iprn is not None: + header_list.append(f"iprn {self.iprn}") + if len(header_list) > 0: + return ", ".join(header_list) + else: + return "" + + def get_data_str(self, formal): + data_str = "" + layer_str = "" + if self.data_storage_type == DataStorageType.internal_array: + if self.internal_data is not None: + header = self._get_header_str() + if formal: + data_str = "{}{}{{{}}}\n({})\n".format( + data_str, + layer_str, + header, + repr(self.internal_data), + ) + else: + data_str = "{}{}{{{}}}\n({})\n".format( + data_str, + layer_str, + header, + str(self.internal_data), + ) + elif self.data_storage_type == DataStorageType.external_file: + header = self._get_header_str() + data_str = "{}{}{{{}}}\n({})\n".format( + data_str, + layer_str, + header, + "External data not displayed", + ) + return data_str + def get_record(self): rec = {} if self.internal_data is not None: @@ -726,7 +775,7 @@ def set_data(self, data, autofill=False, check_data=True, append=False): self._simulation_data.debug, ) - data_storage = self._get_storage() + data_storage = self._get_storage_obj() if append: # append data to existing dataframe current_data = self._get_dataframe() @@ -742,7 +791,7 @@ def set_data(self, data, autofill=False, check_data=True, append=False): def has_modified_ext_data(self): """check to see if external data has been modified since last read""" - data_storage = self._get_storage() + data_storage = self._get_storage_obj() return ( data_storage.data_storage_type == DataStorageType.external_file and data_storage.internal_data is not None @@ -750,7 +799,7 @@ def has_modified_ext_data(self): def binary_ext_data(self): """check for binary data""" - data_storage = self._get_storage() + data_storage = self._get_storage_obj() return data_storage.binary def to_array(self, kper=0, mask=False): @@ -763,7 +812,7 @@ def to_array(self, kper=0, mask=False): MODFLOW zero-based stress period number to return (default is zero) mask : bool - return array with np.NaN instead of zero + return array with np.nan instead of zero Returns ---------- @@ -792,7 +841,7 @@ def set_record(self, record, autofill=False, check_data=True): """ if isinstance(record, dict): - data_storage = self._get_storage() + data_storage = self._get_storage_obj() if "filename" in record: data_storage.set_external(record["filename"]) if "binary" in record: @@ -851,9 +900,9 @@ def append_data(self, data): """ try: self._resync() - if self._get_storage() is None: + if self._get_storage_obj() is None: self._data_storage = self._new_storage() - data_storage = self._get_storage() + data_storage = self._get_storage_obj() if ( data_storage.data_storage_type == DataStorageType.internal_array @@ -952,7 +1001,7 @@ def store_internal( Verify data prior to storing """ - storage = self._get_storage() + storage = self._get_storage_obj() # check if data is already stored external if ( storage is None @@ -999,7 +1048,7 @@ def store_as_external_file( """ # only store data externally (do not subpackage info) if self.structure.construct_package is None: - storage = self._get_storage() + storage = self._get_storage_obj() # check if data is already stored external if ( replace_existing_external @@ -1016,8 +1065,9 @@ def store_as_external_file( >= VerbosityLevel.verbose.value ): print( - "Storing {} to external file {}.." - ".".format(self.structure.name, external_file_path) + "Storing {} to external file {}.." ".".format( + self.structure.name, external_file_path + ) ) external_data = { "filename": external_file_path, @@ -1030,7 +1080,7 @@ def store_as_external_file( def external_file_name(self): """Returns external file name, or None if this is not external data.""" - storage = self._get_storage() + storage = self._get_storage_obj() if storage is None: return None if ( @@ -1191,15 +1241,15 @@ def _save_binary_data(self, fd_data_file, data): fd_data_file, self._model_or_sim.modeldiscrit, ) - data_storage = self._get_storage() + data_storage = self._get_storage_obj() data_storage.internal_data = None def has_data(self, key=None): """Returns whether this MFList has any data associated with it.""" try: - if self._get_storage() is None: + if self._get_storage_obj() is None: return False - return self._get_storage().has_data() + return self._get_storage_obj().has_data() except Exception as ex: type_, value_, traceback_ = sys.exc_info() raise MFDataException( @@ -1281,7 +1331,7 @@ def load( next data line : str """ - data_storage = self._get_storage() + data_storage = self._get_storage_obj() data_storage.modified = False # parse first line to determine if this is internal or external data datautil.PyListUtil.reset_delimiter_used() @@ -1338,7 +1388,7 @@ def load( def _new_storage(self): return {"Data": PandasListStorage()} - def _get_storage(self): + def _get_storage_obj(self, first_record=False): return self._data_storage["Data"] def _get_id_fields(self, data_frame): @@ -1484,7 +1534,7 @@ def _get_data(self): def _get_dataframe(self): """get and return dataframe for this list data""" - data_storage = self._get_storage() + data_storage = self._get_storage_obj() if data_storage is None or data_storage.data_storage_type is None: block_exists = self._block.header_exists( self._current_key, self.path @@ -1551,9 +1601,9 @@ def _get_record(self, data_frame=False): """ try: - if self._get_storage() is None: + if self._get_storage_obj() is None: return None - record = self._get_storage().get_record() + record = self._get_storage_obj().get_record() except Exception as ex: type_, value_, traceback_ = sys.exc_info() raise MFDataException( @@ -1650,7 +1700,7 @@ def _write_file_entry( ------- result of pandas to_csv call """ - data_storage = self._get_storage() + data_storage = self._get_storage_obj() if data_storage is None: return "" if ( @@ -1751,7 +1801,7 @@ def _get_file_path(self): file_path : file path to data """ - data_storage = self._get_storage() + data_storage = self._get_storage_obj() if data_storage.fname is None: return None if self._model_or_sim.type == "model": @@ -1989,11 +2039,11 @@ def store_as_external_file( self._cache_model_grid = True for sp in self._data_storage.keys(): self._current_key = sp - storage = self._get_storage() + storage = self._get_storage_obj() if storage.internal_size == 0: storage.internal_data = self.get_dataframe(sp) if storage.internal_size > 0 and ( - self._get_storage().data_storage_type + self._get_storage_obj().data_storage_type != DataStorageType.external_file or replace_existing_external ): @@ -2027,7 +2077,7 @@ def store_internal( for sp in self._data_storage.keys(): self._current_key = sp if ( - self._get_storage().data_storage_type + self._get_storage_obj().data_storage_type == DataStorageType.external_file ): super().store_internal( @@ -2482,7 +2532,11 @@ def update_record(self, record, key_index, key=0): def _new_storage(self): return {} - def _get_storage(self): + def _get_storage_obj(self, first_record=False): + if first_record and isinstance(self._data_storage, dict): + for value in self._data_storage.values(): + return value + return None if ( self._current_key is None or self._current_key not in self._data_storage diff --git a/flopy/mf6/data/mfdatascalar.py b/flopy/mf6/data/mfdatascalar.py index ca6e7e63a..8eb482428 100644 --- a/flopy/mf6/data/mfdatascalar.py +++ b/flopy/mf6/data/mfdatascalar.py @@ -299,8 +299,7 @@ def add_one(self): ) else: message = ( - "{} of type {} does not support add one " - "operation.".format( + "{} of type {} does not support add one " "operation.".format( self._data_name, self.structure.get_datum_type() ) ) @@ -385,7 +384,7 @@ def get_file_entry( ex, ) if self.structure.type == DatumType.keyword: - if data is not None and data != False: + if data is not None and data is not False: # keyword appears alone return "{}{}\n".format( self._simulation_data.indent_string, @@ -408,7 +407,8 @@ def get_file_entry( ): data = data[0] if len(data) > index and ( - data[index] is not None and data[index] != False + data[index] is not None + and data[index] is not False ): text_line.append(data_item.name.upper()) if ( @@ -421,7 +421,7 @@ def get_file_entry( # assume the keyword was excluded index -= 1 else: - if data is not None and data != False: + if data is not None and data is not False: text_line.append(data_item.name.upper()) else: if data is not None and data != "": @@ -429,12 +429,12 @@ def get_file_entry( if len(data) > index: if ( data[index] is not None - and data[index] != False + and data[index] is not False ): current_data = data[index] else: break - elif data_item.optional == True: + elif data_item.optional is True: break else: message = ( @@ -462,7 +462,7 @@ def get_file_entry( if data_item.type == DatumType.keyword: if ( current_data is not None - and current_data != False + and current_data is not False ): if ( isinstance(data[index], str) @@ -661,7 +661,7 @@ def _new_storage(self, stress_period=0): data_path=self._path, ) - def _get_storage_obj(self): + def _get_storage_obj(self, first_record=False): return self._data_storage def plot(self, filename_base=None, file_extension=None, **kwargs): @@ -911,7 +911,11 @@ def load( def _new_storage(self, stress_period=0): return {} - def _get_storage_obj(self): + def _get_storage_obj(self, first_record=False): + if first_record and isinstance(self._data_storage, dict): + for value in self._data_storage.values(): + return value + return None if ( self._current_key is None or self._current_key not in self._data_storage diff --git a/flopy/mf6/data/mfdatastorage.py b/flopy/mf6/data/mfdatastorage.py index 4285b908e..86fc50e24 100644 --- a/flopy/mf6/data/mfdatastorage.py +++ b/flopy/mf6/data/mfdatastorage.py @@ -497,6 +497,22 @@ def get_data_str(self, formal): layer_str, self._get_layer_header_str(index), ) + elif storage.data_storage_type == DataStorageType.external_file: + header = self._get_layer_header_str(index) + if self.layered: + data_str = "{}{}{{{}}}\n({})\n".format( + data_str, + layer_str, + header, + "External data not displayed", + ) + else: + data_str = "{}{}{{{}}}\n({})\n".format( + data_str, + layer_str, + header, + "External data not displayed", + ) return data_str def _get_layer_header_str(self, layer): @@ -1372,16 +1388,16 @@ def store_internal( # convert numbers to be multiplied by the original factor data = data * adjustment if const: - self.layer_storage[layer].data_storage_type = ( - DataStorageType.internal_constant - ) + self.layer_storage[ + layer + ].data_storage_type = DataStorageType.internal_constant self.layer_storage[layer].data_const_value = [ mfdatautil.get_first_val(data) ] else: - self.layer_storage[layer].data_storage_type = ( - DataStorageType.internal_array - ) + self.layer_storage[ + layer + ].data_storage_type = DataStorageType.internal_array try: self.layer_storage[layer].internal_data = np.reshape( data, dimensions @@ -1410,11 +1426,11 @@ def store_internal( data_type = self.data_dimensions.structure.get_datum_type(True) dt = self.layer_storage[layer].internal_data.dtype if dt != data_type: - self.layer_storage[layer].internal_data = ( - self.layer_storage[layer].internal_data.astype( - data_type - ) - ) + self.layer_storage[ + layer + ].internal_data = self.layer_storage[ + layer + ].internal_data.astype(data_type) if not preserve_record: self.layer_storage[layer].factor = multiplier self.layer_storage[layer].iprn = print_format @@ -1802,9 +1818,9 @@ def store_external( if self._calc_data_size(data, 2) == 1 and data_size > 1: # constant data, need to expand self.layer_storage[layer_new].data_const_value = data - self.layer_storage[layer_new].data_storage_type = ( - DataStorageType.internal_constant - ) + self.layer_storage[ + layer_new + ].data_storage_type = DataStorageType.internal_constant data = self._fill_const_layer(layer) elif isinstance(data, list): data = self._to_ndarray(data, layer) @@ -1861,9 +1877,9 @@ def set_ext_file_attributes(self, layer, file_path, print_format, binary): self.layer_storage[layer].fname = file_path self.layer_storage[layer].iprn = print_format self.layer_storage[layer].binary = binary - self.layer_storage[layer].data_storage_type = ( - DataStorageType.external_file - ) + self.layer_storage[ + layer + ].data_storage_type = DataStorageType.external_file def point_to_existing_external_file(self, arr_line, layer): ( @@ -1996,6 +2012,7 @@ def external_to_internal( self._data_type, self.get_data_dimensions(layer), layer, + self.layered, read_file, )[0] if apply_mult and self.layer_storage[layer].factor is not None: @@ -2090,8 +2107,9 @@ def resolve_shape_list( ) except Exception as se: comment = ( - 'Unable to resolve shape for data "{}" field "{}"' - ".".format(struct.name, data_item.name) + 'Unable to resolve shape for data "{}" field "{}"' ".".format( + struct.name, data_item.name + ) ) type_, value_, traceback_ = sys.exc_info() raise MFDataException( @@ -2453,6 +2471,7 @@ def _build_full_data(self, apply_multiplier=False): np_data_type, self.get_data_dimensions(layer), layer, + self.layered, read_file, )[0] * mult diff --git a/flopy/mf6/data/mfdatautil.py b/flopy/mf6/data/mfdatautil.py index bf9f57174..9a4d6cdbf 100644 --- a/flopy/mf6/data/mfdatautil.py +++ b/flopy/mf6/data/mfdatautil.py @@ -78,6 +78,7 @@ def convert_data(data, data_dimensions, data_type, data_item=None, sub_amt=1): if isinstance(data, str): # fix any scientific formatting that python can't handle data = data.replace("d", "e") + data = data.replace("D", "e") return float(data) except (ValueError, TypeError): try: @@ -151,7 +152,7 @@ def list_to_array(sarr, model_grid, kper=0, mask=False): MODFLOW zero-based stress period number to return. (default is zero) mask : bool - return array with np.NaN instead of zero + return array with np.nan instead of zero Returns ---------- @@ -192,7 +193,7 @@ def list_to_array(sarr, model_grid, kper=0, mask=False): if sarr[0] == 0: if mask: for name, arr in arrays.items(): - arrays[name][:] = np.NaN + arrays[name][:] = np.nan return arrays else: raise Exception("MfList: something bad happened") @@ -210,7 +211,7 @@ def list_to_array(sarr, model_grid, kper=0, mask=False): arr[idx] /= cnt[idx] if mask: arr = np.ma.masked_where(cnt == 0.0, arr) - arr[cnt == 0.0] = np.NaN + arr[cnt == 0.0] = np.nan arrays[name] = arr.copy() return arrays @@ -965,7 +966,7 @@ def dtype( "Data dimensions can not be determined for " "{}. Data structure may be jagged or may contain " "a keystring. Data type information is therefore " - "dependant on the data and can not be retreived " + "dependent on the data and can not be retrieved " "prior to the data being loaded" ".".format(data_storage.data_dimensions.structure.name) ) diff --git a/flopy/mf6/data/mffileaccess.py b/flopy/mf6/data/mffileaccess.py index a68a78a07..73f19f92b 100644 --- a/flopy/mf6/data/mffileaccess.py +++ b/flopy/mf6/data/mffileaccess.py @@ -577,10 +577,17 @@ def read_text_data_from_file( data_type, data_dim, layer, + layered, fname=None, fd=None, - data_item=None, ): + # determine line size + line_size = None + if layered: + # if the array is layered (meaning a control record for + # each layer), then limit line size to number of columns + if isinstance(data_dim, list): + line_size = data_dim[-1] # load variable data from file current_size = 0 if layer is None: @@ -601,6 +608,8 @@ def read_text_data_from_file( if line == "" or arr_line[0].upper() == "END": break if not MFComment.is_comment(arr_line, True): + if line_size is not None: + arr_line = arr_line[:line_size] data_raw += arr_line else: PyListUtil.reset_delimiter_used() @@ -609,6 +618,8 @@ def read_text_data_from_file( line = fd.readline() arr_line = PyListUtil.split_data_line(line, True) if not MFComment.is_comment(arr_line, True): + if line_size is not None: + arr_line = arr_line[:line_size] data_raw += arr_line else: PyListUtil.reset_delimiter_used() @@ -886,6 +897,7 @@ def _load_layer( data_type, storage.get_data_dimensions(layer), layer, + storage.layered, fd=file_handle, ) except Exception as ex: @@ -1469,9 +1481,7 @@ def read_list_data_from_file( current_key, self._data_line, False, - )[ - 0:2 - ] + )[0:2] elif ( data_item.name == "boundname" and self._data_dimensions.package_dim.boundnames() @@ -1720,9 +1730,7 @@ def load_list_line( for ( key, record, - ) in ( - data_item.keystring_dict.items() - ): + ) in data_item.keystring_dict.items(): if ( isinstance( record, @@ -2050,9 +2058,7 @@ def _process_aux( current_key, data_line, add_to_last_line, - )[ - 0:3 - ] + )[0:3] else: # read in aux variables ( @@ -2070,9 +2076,7 @@ def _process_aux( current_key, data_line, add_to_last_line, - )[ - 0:3 - ] + )[0:3] return data_index, data_line, more_data_expected def _append_data_list( @@ -2323,7 +2327,7 @@ def load_from_package( if ( len(arr_line) <= index + 1 or data_item_type[0] != DatumType.keyword - or (index > 0 and optional == True) + or (index > 0 and optional is True) ): break index += 1 diff --git a/flopy/mf6/data/mfstructure.py b/flopy/mf6/data/mfstructure.py index 576cb2148..f45625ed5 100644 --- a/flopy/mf6/data/mfstructure.py +++ b/flopy/mf6/data/mfstructure.py @@ -81,7 +81,6 @@ def get_file_list(self): "gwf-dis", # dfn completed tex updated "gwf-disv", # dfn completed tex updated "gwf-disu", # dfn completed tex updated - "lnf-disl", # dfn completed tex updated "gwf-ic", # dfn completed tex updated "gwf-npf", # dfn completed tex updated "gwf-sto", # dfn completed tex updated @@ -1176,11 +1175,11 @@ def indicates_file_name(self): def is_file_name(self): if ( self.name.lower() in self.file_name_keywords - and self.file_name_keywords[self.name.lower()] == True + and self.file_name_keywords[self.name.lower()] is True ): return True for key, item in self.contained_keywords.items(): - if self.name.lower().find(key) != -1 and item == True: + if self.name.lower().find(key) != -1 and item is True: return True return False @@ -1557,7 +1556,7 @@ def add_item(self, item, record=False, dfn_list=None): item.type != DatumType.record and item.type != DatumType.repeating_record ) - or record == True + or record is True ): if item.name not in self.expected_data_items: raise StructException( @@ -2071,7 +2070,7 @@ def get_all_recarrays(self): class MFInputFileStructure: """ - MODFLOW Input File Stucture class. Loads file + MODFLOW Input File Structure class. Loads file structure information for individual input file types. diff --git a/flopy/mf6/mfbase.py b/flopy/mf6/mfbase.py index 3bdc6eba5..d8ff7c1ff 100644 --- a/flopy/mf6/mfbase.py +++ b/flopy/mf6/mfbase.py @@ -1,4 +1,4 @@ -""" Base classes for Modflow 6 """ +"""Base classes for Modflow 6""" import copy import inspect @@ -566,7 +566,8 @@ def _add_package(self, package, path): self.package_type_dict[package.package_type.lower()].append(package) def _remove_package(self, package): - self._packagelist.remove(package) + if package in self._packagelist: + self._packagelist.remove(package) if ( package.package_name is not None and package.package_name.lower() in self.package_name_dict @@ -577,10 +578,12 @@ def _remove_package(self, package): and package.filename.lower() in self.package_filename_dict ): del self.package_filename_dict[package.filename.lower()] - package_list = self.package_type_dict[package.package_type.lower()] - package_list.remove(package) - if len(package_list) == 0: - del self.package_type_dict[package.package_type.lower()] + if package.package_type.lower() in self.package_type_dict: + package_list = self.package_type_dict[package.package_type.lower()] + if package in package_list: + package_list.remove(package) + if len(package_list) == 0: + del self.package_type_dict[package.package_type.lower()] # collect keys of items to be removed from main dictionary items_to_remove = [] @@ -624,7 +627,7 @@ def _rename_package(self, package, new_name): ) main_dict[new_key] = main_dict.pop(key) - def get_package(self, name=None): + def get_package(self, name=None, type_only=False, name_only=False): """ Finds a package by package name, package key, package type, or partial package name. returns either a single package, a list of packages, @@ -633,7 +636,11 @@ def get_package(self, name=None): Parameters ---------- name : str - Name of the package, 'RIV', 'LPF', etc. + Name or type of the package, 'my-riv-1, 'RIV', 'LPF', etc. + type_only : bool + Search for package by type only + name_only : bool + Search for package by name only Returns ------- @@ -644,11 +651,11 @@ def get_package(self, name=None): return self._packagelist[:] # search for full package name - if name.lower() in self.package_name_dict: + if name.lower() in self.package_name_dict and not type_only: return self.package_name_dict[name.lower()] # search for package type - if name.lower() in self.package_type_dict: + if name.lower() in self.package_type_dict and not name_only: if len(self.package_type_dict[name.lower()]) == 0: return None elif len(self.package_type_dict[name.lower()]) == 1: @@ -657,18 +664,19 @@ def get_package(self, name=None): return self.package_type_dict[name.lower()] # search for file name - if name.lower() in self.package_filename_dict: + if name.lower() in self.package_filename_dict and not type_only: return self.package_filename_dict[name.lower()] # search for partial and case-insensitive package name - for pp in self._packagelist: - if pp.package_name is not None: - # get first package of the type requested - package_name = pp.package_name.lower() - if len(package_name) > len(name): - package_name = package_name[0 : len(name)] - if package_name.lower() == name.lower(): - return pp + if not type_only: + for pp in self._packagelist: + if pp.package_name is not None: + # get first package of the type requested + package_name = pp.package_name.lower() + if len(package_name) > len(name): + package_name = package_name[0 : len(name)] + if package_name.lower() == name.lower(): + return pp return None diff --git a/flopy/mf6/mfmodel.py b/flopy/mf6/mfmodel.py index 9745ec810..62945eec4 100644 --- a/flopy/mf6/mfmodel.py +++ b/flopy/mf6/mfmodel.py @@ -264,27 +264,33 @@ def modeltime(self): simulation. """ - tdis = self.simulation.get_package("tdis") + tdis = self.simulation.get_package("tdis", type_only=True) period_data = tdis.perioddata.get_data() # build steady state data - sto = self.get_package("sto") + sto = self.get_package("sto", type_only=True) if sto is None: steady = np.full((len(period_data["perlen"])), True, dtype=bool) else: steady = np.full((len(period_data["perlen"])), False, dtype=bool) ss_periods = sto.steady_state.get_active_key_dict() + for period, val in ss_periods.items(): + if val: + ss_periods[period] = sto.steady_state.get_data(period) tr_periods = sto.transient.get_active_key_dict() + for period, val in tr_periods.items(): + if val: + tr_periods[period] = sto.transient.get_data(period) if ss_periods: last_ss_value = False # loop through steady state array for index, value in enumerate(steady): # resolve if current index is steady state or transient - if index in ss_periods: + if index in ss_periods and ss_periods[index]: last_ss_value = True - elif index in tr_periods: + elif index in tr_periods and tr_periods[index]: last_ss_value = False - if last_ss_value == True: + if last_ss_value is True: steady[index] = True # build model time @@ -487,8 +493,8 @@ def modelgrid(self): iac=dis.iac.array, ja=dis.ja.array, ) - elif self.get_grid_type() == DiscretizationType.DISL: - dis = self.get_package("disl") + elif self.get_grid_type() == DiscretizationType.DISV1D: + dis = self.get_package("disv1d") if not hasattr(dis, "_init_complete"): if not hasattr(dis, "cell1d"): # disv package has not yet been initialized @@ -525,6 +531,44 @@ def modelgrid(self): yoff=self._modelgrid.yoffset, angrot=self._modelgrid.angrot, ) + elif self.get_grid_type() == DiscretizationType.DISV2D: + dis = self.get_package("disv2d") + if not hasattr(dis, "_init_complete"): + if not hasattr(dis, "cell2d"): + # disv package has not yet been initialized + return self._modelgrid + else: + # disv package has been partially initialized + self._modelgrid = VertexGrid( + vertices=dis.vertices.array, + cell2d=dis.cell2d.array, + top=None, + botm=None, + idomain=None, + lenuni=None, + crs=self._modelgrid.crs, + xoff=self._modelgrid.xoffset, + yoff=self._modelgrid.yoffset, + angrot=self._modelgrid.angrot, + ) + else: + botm = dis.botm.array + idomain = dis.idomain.array + if idomain is None: + force_resync = True + idomain = self._resolve_idomain(idomain, botm) + self._modelgrid = VertexGrid( + vertices=dis.vertices.array, + cell2d=dis.cell2d.array, + top=dis.top.array, + botm=botm, + idomain=idomain, + lenuni=dis.length_units.array, + crs=self._modelgrid.crs, + xoff=self._modelgrid.xoffset, + yoff=self._modelgrid.yoffset, + angrot=self._modelgrid.angrot, + ) else: return self._modelgrid @@ -638,10 +682,13 @@ def laycbd(self): @property def output(self): + budgetkey = None + if self.model_type == "gwt6": + budgetkey = "MASS BUDGET FOR ENTIRE MODEL" try: - return self.oc.output + return MF6Output(self.oc, budgetkey=budgetkey) except AttributeError: - return MF6Output(self) + return MF6Output(self, budgetkey=budgetkey) def export(self, f, **kwargs): """Method to export a model to a shapefile or netcdf file @@ -653,7 +700,7 @@ def export(self, f, **kwargs): or dictionary of .... **kwargs : keyword arguments modelgrid: flopy.discretization.Grid - User supplied modelgrid object which will supercede the built + User supplied modelgrid object which will supersede the built in modelgrid object if fmt is set to 'vtk', parameters of Vtk initializer @@ -787,6 +834,9 @@ def load_base( package_recarray = instance.simulation_data.mfdata[ (modelname, "nam", "packages", "packages") ] + if package_recarray.array is None: + return instance + for item in package_recarray.get_data(): if item[0] in priority_packages: packages_ordered.insert(0, (item[0], item[1], item[2])) @@ -830,7 +880,7 @@ def load_base( sim_data = simulation.simulation_data if ftype == "dis" and not sim_data.max_columns_user_set: # set column wrap to ncol - dis = instance.get_package("dis") + dis = instance.get_package("dis", type_only=True) if dis is not None and hasattr(dis, "ncol"): sim_data.max_columns_of_data = dis.ncol.get_data() sim_data.max_columns_user_set = False @@ -1036,7 +1086,7 @@ def inspect_cells( h_columns = ",".join(search_output.data_header) fd.write(f",{h_columns}\n") else: - fd.write(f",cellid,data\n") + fd.write(",cellid,data\n") # write data found for index, data_entry in enumerate( search_output.data_entries @@ -1068,7 +1118,7 @@ def inspect_cells( ) fd.write(f",{output}") fd.write(self._format_data_entry(data_entry)) - fd.write(f"\n") + fd.write("\n") return output_by_package def match_array_cells( @@ -1203,11 +1253,18 @@ def get_grid_type(self): return DiscretizationType.DISU elif ( package_recarray.search_data( - f"disl{structure.get_version_string()}", 0 + f"disv1d{structure.get_version_string()}", 0 + ) + is not None + ): + return DiscretizationType.DISV1D + elif ( + package_recarray.search_data( + f"disv2d{structure.get_version_string()}", 0 ) is not None ): - return DiscretizationType.DISL + return DiscretizationType.DISV2D return DiscretizationType.UNDEFINED @@ -1242,7 +1299,7 @@ def get_steadystate_list(self): ss_list.append(True) index += 1 - storage = self.get_package("sto") + storage = self.get_package("sto", type_only=True) if storage is not None: tr_keys = storage.transient.get_keys(True) ss_keys = storage.steady_state.get_keys(True) @@ -1278,7 +1335,7 @@ def is_valid(self): for package_struct in self.structure.package_struct_objs.values(): if ( not package_struct.optional - and not package_struct.file_type in self.package_type_dict + and package_struct.file_type not in self.package_type_dict ): return False diff --git a/flopy/mf6/mfpackage.py b/flopy/mf6/mfpackage.py index 004a8ed77..43a49e5c3 100644 --- a/flopy/mf6/mfpackage.py +++ b/flopy/mf6/mfpackage.py @@ -1031,6 +1031,13 @@ def load(self, block_header, fd, strict=True): and result[1][:3].upper() == "END" ): break + else: + # block empty, store empty array in block variables + empty_arr = [] + for ds in self.datasets.values(): + if isinstance(ds, mfdata.MFTransient): + transient_key = block_header.get_transient_key() + ds.set_data(empty_arr, key=transient_key) self.loaded = True self.is_valid() @@ -1109,7 +1116,7 @@ def _find_data_by_keyword(self, line, fd, initial_comment): elif ( arr_line[0].lower() == "readasarrays" and self.path[-1].lower() == "options" - and self._container_package.structure.read_as_arrays == False + and self._container_package.structure.read_as_arrays is False ): error_msg = ( "ERROR: Attempting to read a ReadAsArrays " @@ -1243,7 +1250,7 @@ def _add_to_info_list( def _save_comments(self, arr_line, line, key, comments): # FIX: Save these comments somewhere in the data set - if not key in self.datasets_keyword: + if key not in self.datasets_keyword: if MFComment.is_comment(key, True): if comments: comments.append("\n") @@ -1489,8 +1496,9 @@ def _write_block(self, fd, block_header, ext_file_action): >= VerbosityLevel.verbose.value ): print( - " writing data {} ({}).." - ".".format(dataset.structure.name, transient_key) + " writing data {} ({}).." ".".format( + dataset.structure.name, transient_key + ) ) if basic_list: ext_fname = dataset.external_file_name(transient_key) @@ -1583,7 +1591,7 @@ def _write_block(self, fd, block_header, ext_file_action): fd.write("\n") def is_allowed(self): - """Determine if block is valid based on the values of dependant + """Determine if block is valid based on the values of dependent MODFLOW variables.""" if self.structure.variable_dependant_path: # fill in empty part of the path with the current path @@ -2096,8 +2104,8 @@ def check(self, f=None, verbose=True, level=1, checktype=None): not datautil.DatumUtil.is_float( row[data_index] ) - and not row[data_index] - in time_series_name_dict + and row[data_index] + not in time_series_name_dict ): desc = ( f"Invalid non-numeric " @@ -2120,8 +2128,8 @@ def check(self, f=None, verbose=True, level=1, checktype=None): val = np.isnan(np.sum(data)) if val: desc = ( - f"One or more nan values were " - f"found in auxiliary data." + "One or more nan values were " + "found in auxiliary data." ) chk._add_to_summary( "Warning", @@ -2165,8 +2173,7 @@ def _get_data_str(self, formal, show_data=True): bl_repr = repr(block) if len(bl_repr.strip()) > 0: data_str = ( - "{}Block {}\n--------------------\n{}" - "\n".format( + "{}Block {}\n--------------------\n{}" "\n".format( data_str, block.structure.name, repr(block) ) ) @@ -2174,8 +2181,7 @@ def _get_data_str(self, formal, show_data=True): bl_str = str(block) if len(bl_str.strip()) > 0: data_str = ( - "{}Block {}\n--------------------\n{}" - "\n".format( + "{}Block {}\n--------------------\n{}" "\n".format( data_str, block.structure.name, str(block) ) ) @@ -2575,7 +2581,7 @@ def build_child_package(self, pkg_type, data, parameter_name, filerecord): if data is not None: package_group = getattr(self, pkg_type) # build child package file name - child_path = package_group._next_default_file_path() + child_path = package_group.next_default_file_path() # create new empty child package package_obj = self.package_factory( pkg_type, self.model_or_sim.model_type @@ -2977,7 +2983,7 @@ def _load_blocks(self, fd_input_file, strict=True, max_blocks=sys.maxsize): block_header_info, fd_input_file, strict ) - # write post block comment comment + # write post block comment self._simulation_data.mfdata[ cur_block.block_headers[-1].blk_post_comment_path ] = self.post_block_comments @@ -3381,7 +3387,7 @@ def __file_path_taken(self, possible_path): return True return False - def _next_default_file_path(self): + def next_default_file_path(self): possible_path = self.__default_file_path_base(self._cpparent.filename) suffix = 0 while self.__file_path_taken(possible_path): @@ -3399,7 +3405,7 @@ def init_package(self, package, fname, remove_packages=True): self._remove_packages(fname) if fname is None: # build a file name - fname = self._next_default_file_path() + fname = self.next_default_file_path() package._filename = fname # check file record variable found = False @@ -3437,7 +3443,7 @@ def _update_filename(self, old_fname, new_fname): def _append_package(self, package, fname, update_frecord=True): if fname is None: # build a file name - fname = self._next_default_file_path() + fname = self.next_default_file_path() package._filename = fname if update_frecord: @@ -3457,11 +3463,12 @@ def _append_package(self, package, fname, update_frecord=True): # add the package to the list self._packages.append(package) - def _remove_packages(self, fname=None): + def _remove_packages(self, fname=None, only_pop_from_list=False): rp_list = [] for idx, package in enumerate(self._packages): if fname is None or package.filename == fname: - self._model_or_sim.remove_package(package) + if not only_pop_from_list: + self._model_or_sim.remove_package(package) rp_list.append(idx) for idx in reversed(rp_list): self._packages.pop(idx) diff --git a/flopy/mf6/mfsimbase.py b/flopy/mf6/mfsimbase.py index 898e42836..e924bfebf 100644 --- a/flopy/mf6/mfsimbase.py +++ b/flopy/mf6/mfsimbase.py @@ -254,7 +254,7 @@ def __init__(self, path: Union[str, os.PathLike], mfsim): self.verify_data = True self.debug = False self.verbose = True - self.verbosity_level = VerbosityLevel.normal + self._verbosity_level = VerbosityLevel.normal self.max_columns_user_set = False self.max_columns_auto_set = False self.use_pandas = True @@ -275,6 +275,17 @@ def __init__(self, path: Union[str, os.PathLike], mfsim): # other external files referenced self.referenced_files = {} + @property + def verbosity_level(self): + return self._verbosity_level + + @verbosity_level.setter + def verbosity_level(self, val): + if isinstance(val, VerbosityLevel): + self._verbosity_level = val + elif isinstance(val, int): + self._verbosity_level = VerbosityLevel(val) + @property def lazy_io(self): if not self.auto_set_sizes and not self.verify_data: @@ -614,9 +625,9 @@ def __str__(self): def _get_data_str(self, formal): file_mgt = self.simulation_data.mfpath data_str = ( - "sim_name = {}\nsim_path = {}\nexe_name = " - "{}\n" - "\n".format(self.name, file_mgt.get_sim_path(), self.exe_name) + "sim_name = {}\nsim_path = {}\nexe_name = " "{}\n" "\n".format( + self.name, file_mgt.get_sim_path(), self.exe_name + ) ) for package in self._packagelist: @@ -805,6 +816,9 @@ def load( package="nam", message=message, ) + if models is None: + return instance + for item in models: # resolve model working folder and name file path, name_file = os.path.split(item[1]) @@ -1306,6 +1320,26 @@ def register_solution_package( mfdata_except=mfde, package="nam", message=message ) + def _create_package(self, package_type, package_data): + if package_data is None: + return None + if not isinstance(package_data, dict): + message = ( + "Error occurred while creating the solution package " + f"{package_type}. Package data must be provided in a " + f"dictionary. User provided type {type(package_data)}." + ) + raise MFDataException(package=package_type, message=message) + # find package - only supporting utl packages for now + package_obj = self.package_factory(package_type, "utl") + if package_obj is not None: + # determine file name + if "filename" not in package_data: + package_data["filename"] = f"{self.name}.{package_type}" + # create package which should automatically register with the + # simulation + pkg = package_obj(self, **package_data) + @staticmethod def _rename_package_group(group_dict, name): package_type_count = {} @@ -1535,7 +1569,7 @@ def write_simulation( if not sim_data.max_columns_user_set: # search for dis packages for model in self._models.values(): - dis = model.get_package("dis") + dis = model.get_package("dis", type_only=True) if dis is not None and hasattr(dis, "ncol"): sim_data.max_columns_of_data = dis.ncol.get_data() sim_data.max_columns_user_set = False @@ -1631,6 +1665,7 @@ def run_simulation( normal_msg="normal termination", use_async=False, cargs=None, + custom_print=None, ): """ Run the simulation. @@ -1657,6 +1692,11 @@ def run_simulation( cargs : str or list of strings Additional command line arguments to pass to the executable. default is None + custom_print: callable + Optional callbale for printing. It will replace the builtin + print function. This is useful for shorter prints or integration + into other systems such as GUIs. + default is None, i.e. use the builtion print Returns -------- @@ -1683,6 +1723,7 @@ def run_simulation( normal_msg=normal_msg, use_async=use_async, cargs=cargs, + custom_print=custom_print, ) def delete_output_files(self): @@ -1728,6 +1769,17 @@ def remove_package(self, package_name): self._remove_package(package) + # if this is a package referenced from a filerecord, remove filerecord + # from name file + file_record_name = f"_{package.package_type}_filerecord" + if hasattr(self.name_file, file_record_name): + file_record = getattr(self.name_file, file_record_name) + if isinstance(file_record, mfdata.MFData): + file_record.set_data(None) + if hasattr(self.name_file, package.package_type): + child_pkgs = getattr(self.name_file, package.package_type) + child_pkgs._remove_packages(package.filename, True) + @property def model_dict(self): """ @@ -2101,6 +2153,13 @@ def register_package( package.filename = file_name self._other_files[file_name] = package + # If this package is declared in the namefile options block, + # update namefile + file_record = f"_{package.package_type}_filerecord" + if hasattr(self.name_file, file_record): + fr_obj = getattr(self.name_file, file_record) + fr_obj.set_data(package.filename) + if package.package_type.lower() in self.structure.package_struct_objs: return ( path, diff --git a/flopy/mf6/modflow/__init__.py b/flopy/mf6/modflow/__init__.py index e5a5ce166..8748cf995 100644 --- a/flopy/mf6/modflow/__init__.py +++ b/flopy/mf6/modflow/__init__.py @@ -1,6 +1,26 @@ from .mfsimulation import MFSimulation # isort:skip from .mfems import ModflowEms from .mfgnc import ModflowGnc +from .mfgwe import ModflowGwe +from .mfgweadv import ModflowGweadv +from .mfgwecnd import ModflowGwecnd +from .mfgwectp import ModflowGwectp +from .mfgwedis import ModflowGwedis +from .mfgwedisu import ModflowGwedisu +from .mfgwedisv import ModflowGwedisv +from .mfgweesl import ModflowGweesl +from .mfgweest import ModflowGweest +from .mfgwefmi import ModflowGwefmi +from .mfgwegwe import ModflowGwegwe +from .mfgweic import ModflowGweic +from .mfgwelke import ModflowGwelke +from .mfgwemve import ModflowGwemve +from .mfgwemwe import ModflowGwemwe +from .mfgwenam import ModflowGwenam +from .mfgweoc import ModflowGweoc +from .mfgwesfe import ModflowGwesfe +from .mfgwessm import ModflowGwessm +from .mfgweuze import ModflowGweuze from .mfgwf import ModflowGwf from .mfgwfapi import ModflowGwfapi from .mfgwfbuy import ModflowGwfbuy @@ -14,6 +34,7 @@ from .mfgwfevta import ModflowGwfevta from .mfgwfghb import ModflowGwfghb from .mfgwfgnc import ModflowGwfgnc +from .mfgwfgwe import ModflowGwfgwe from .mfgwfgwf import ModflowGwfgwf from .mfgwfgwt import ModflowGwfgwt from .mfgwfhfb import ModflowGwfhfb @@ -24,6 +45,7 @@ from .mfgwfnam import ModflowGwfnam from .mfgwfnpf import ModflowGwfnpf from .mfgwfoc import ModflowGwfoc +from .mfgwfprt import ModflowGwfprt from .mfgwfrch import ModflowGwfrch from .mfgwfrcha import ModflowGwfrcha from .mfgwfriv import ModflowGwfriv @@ -58,14 +80,26 @@ from .mfmvr import ModflowMvr from .mfmvt import ModflowMvt from .mfnam import ModflowNam +from .mfprt import ModflowPrt +from .mfprtdis import ModflowPrtdis +from .mfprtdisv import ModflowPrtdisv +from .mfprtfmi import ModflowPrtfmi +from .mfprtmip import ModflowPrtmip +from .mfprtnam import ModflowPrtnam +from .mfprtoc import ModflowPrtoc +from .mfprtprp import ModflowPrtprp +from .mfpts import ModflowPts from .mfsimulation import MFSimulation from .mftdis import ModflowTdis from .mfutlats import ModflowUtlats +from .mfutlhpc import ModflowUtlhpc from .mfutllaktab import ModflowUtllaktab from .mfutlobs import ModflowUtlobs from .mfutlsfrtab import ModflowUtlsfrtab from .mfutlspc import ModflowUtlspc from .mfutlspca import ModflowUtlspca +from .mfutlspt import ModflowUtlspt +from .mfutlspta import ModflowUtlspta from .mfutltas import ModflowUtltas from .mfutlts import ModflowUtlts from .mfutltvk import ModflowUtltvk diff --git a/flopy/mf6/modflow/mfems.py b/flopy/mf6/modflow/mfems.py index 5e1f0c05d..93dcce544 100644 --- a/flopy/mf6/modflow/mfems.py +++ b/flopy/mf6/modflow/mfems.py @@ -1,6 +1,6 @@ # DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY # mf6/utils/createpackages.py -# FILE created on February 07, 2024 20:16:08 UTC +# FILE created on May 23, 2024 14:30:07 UTC from .. import mfpackage diff --git a/flopy/mf6/modflow/mfgnc.py b/flopy/mf6/modflow/mfgnc.py index 9b7ddd997..434f39752 100644 --- a/flopy/mf6/modflow/mfgnc.py +++ b/flopy/mf6/modflow/mfgnc.py @@ -1,6 +1,6 @@ # DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY # mf6/utils/createpackages.py -# FILE created on February 07, 2024 20:16:08 UTC +# FILE created on May 23, 2024 14:30:07 UTC from .. import mfpackage from ..data.mfdatautil import ListTemplateGenerator @@ -11,9 +11,9 @@ class ModflowGnc(mfpackage.MFPackage): Parameters ---------- - simulation : MFSimulation - Simulation that this package is a part of. Package is automatically - added to simulation when it is initialized. + parent_model_or_package : MFModel/MFPackage + Parent_model_or_package that this package is a part of. Package is automatically + added to parent_model_or_package when it is initialized. loading_package : bool Do not set this parameter. It is intended for debugging and internal processing purposes only. @@ -193,7 +193,7 @@ class ModflowGnc(mfpackage.MFPackage): def __init__( self, - simulation, + parent_model_or_package, loading_package=False, print_input=None, print_flows=None, @@ -206,7 +206,12 @@ def __init__( **kwargs, ): super().__init__( - simulation, "gnc", filename, pname, loading_package, **kwargs + parent_model_or_package, + "gnc", + filename, + pname, + loading_package, + **kwargs, ) # set up variables diff --git a/flopy/mf6/modflow/mfgwe.py b/flopy/mf6/modflow/mfgwe.py new file mode 100644 index 000000000..b49806347 --- /dev/null +++ b/flopy/mf6/modflow/mfgwe.py @@ -0,0 +1,135 @@ +# DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY +# mf6/utils/createpackages.py +# FILE created on May 23, 2024 14:30:07 UTC +from .. import mfmodel +from ..data.mfdatautil import ArrayTemplateGenerator, ListTemplateGenerator + + +class ModflowGwe(mfmodel.MFModel): + """ + Modflowgwe defines a gwe model + + Parameters + ---------- + modelname : string + name of the model + model_nam_file : string + relative path to the model name file from model working folder + version : string + version of modflow + exe_name : string + model executable name + model_ws : string + model working folder path + sim : MFSimulation + Simulation that this model is a part of. Model is automatically + added to simulation when it is initialized. + list : string + * list (string) is name of the listing file to create for this GWE + model. If not specified, then the name of the list file will be the + basename of the GWE model name file and the ".lst" extension. For + example, if the GWE name file is called "my.model.nam" then the list + file will be called "my.model.lst". + print_input : boolean + * print_input (boolean) keyword to indicate that the list of all model + stress package information will be written to the listing file + immediately after it is read. + print_flows : boolean + * print_flows (boolean) keyword to indicate that the list of all model + package flow rates will be printed to the listing file for every + stress period time step in which "BUDGET PRINT" is specified in + Output Control. If there is no Output Control option and + "PRINT_FLOWS" is specified, then flow rates are printed for the last + time step of each stress period. + save_flows : boolean + * save_flows (boolean) keyword to indicate that all model package flow + terms will be written to the file specified with "BUDGET FILEOUT" in + Output Control. + packages : [ftype, fname, pname] + * ftype (string) is the file type, which must be one of the following + character values shown in table ref{table:ftype-gwe}. Ftype may be + entered in any combination of uppercase and lowercase. + * fname (string) is the name of the file containing the package input. + The path to the file should be included if the file is not located in + the folder where the program was run. + * pname (string) is the user-defined name for the package. PNAME is + restricted to 16 characters. No spaces are allowed in PNAME. PNAME + character values are read and stored by the program for stress + packages only. These names may be useful for labeling purposes when + multiple stress packages of the same type are located within a single + GWE Model. If PNAME is specified for a stress package, then PNAME + will be used in the flow budget table in the listing file; it will + also be used for the text entry in the cell-by-cell budget file. + PNAME is case insensitive and is stored in all upper case letters. + + Methods + ------- + load : (simulation : MFSimulationData, model_name : string, + namfile : string, version : string, exe_name : string, + model_ws : string, strict : boolean) : MFSimulation + a class method that loads a model from files + """ + + model_type = "gwe" + + def __init__( + self, + simulation, + modelname="model", + model_nam_file=None, + version="mf6", + exe_name="mf6", + model_rel_path=".", + list=None, + print_input=None, + print_flows=None, + save_flows=None, + **kwargs, + ): + super().__init__( + simulation, + model_type="gwe6", + modelname=modelname, + model_nam_file=model_nam_file, + version=version, + exe_name=exe_name, + model_rel_path=model_rel_path, + **kwargs, + ) + + self.name_file.list.set_data(list) + self.name_file.print_input.set_data(print_input) + self.name_file.print_flows.set_data(print_flows) + self.name_file.save_flows.set_data(save_flows) + + self.list = self.name_file.list + self.print_input = self.name_file.print_input + self.print_flows = self.name_file.print_flows + self.save_flows = self.name_file.save_flows + + @classmethod + def load( + cls, + simulation, + structure, + modelname="NewModel", + model_nam_file="modflowtest.nam", + version="mf6", + exe_name="mf6", + strict=True, + model_rel_path=".", + load_only=None, + ): + return mfmodel.MFModel.load_base( + cls, + simulation, + structure, + modelname, + model_nam_file, + "gwe6", + version, + exe_name, + strict, + model_rel_path, + load_only, + ) diff --git a/flopy/mf6/modflow/mfgweadv.py b/flopy/mf6/modflow/mfgweadv.py new file mode 100644 index 000000000..bc1f70bb4 --- /dev/null +++ b/flopy/mf6/modflow/mfgweadv.py @@ -0,0 +1,67 @@ +# DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY +# mf6/utils/createpackages.py +# FILE created on May 23, 2024 14:30:07 UTC +from .. import mfpackage + + +class ModflowGweadv(mfpackage.MFPackage): + """ + ModflowGweadv defines a adv package within a gwe6 model. + + Parameters + ---------- + model : MFModel + Model that this package is a part of. Package is automatically + added to model when it is initialized. + loading_package : bool + Do not set this parameter. It is intended for debugging and internal + processing purposes only. + scheme : string + * scheme (string) scheme used to solve the advection term. Can be + upstream, central, or TVD. If not specified, upstream weighting is + the default weighting scheme. + filename : String + File name for this package. + pname : String + Package name for this package. + parent_file : MFPackage + Parent package file that references this package. Only needed for + utility packages (mfutl*). For example, mfutllaktab package must have + a mfgwflak package parent_file. + + """ + + package_abbr = "gweadv" + _package_type = "adv" + dfn_file_name = "gwe-adv.dfn" + + dfn = [ + [ + "header", + ], + [ + "block options", + "name scheme", + "type string", + "valid central upstream tvd", + "reader urword", + "optional true", + ], + ] + + def __init__( + self, + model, + loading_package=False, + scheme=None, + filename=None, + pname=None, + **kwargs, + ): + super().__init__( + model, "adv", filename, pname, loading_package, **kwargs + ) + + # set up variables + self.scheme = self.build_mfdata("scheme", scheme) + self._init_complete = True diff --git a/flopy/mf6/modflow/mfgwecnd.py b/flopy/mf6/modflow/mfgwecnd.py new file mode 100644 index 000000000..f8954199d --- /dev/null +++ b/flopy/mf6/modflow/mfgwecnd.py @@ -0,0 +1,226 @@ +# DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY +# mf6/utils/createpackages.py +# FILE created on May 23, 2024 14:30:07 UTC +from .. import mfpackage +from ..data.mfdatautil import ArrayTemplateGenerator + + +class ModflowGwecnd(mfpackage.MFPackage): + """ + ModflowGwecnd defines a cnd package within a gwe6 model. + + Parameters + ---------- + model : MFModel + Model that this package is a part of. Package is automatically + added to model when it is initialized. + loading_package : bool + Do not set this parameter. It is intended for debugging and internal + processing purposes only. + xt3d_off : boolean + * xt3d_off (boolean) deactivate the xt3d method and use the faster and + less accurate approximation. This option may provide a fast and + accurate solution under some circumstances, such as when flow aligns + with the model grid, there is no mechanical dispersion, or when the + longitudinal and transverse dispersivities are equal. This option may + also be used to assess the computational demand of the XT3D approach + by noting the run time differences with and without this option on. + xt3d_rhs : boolean + * xt3d_rhs (boolean) add xt3d terms to right-hand side, when possible. + This option uses less memory, but may require more iterations. + export_array_ascii : boolean + * export_array_ascii (boolean) keyword that specifies input griddata + arrays should be written to layered ascii output files. + alh : [double] + * alh (double) longitudinal dispersivity in horizontal direction. If + flow is strictly horizontal, then this is the longitudinal + dispersivity that will be used. If flow is not strictly horizontal or + strictly vertical, then the longitudinal dispersivity is a function + of both ALH and ALV. If mechanical dispersion is represented (by + specifying any dispersivity values) then this array is required. + alv : [double] + * alv (double) longitudinal dispersivity in vertical direction. If flow + is strictly vertical, then this is the longitudinal dispsersivity + value that will be used. If flow is not strictly horizontal or + strictly vertical, then the longitudinal dispersivity is a function + of both ALH and ALV. If this value is not specified and mechanical + dispersion is represented, then this array is set equal to ALH. + ath1 : [double] + * ath1 (double) transverse dispersivity in horizontal direction. This + is the transverse dispersivity value for the second ellipsoid axis. + If flow is strictly horizontal and directed in the x direction (along + a row for a regular grid), then this value controls spreading in the + y direction. If mechanical dispersion is represented (by specifying + any dispersivity values) then this array is required. + ath2 : [double] + * ath2 (double) transverse dispersivity in horizontal direction. This + is the transverse dispersivity value for the third ellipsoid axis. If + flow is strictly horizontal and directed in the x direction (along a + row for a regular grid), then this value controls spreading in the z + direction. If this value is not specified and mechanical dispersion + is represented, then this array is set equal to ATH1. + atv : [double] + * atv (double) transverse dispersivity when flow is in vertical + direction. If flow is strictly vertical and directed in the z + direction, then this value controls spreading in the x and y + directions. If this value is not specified and mechanical dispersion + is represented, then this array is set equal to ATH2. + ktw : [double] + * ktw (double) thermal conductivity of the simulated fluid. Note that + the CND Package does not account for the tortuosity of the flow paths + when solving for the conductive spread of heat. If tortuosity plays + an important role in the thermal conductivity calculation, its effect + should be reflected in the value specified for KTW. + kts : [double] + * kts (double) thermal conductivity of the aquifer material + filename : String + File name for this package. + pname : String + Package name for this package. + parent_file : MFPackage + Parent package file that references this package. Only needed for + utility packages (mfutl*). For example, mfutllaktab package must have + a mfgwflak package parent_file. + + """ + + alh = ArrayTemplateGenerator(("gwe6", "cnd", "griddata", "alh")) + alv = ArrayTemplateGenerator(("gwe6", "cnd", "griddata", "alv")) + ath1 = ArrayTemplateGenerator(("gwe6", "cnd", "griddata", "ath1")) + ath2 = ArrayTemplateGenerator(("gwe6", "cnd", "griddata", "ath2")) + atv = ArrayTemplateGenerator(("gwe6", "cnd", "griddata", "atv")) + ktw = ArrayTemplateGenerator(("gwe6", "cnd", "griddata", "ktw")) + kts = ArrayTemplateGenerator(("gwe6", "cnd", "griddata", "kts")) + package_abbr = "gwecnd" + _package_type = "cnd" + dfn_file_name = "gwe-cnd.dfn" + + dfn = [ + [ + "header", + ], + [ + "block options", + "name xt3d_off", + "type keyword", + "shape", + "reader urword", + "optional true", + ], + [ + "block options", + "name xt3d_rhs", + "type keyword", + "shape", + "reader urword", + "optional true", + ], + [ + "block options", + "name export_array_ascii", + "type keyword", + "reader urword", + "optional true", + "mf6internal export_ascii", + ], + [ + "block griddata", + "name alh", + "type double precision", + "shape (nodes)", + "reader readarray", + "layered true", + "optional true", + ], + [ + "block griddata", + "name alv", + "type double precision", + "shape (nodes)", + "reader readarray", + "layered true", + "optional true", + ], + [ + "block griddata", + "name ath1", + "type double precision", + "shape (nodes)", + "reader readarray", + "layered true", + "optional true", + ], + [ + "block griddata", + "name ath2", + "type double precision", + "shape (nodes)", + "reader readarray", + "layered true", + "optional true", + ], + [ + "block griddata", + "name atv", + "type double precision", + "shape (nodes)", + "reader readarray", + "layered true", + "optional true", + ], + [ + "block griddata", + "name ktw", + "type double precision", + "shape (nodes)", + "reader readarray", + "layered true", + "optional true", + ], + [ + "block griddata", + "name kts", + "type double precision", + "shape (nodes)", + "reader readarray", + "layered true", + "optional true", + ], + ] + + def __init__( + self, + model, + loading_package=False, + xt3d_off=None, + xt3d_rhs=None, + export_array_ascii=None, + alh=None, + alv=None, + ath1=None, + ath2=None, + atv=None, + ktw=None, + kts=None, + filename=None, + pname=None, + **kwargs, + ): + super().__init__( + model, "cnd", filename, pname, loading_package, **kwargs + ) + + # set up variables + self.xt3d_off = self.build_mfdata("xt3d_off", xt3d_off) + self.xt3d_rhs = self.build_mfdata("xt3d_rhs", xt3d_rhs) + self.export_array_ascii = self.build_mfdata( + "export_array_ascii", export_array_ascii + ) + self.alh = self.build_mfdata("alh", alh) + self.alv = self.build_mfdata("alv", alv) + self.ath1 = self.build_mfdata("ath1", ath1) + self.ath2 = self.build_mfdata("ath2", ath2) + self.atv = self.build_mfdata("atv", atv) + self.ktw = self.build_mfdata("ktw", ktw) + self.kts = self.build_mfdata("kts", kts) + self._init_complete = True diff --git a/flopy/mf6/modflow/mfgwectp.py b/flopy/mf6/modflow/mfgwectp.py new file mode 100644 index 000000000..c6193dcad --- /dev/null +++ b/flopy/mf6/modflow/mfgwectp.py @@ -0,0 +1,358 @@ +# DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY +# mf6/utils/createpackages.py +# FILE created on May 23, 2024 14:30:07 UTC +from .. import mfpackage +from ..data.mfdatautil import ListTemplateGenerator + + +class ModflowGwectp(mfpackage.MFPackage): + """ + ModflowGwectp defines a ctp package within a gwe6 model. + + Parameters + ---------- + model : MFModel + Model that this package is a part of. Package is automatically + added to model when it is initialized. + loading_package : bool + Do not set this parameter. It is intended for debugging and internal + processing purposes only. + auxiliary : [string] + * auxiliary (string) defines an array of one or more auxiliary variable + names. There is no limit on the number of auxiliary variables that + can be provided on this line; however, lists of information provided + in subsequent blocks must have a column of data for each auxiliary + variable name defined here. The number of auxiliary variables + detected on this line determines the value for naux. Comments cannot + be provided anywhere on this line as they will be interpreted as + auxiliary variable names. Auxiliary variables may not be used by the + package, but they will be available for use by other parts of the + program. The program will terminate with an error if auxiliary + variables are specified on more than one line in the options block. + auxmultname : string + * auxmultname (string) name of auxiliary variable to be used as + multiplier of temperature value. + boundnames : boolean + * boundnames (boolean) keyword to indicate that boundary names may be + provided with the list of constant temperature cells. + print_input : boolean + * print_input (boolean) keyword to indicate that the list of constant + temperature information will be written to the listing file + immediately after it is read. + print_flows : boolean + * print_flows (boolean) keyword to indicate that the list of constant + temperature flow rates will be printed to the listing file for every + stress period time step in which "BUDGET PRINT" is specified in + Output Control. If there is no Output Control option and + "PRINT_FLOWS" is specified, then flow rates are printed for the last + time step of each stress period. + save_flows : boolean + * save_flows (boolean) keyword to indicate that constant temperature + flow terms will be written to the file specified with "BUDGET + FILEOUT" in Output Control. + timeseries : {varname:data} or timeseries data + * Contains data for the ts package. Data can be stored in a dictionary + containing data for the ts package with variable names as keys and + package data as values. Data just for the timeseries variable is also + acceptable. See ts package documentation for more information. + observations : {varname:data} or continuous data + * Contains data for the obs package. Data can be stored in a dictionary + containing data for the obs package with variable names as keys and + package data as values. Data just for the observations variable is + also acceptable. See obs package documentation for more information. + maxbound : integer + * maxbound (integer) integer value specifying the maximum number of + constant temperatures cells that will be specified for use during any + stress period. + stress_period_data : [cellid, temp, aux, boundname] + * cellid ((integer, ...)) is the cell identifier, and depends on the + type of grid that is used for the simulation. For a structured grid + that uses the DIS input file, CELLID is the layer, row, and column. + For a grid that uses the DISV input file, CELLID is the layer and + CELL2D number. If the model uses the unstructured discretization + (DISU) input file, CELLID is the node number for the cell. This + argument is an index variable, which means that it should be treated + as zero-based when working with FloPy and Python. Flopy will + automatically subtract one when loading index variables and add one + when writing index variables. + * temp (double) is the constant temperature value. If the Options block + includes a TIMESERIESFILE entry (see the "Time-Variable Input" + section), values can be obtained from a time series by entering the + time-series name in place of a numeric value. + * aux (double) represents the values of the auxiliary variables for + each constant temperature. The values of auxiliary variables must be + present for each constant temperature. The values must be specified + in the order of the auxiliary variables specified in the OPTIONS + block. If the package supports time series and the Options block + includes a TIMESERIESFILE entry (see the "Time-Variable Input" + section), values can be obtained from a time series by entering the + time-series name in place of a numeric value. + * boundname (string) name of the constant temperature cell. BOUNDNAME + is an ASCII character variable that can contain as many as 40 + characters. If BOUNDNAME contains spaces in it, then the entire name + must be enclosed within single quotes. + filename : String + File name for this package. + pname : String + Package name for this package. + parent_file : MFPackage + Parent package file that references this package. Only needed for + utility packages (mfutl*). For example, mfutllaktab package must have + a mfgwflak package parent_file. + + """ + + auxiliary = ListTemplateGenerator(("gwe6", "ctp", "options", "auxiliary")) + ts_filerecord = ListTemplateGenerator( + ("gwe6", "ctp", "options", "ts_filerecord") + ) + obs_filerecord = ListTemplateGenerator( + ("gwe6", "ctp", "options", "obs_filerecord") + ) + stress_period_data = ListTemplateGenerator( + ("gwe6", "ctp", "period", "stress_period_data") + ) + package_abbr = "gwectp" + _package_type = "ctp" + dfn_file_name = "gwe-ctp.dfn" + + dfn = [ + [ + "header", + "multi-package", + ], + [ + "block options", + "name auxiliary", + "type string", + "shape (naux)", + "reader urword", + "optional true", + ], + [ + "block options", + "name auxmultname", + "type string", + "shape", + "reader urword", + "optional true", + ], + [ + "block options", + "name boundnames", + "type keyword", + "shape", + "reader urword", + "optional true", + ], + [ + "block options", + "name print_input", + "type keyword", + "reader urword", + "optional true", + "mf6internal iprflow", + ], + [ + "block options", + "name print_flows", + "type keyword", + "reader urword", + "optional true", + "mf6internal ipakcb", + ], + [ + "block options", + "name save_flows", + "type keyword", + "reader urword", + "optional true", + "mf6internal iprpak", + ], + [ + "block options", + "name ts_filerecord", + "type record ts6 filein ts6_filename", + "shape", + "reader urword", + "tagged true", + "optional true", + "construct_package ts", + "construct_data timeseries", + "parameter_name timeseries", + ], + [ + "block options", + "name ts6", + "type keyword", + "shape", + "in_record true", + "reader urword", + "tagged true", + "optional false", + ], + [ + "block options", + "name filein", + "type keyword", + "shape", + "in_record true", + "reader urword", + "tagged true", + "optional false", + ], + [ + "block options", + "name ts6_filename", + "type string", + "preserve_case true", + "in_record true", + "reader urword", + "optional false", + "tagged false", + ], + [ + "block options", + "name obs_filerecord", + "type record obs6 filein obs6_filename", + "shape", + "reader urword", + "tagged true", + "optional true", + "construct_package obs", + "construct_data continuous", + "parameter_name observations", + ], + [ + "block options", + "name obs6", + "type keyword", + "shape", + "in_record true", + "reader urword", + "tagged true", + "optional false", + ], + [ + "block options", + "name obs6_filename", + "type string", + "preserve_case true", + "in_record true", + "tagged false", + "reader urword", + "optional false", + ], + [ + "block dimensions", + "name maxbound", + "type integer", + "reader urword", + "optional false", + ], + [ + "block period", + "name iper", + "type integer", + "block_variable True", + "in_record true", + "tagged false", + "shape", + "valid", + "reader urword", + "optional false", + ], + [ + "block period", + "name stress_period_data", + "type recarray cellid temp aux boundname", + "shape (maxbound)", + "reader urword", + "mf6internal spd", + ], + [ + "block period", + "name cellid", + "type integer", + "shape (ncelldim)", + "tagged false", + "in_record true", + "reader urword", + ], + [ + "block period", + "name temp", + "type double precision", + "shape", + "tagged false", + "in_record true", + "reader urword", + "time_series true", + "mf6internal tspvar", + ], + [ + "block period", + "name aux", + "type double precision", + "in_record true", + "tagged false", + "shape (naux)", + "reader urword", + "optional true", + "time_series true", + "mf6internal auxvar", + ], + [ + "block period", + "name boundname", + "type string", + "shape", + "tagged false", + "in_record true", + "reader urword", + "optional true", + ], + ] + + def __init__( + self, + model, + loading_package=False, + auxiliary=None, + auxmultname=None, + boundnames=None, + print_input=None, + print_flows=None, + save_flows=None, + timeseries=None, + observations=None, + maxbound=None, + stress_period_data=None, + filename=None, + pname=None, + **kwargs, + ): + super().__init__( + model, "ctp", filename, pname, loading_package, **kwargs + ) + + # set up variables + self.auxiliary = self.build_mfdata("auxiliary", auxiliary) + self.auxmultname = self.build_mfdata("auxmultname", auxmultname) + self.boundnames = self.build_mfdata("boundnames", boundnames) + self.print_input = self.build_mfdata("print_input", print_input) + self.print_flows = self.build_mfdata("print_flows", print_flows) + self.save_flows = self.build_mfdata("save_flows", save_flows) + self._ts_filerecord = self.build_mfdata("ts_filerecord", None) + self._ts_package = self.build_child_package( + "ts", timeseries, "timeseries", self._ts_filerecord + ) + self._obs_filerecord = self.build_mfdata("obs_filerecord", None) + self._obs_package = self.build_child_package( + "obs", observations, "continuous", self._obs_filerecord + ) + self.maxbound = self.build_mfdata("maxbound", maxbound) + self.stress_period_data = self.build_mfdata( + "stress_period_data", stress_period_data + ) + self._init_complete = True diff --git a/flopy/mf6/modflow/mfgwedis.py b/flopy/mf6/modflow/mfgwedis.py new file mode 100644 index 000000000..c2908e593 --- /dev/null +++ b/flopy/mf6/modflow/mfgwedis.py @@ -0,0 +1,253 @@ +# DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY +# mf6/utils/createpackages.py +# FILE created on May 23, 2024 14:30:07 UTC +from .. import mfpackage +from ..data.mfdatautil import ArrayTemplateGenerator + + +class ModflowGwedis(mfpackage.MFPackage): + """ + ModflowGwedis defines a dis package within a gwe6 model. + + Parameters + ---------- + model : MFModel + Model that this package is a part of. Package is automatically + added to model when it is initialized. + loading_package : bool + Do not set this parameter. It is intended for debugging and internal + processing purposes only. + length_units : string + * length_units (string) is the length units used for this model. Values + can be "FEET", "METERS", or "CENTIMETERS". If not specified, the + default is "UNKNOWN". + nogrb : boolean + * nogrb (boolean) keyword to deactivate writing of the binary grid + file. + xorigin : double + * xorigin (double) x-position of the lower-left corner of the model + grid. A default value of zero is assigned if not specified. The value + for XORIGIN does not affect the model simulation, but it is written + to the binary grid file so that postprocessors can locate the grid in + space. + yorigin : double + * yorigin (double) y-position of the lower-left corner of the model + grid. If not specified, then a default value equal to zero is used. + The value for YORIGIN does not affect the model simulation, but it is + written to the binary grid file so that postprocessors can locate the + grid in space. + angrot : double + * angrot (double) counter-clockwise rotation angle (in degrees) of the + lower-left corner of the model grid. If not specified, then a default + value of 0.0 is assigned. The value for ANGROT does not affect the + model simulation, but it is written to the binary grid file so that + postprocessors can locate the grid in space. + export_array_ascii : boolean + * export_array_ascii (boolean) keyword that specifies input griddata + arrays should be written to layered ascii output files. + nlay : integer + * nlay (integer) is the number of layers in the model grid. + nrow : integer + * nrow (integer) is the number of rows in the model grid. + ncol : integer + * ncol (integer) is the number of columns in the model grid. + delr : [double] + * delr (double) is the column spacing in the row direction. + delc : [double] + * delc (double) is the row spacing in the column direction. + top : [double] + * top (double) is the top elevation for each cell in the top model + layer. + botm : [double] + * botm (double) is the bottom elevation for each cell. + idomain : [integer] + * idomain (integer) is an optional array that characterizes the + existence status of a cell. If the IDOMAIN array is not specified, + then all model cells exist within the solution. If the IDOMAIN value + for a cell is 0, the cell does not exist in the simulation. Input and + output values will be read and written for the cell, but internal to + the program, the cell is excluded from the solution. If the IDOMAIN + value for a cell is 1, the cell exists in the simulation. If the + IDOMAIN value for a cell is -1, the cell does not exist in the + simulation. Furthermore, the first existing cell above will be + connected to the first existing cell below. This type of cell is + referred to as a "vertical pass through" cell. + filename : String + File name for this package. + pname : String + Package name for this package. + parent_file : MFPackage + Parent package file that references this package. Only needed for + utility packages (mfutl*). For example, mfutllaktab package must have + a mfgwflak package parent_file. + + """ + + delr = ArrayTemplateGenerator(("gwe6", "dis", "griddata", "delr")) + delc = ArrayTemplateGenerator(("gwe6", "dis", "griddata", "delc")) + top = ArrayTemplateGenerator(("gwe6", "dis", "griddata", "top")) + botm = ArrayTemplateGenerator(("gwe6", "dis", "griddata", "botm")) + idomain = ArrayTemplateGenerator(("gwe6", "dis", "griddata", "idomain")) + package_abbr = "gwedis" + _package_type = "dis" + dfn_file_name = "gwe-dis.dfn" + + dfn = [ + [ + "header", + ], + [ + "block options", + "name length_units", + "type string", + "reader urword", + "optional true", + ], + [ + "block options", + "name nogrb", + "type keyword", + "reader urword", + "optional true", + ], + [ + "block options", + "name xorigin", + "type double precision", + "reader urword", + "optional true", + ], + [ + "block options", + "name yorigin", + "type double precision", + "reader urword", + "optional true", + ], + [ + "block options", + "name angrot", + "type double precision", + "reader urword", + "optional true", + ], + [ + "block options", + "name export_array_ascii", + "type keyword", + "reader urword", + "optional true", + "mf6internal export_ascii", + ], + [ + "block dimensions", + "name nlay", + "type integer", + "reader urword", + "optional false", + "default_value 1", + ], + [ + "block dimensions", + "name nrow", + "type integer", + "reader urword", + "optional false", + "default_value 2", + ], + [ + "block dimensions", + "name ncol", + "type integer", + "reader urword", + "optional false", + "default_value 2", + ], + [ + "block griddata", + "name delr", + "type double precision", + "shape (ncol)", + "reader readarray", + "default_value 1.0", + ], + [ + "block griddata", + "name delc", + "type double precision", + "shape (nrow)", + "reader readarray", + "default_value 1.0", + ], + [ + "block griddata", + "name top", + "type double precision", + "shape (ncol, nrow)", + "reader readarray", + "default_value 1.0", + ], + [ + "block griddata", + "name botm", + "type double precision", + "shape (ncol, nrow, nlay)", + "reader readarray", + "layered true", + "default_value 0.", + ], + [ + "block griddata", + "name idomain", + "type integer", + "shape (ncol, nrow, nlay)", + "reader readarray", + "layered true", + "optional true", + ], + ] + + def __init__( + self, + model, + loading_package=False, + length_units=None, + nogrb=None, + xorigin=None, + yorigin=None, + angrot=None, + export_array_ascii=None, + nlay=1, + nrow=2, + ncol=2, + delr=1.0, + delc=1.0, + top=1.0, + botm=0.0, + idomain=None, + filename=None, + pname=None, + **kwargs, + ): + super().__init__( + model, "dis", filename, pname, loading_package, **kwargs + ) + + # set up variables + self.length_units = self.build_mfdata("length_units", length_units) + self.nogrb = self.build_mfdata("nogrb", nogrb) + self.xorigin = self.build_mfdata("xorigin", xorigin) + self.yorigin = self.build_mfdata("yorigin", yorigin) + self.angrot = self.build_mfdata("angrot", angrot) + self.export_array_ascii = self.build_mfdata( + "export_array_ascii", export_array_ascii + ) + self.nlay = self.build_mfdata("nlay", nlay) + self.nrow = self.build_mfdata("nrow", nrow) + self.ncol = self.build_mfdata("ncol", ncol) + self.delr = self.build_mfdata("delr", delr) + self.delc = self.build_mfdata("delc", delc) + self.top = self.build_mfdata("top", top) + self.botm = self.build_mfdata("botm", botm) + self.idomain = self.build_mfdata("idomain", idomain) + self._init_complete = True diff --git a/flopy/mf6/modflow/mfgwedisu.py b/flopy/mf6/modflow/mfgwedisu.py new file mode 100644 index 000000000..2d21804ab --- /dev/null +++ b/flopy/mf6/modflow/mfgwedisu.py @@ -0,0 +1,521 @@ +# DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY +# mf6/utils/createpackages.py +# FILE created on May 23, 2024 14:30:07 UTC +from .. import mfpackage +from ..data.mfdatautil import ArrayTemplateGenerator, ListTemplateGenerator + + +class ModflowGwedisu(mfpackage.MFPackage): + """ + ModflowGwedisu defines a disu package within a gwe6 model. + + Parameters + ---------- + model : MFModel + Model that this package is a part of. Package is automatically + added to model when it is initialized. + loading_package : bool + Do not set this parameter. It is intended for debugging and internal + processing purposes only. + length_units : string + * length_units (string) is the length units used for this model. Values + can be "FEET", "METERS", or "CENTIMETERS". If not specified, the + default is "UNKNOWN". + nogrb : boolean + * nogrb (boolean) keyword to deactivate writing of the binary grid + file. + xorigin : double + * xorigin (double) x-position of the origin used for model grid + vertices. This value should be provided in a real-world coordinate + system. A default value of zero is assigned if not specified. The + value for XORIGIN does not affect the model simulation, but it is + written to the binary grid file so that postprocessors can locate the + grid in space. + yorigin : double + * yorigin (double) y-position of the origin used for model grid + vertices. This value should be provided in a real-world coordinate + system. If not specified, then a default value equal to zero is used. + The value for YORIGIN does not affect the model simulation, but it is + written to the binary grid file so that postprocessors can locate the + grid in space. + angrot : double + * angrot (double) counter-clockwise rotation angle (in degrees) of the + model grid coordinate system relative to a real-world coordinate + system. If not specified, then a default value of 0.0 is assigned. + The value for ANGROT does not affect the model simulation, but it is + written to the binary grid file so that postprocessors can locate the + grid in space. + vertical_offset_tolerance : double + * vertical_offset_tolerance (double) checks are performed to ensure + that the top of a cell is not higher than the bottom of an overlying + cell. This option can be used to specify the tolerance that is used + for checking. If top of a cell is above the bottom of an overlying + cell by a value less than this tolerance, then the program will not + terminate with an error. The default value is zero. This option + should generally not be used. + export_array_ascii : boolean + * export_array_ascii (boolean) keyword that specifies input griddata + arrays should be written to layered ascii output files. + nodes : integer + * nodes (integer) is the number of cells in the model grid. + nja : integer + * nja (integer) is the sum of the number of connections and NODES. When + calculating the total number of connections, the connection between + cell n and cell m is considered to be different from the connection + between cell m and cell n. Thus, NJA is equal to the total number of + connections, including n to m and m to n, and the total number of + cells. + nvert : integer + * nvert (integer) is the total number of (x, y) vertex pairs used to + define the plan-view shape of each cell in the model grid. If NVERT + is not specified or is specified as zero, then the VERTICES and + CELL2D blocks below are not read. NVERT and the accompanying VERTICES + and CELL2D blocks should be specified for most simulations. If the + XT3D or SAVE_SPECIFIC_DISCHARGE options are specified in the NPF + Package, then this information is required. + top : [double] + * top (double) is the top elevation for each cell in the model grid. + bot : [double] + * bot (double) is the bottom elevation for each cell. + area : [double] + * area (double) is the cell surface area (in plan view). + idomain : [integer] + * idomain (integer) is an optional array that characterizes the + existence status of a cell. If the IDOMAIN array is not specified, + then all model cells exist within the solution. If the IDOMAIN value + for a cell is 0, the cell does not exist in the simulation. Input and + output values will be read and written for the cell, but internal to + the program, the cell is excluded from the solution. If the IDOMAIN + value for a cell is 1 or greater, the cell exists in the simulation. + IDOMAIN values of -1 cannot be specified for the DISU Package. + iac : [integer] + * iac (integer) is the number of connections (plus 1) for each cell. + The sum of all the entries in IAC must be equal to NJA. + ja : [integer] + * ja (integer) is a list of cell number (n) followed by its connecting + cell numbers (m) for each of the m cells connected to cell n. The + number of values to provide for cell n is IAC(n). This list is + sequentially provided for the first to the last cell. The first value + in the list must be cell n itself, and the remaining cells must be + listed in an increasing order (sorted from lowest number to highest). + Note that the cell and its connections are only supplied for the GWE + cells and their connections to the other GWE cells. Also note that + the JA list input may be divided such that every node and its + connectivity list can be on a separate line for ease in readability + of the file. To further ease readability of the file, the node number + of the cell whose connectivity is subsequently listed, may be + expressed as a negative number, the sign of which is subsequently + converted to positive by the code. This argument is an index + variable, which means that it should be treated as zero-based when + working with FloPy and Python. Flopy will automatically subtract one + when loading index variables and add one when writing index + variables. + ihc : [integer] + * ihc (integer) is an index array indicating the direction between node + n and all of its m connections. If IHC = 0 then cell n and cell m are + connected in the vertical direction. Cell n overlies cell m if the + cell number for n is less than m; cell m overlies cell n if the cell + number for m is less than n. If IHC = 1 then cell n and cell m are + connected in the horizontal direction. If IHC = 2 then cell n and + cell m are connected in the horizontal direction, and the connection + is vertically staggered. A vertically staggered connection is one in + which a cell is horizontally connected to more than one cell in a + horizontal connection. + cl12 : [double] + * cl12 (double) is the array containing connection lengths between the + center of cell n and the shared face with each adjacent m cell. + hwva : [double] + * hwva (double) is a symmetric array of size NJA. For horizontal + connections, entries in HWVA are the horizontal width perpendicular + to flow. For vertical connections, entries in HWVA are the vertical + area for flow. Thus, values in the HWVA array contain dimensions of + both length and area. Entries in the HWVA array have a one-to-one + correspondence with the connections specified in the JA array. + Likewise, there is a one-to-one correspondence between entries in the + HWVA array and entries in the IHC array, which specifies the + connection type (horizontal or vertical). Entries in the HWVA array + must be symmetric; the program will terminate with an error if the + value for HWVA for an n to m connection does not equal the value for + HWVA for the corresponding n to m connection. + angldegx : [double] + * angldegx (double) is the angle (in degrees) between the horizontal + x-axis and the outward normal to the face between a cell and its + connecting cells. The angle varies between zero and 360.0 degrees, + where zero degrees points in the positive x-axis direction, and 90 + degrees points in the positive y-axis direction. ANGLDEGX is only + needed if horizontal anisotropy is specified in the NPF Package, if + the XT3D option is used in the NPF Package, or if the + SAVE_SPECIFIC_DISCHARGE option is specified in the NPF Package. + ANGLDEGX does not need to be specified if these conditions are not + met. ANGLDEGX is of size NJA; values specified for vertical + connections and for the diagonal position are not used. Note that + ANGLDEGX is read in degrees, which is different from MODFLOW-USG, + which reads a similar variable (ANGLEX) in radians. + vertices : [iv, xv, yv] + * iv (integer) is the vertex number. Records in the VERTICES block must + be listed in consecutive order from 1 to NVERT. This argument is an + index variable, which means that it should be treated as zero-based + when working with FloPy and Python. Flopy will automatically subtract + one when loading index variables and add one when writing index + variables. + * xv (double) is the x-coordinate for the vertex. + * yv (double) is the y-coordinate for the vertex. + cell2d : [icell2d, xc, yc, ncvert, icvert] + * icell2d (integer) is the cell2d number. Records in the CELL2D block + must be listed in consecutive order from 1 to NODES. This argument is + an index variable, which means that it should be treated as zero- + based when working with FloPy and Python. Flopy will automatically + subtract one when loading index variables and add one when writing + index variables. + * xc (double) is the x-coordinate for the cell center. + * yc (double) is the y-coordinate for the cell center. + * ncvert (integer) is the number of vertices required to define the + cell. There may be a different number of vertices for each cell. + * icvert (integer) is an array of integer values containing vertex + numbers (in the VERTICES block) used to define the cell. Vertices + must be listed in clockwise order. This argument is an index + variable, which means that it should be treated as zero-based when + working with FloPy and Python. Flopy will automatically subtract one + when loading index variables and add one when writing index + variables. + filename : String + File name for this package. + pname : String + Package name for this package. + parent_file : MFPackage + Parent package file that references this package. Only needed for + utility packages (mfutl*). For example, mfutllaktab package must have + a mfgwflak package parent_file. + + """ + + top = ArrayTemplateGenerator(("gwe6", "disu", "griddata", "top")) + bot = ArrayTemplateGenerator(("gwe6", "disu", "griddata", "bot")) + area = ArrayTemplateGenerator(("gwe6", "disu", "griddata", "area")) + idomain = ArrayTemplateGenerator(("gwe6", "disu", "griddata", "idomain")) + iac = ArrayTemplateGenerator(("gwe6", "disu", "connectiondata", "iac")) + ja = ArrayTemplateGenerator(("gwe6", "disu", "connectiondata", "ja")) + ihc = ArrayTemplateGenerator(("gwe6", "disu", "connectiondata", "ihc")) + cl12 = ArrayTemplateGenerator(("gwe6", "disu", "connectiondata", "cl12")) + hwva = ArrayTemplateGenerator(("gwe6", "disu", "connectiondata", "hwva")) + angldegx = ArrayTemplateGenerator( + ("gwe6", "disu", "connectiondata", "angldegx") + ) + vertices = ListTemplateGenerator(("gwe6", "disu", "vertices", "vertices")) + cell2d = ListTemplateGenerator(("gwe6", "disu", "cell2d", "cell2d")) + package_abbr = "gwedisu" + _package_type = "disu" + dfn_file_name = "gwe-disu.dfn" + + dfn = [ + [ + "header", + ], + [ + "block options", + "name length_units", + "type string", + "reader urword", + "optional true", + ], + [ + "block options", + "name nogrb", + "type keyword", + "reader urword", + "optional true", + ], + [ + "block options", + "name xorigin", + "type double precision", + "reader urword", + "optional true", + ], + [ + "block options", + "name yorigin", + "type double precision", + "reader urword", + "optional true", + ], + [ + "block options", + "name angrot", + "type double precision", + "reader urword", + "optional true", + ], + [ + "block options", + "name vertical_offset_tolerance", + "type double precision", + "reader urword", + "optional true", + "default_value 0.0", + "mf6internal voffsettol", + ], + [ + "block options", + "name export_array_ascii", + "type keyword", + "reader urword", + "optional true", + "mf6internal export_ascii", + ], + [ + "block dimensions", + "name nodes", + "type integer", + "reader urword", + "optional false", + ], + [ + "block dimensions", + "name nja", + "type integer", + "reader urword", + "optional false", + ], + [ + "block dimensions", + "name nvert", + "type integer", + "reader urword", + "optional true", + ], + [ + "block griddata", + "name top", + "type double precision", + "shape (nodes)", + "reader readarray", + ], + [ + "block griddata", + "name bot", + "type double precision", + "shape (nodes)", + "reader readarray", + ], + [ + "block griddata", + "name area", + "type double precision", + "shape (nodes)", + "reader readarray", + ], + [ + "block griddata", + "name idomain", + "type integer", + "shape (nodes)", + "reader readarray", + "layered false", + "optional true", + ], + [ + "block connectiondata", + "name iac", + "type integer", + "shape (nodes)", + "reader readarray", + ], + [ + "block connectiondata", + "name ja", + "type integer", + "shape (nja)", + "reader readarray", + "numeric_index true", + "jagged_array iac", + ], + [ + "block connectiondata", + "name ihc", + "type integer", + "shape (nja)", + "reader readarray", + "jagged_array iac", + ], + [ + "block connectiondata", + "name cl12", + "type double precision", + "shape (nja)", + "reader readarray", + "jagged_array iac", + ], + [ + "block connectiondata", + "name hwva", + "type double precision", + "shape (nja)", + "reader readarray", + "jagged_array iac", + ], + [ + "block connectiondata", + "name angldegx", + "type double precision", + "optional true", + "shape (nja)", + "reader readarray", + "jagged_array iac", + ], + [ + "block vertices", + "name vertices", + "type recarray iv xv yv", + "shape (nvert)", + "reader urword", + "optional false", + ], + [ + "block vertices", + "name iv", + "type integer", + "in_record true", + "tagged false", + "reader urword", + "optional false", + "numeric_index true", + ], + [ + "block vertices", + "name xv", + "type double precision", + "in_record true", + "tagged false", + "reader urword", + "optional false", + ], + [ + "block vertices", + "name yv", + "type double precision", + "in_record true", + "tagged false", + "reader urword", + "optional false", + ], + [ + "block cell2d", + "name cell2d", + "type recarray icell2d xc yc ncvert icvert", + "shape (nodes)", + "reader urword", + "optional false", + ], + [ + "block cell2d", + "name icell2d", + "type integer", + "in_record true", + "tagged false", + "reader urword", + "optional false", + "numeric_index true", + ], + [ + "block cell2d", + "name xc", + "type double precision", + "in_record true", + "tagged false", + "reader urword", + "optional false", + ], + [ + "block cell2d", + "name yc", + "type double precision", + "in_record true", + "tagged false", + "reader urword", + "optional false", + ], + [ + "block cell2d", + "name ncvert", + "type integer", + "in_record true", + "tagged false", + "reader urword", + "optional false", + ], + [ + "block cell2d", + "name icvert", + "type integer", + "shape (ncvert)", + "in_record true", + "tagged false", + "reader urword", + "optional false", + "numeric_index true", + ], + ] + + def __init__( + self, + model, + loading_package=False, + length_units=None, + nogrb=None, + xorigin=None, + yorigin=None, + angrot=None, + vertical_offset_tolerance=0.0, + export_array_ascii=None, + nodes=None, + nja=None, + nvert=None, + top=None, + bot=None, + area=None, + idomain=None, + iac=None, + ja=None, + ihc=None, + cl12=None, + hwva=None, + angldegx=None, + vertices=None, + cell2d=None, + filename=None, + pname=None, + **kwargs, + ): + super().__init__( + model, "disu", filename, pname, loading_package, **kwargs + ) + + # set up variables + self.length_units = self.build_mfdata("length_units", length_units) + self.nogrb = self.build_mfdata("nogrb", nogrb) + self.xorigin = self.build_mfdata("xorigin", xorigin) + self.yorigin = self.build_mfdata("yorigin", yorigin) + self.angrot = self.build_mfdata("angrot", angrot) + self.vertical_offset_tolerance = self.build_mfdata( + "vertical_offset_tolerance", vertical_offset_tolerance + ) + self.export_array_ascii = self.build_mfdata( + "export_array_ascii", export_array_ascii + ) + self.nodes = self.build_mfdata("nodes", nodes) + self.nja = self.build_mfdata("nja", nja) + self.nvert = self.build_mfdata("nvert", nvert) + self.top = self.build_mfdata("top", top) + self.bot = self.build_mfdata("bot", bot) + self.area = self.build_mfdata("area", area) + self.idomain = self.build_mfdata("idomain", idomain) + self.iac = self.build_mfdata("iac", iac) + self.ja = self.build_mfdata("ja", ja) + self.ihc = self.build_mfdata("ihc", ihc) + self.cl12 = self.build_mfdata("cl12", cl12) + self.hwva = self.build_mfdata("hwva", hwva) + self.angldegx = self.build_mfdata("angldegx", angldegx) + self.vertices = self.build_mfdata("vertices", vertices) + self.cell2d = self.build_mfdata("cell2d", cell2d) + self._init_complete = True diff --git a/flopy/mf6/modflow/mfgwedisv.py b/flopy/mf6/modflow/mfgwedisv.py new file mode 100644 index 000000000..8824727b3 --- /dev/null +++ b/flopy/mf6/modflow/mfgwedisv.py @@ -0,0 +1,352 @@ +# DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY +# mf6/utils/createpackages.py +# FILE created on May 23, 2024 14:30:07 UTC +from .. import mfpackage +from ..data.mfdatautil import ArrayTemplateGenerator, ListTemplateGenerator + + +class ModflowGwedisv(mfpackage.MFPackage): + """ + ModflowGwedisv defines a disv package within a gwe6 model. + + Parameters + ---------- + model : MFModel + Model that this package is a part of. Package is automatically + added to model when it is initialized. + loading_package : bool + Do not set this parameter. It is intended for debugging and internal + processing purposes only. + length_units : string + * length_units (string) is the length units used for this model. Values + can be "FEET", "METERS", or "CENTIMETERS". If not specified, the + default is "UNKNOWN". + nogrb : boolean + * nogrb (boolean) keyword to deactivate writing of the binary grid + file. + xorigin : double + * xorigin (double) x-position of the origin used for model grid + vertices. This value should be provided in a real-world coordinate + system. A default value of zero is assigned if not specified. The + value for XORIGIN does not affect the model simulation, but it is + written to the binary grid file so that postprocessors can locate the + grid in space. + yorigin : double + * yorigin (double) y-position of the origin used for model grid + vertices. This value should be provided in a real-world coordinate + system. If not specified, then a default value equal to zero is used. + The value for YORIGIN does not affect the model simulation, but it is + written to the binary grid file so that postprocessors can locate the + grid in space. + angrot : double + * angrot (double) counter-clockwise rotation angle (in degrees) of the + model grid coordinate system relative to a real-world coordinate + system. If not specified, then a default value of 0.0 is assigned. + The value for ANGROT does not affect the model simulation, but it is + written to the binary grid file so that postprocessors can locate the + grid in space. + export_array_ascii : boolean + * export_array_ascii (boolean) keyword that specifies input griddata + arrays should be written to layered ascii output files. + nlay : integer + * nlay (integer) is the number of layers in the model grid. + ncpl : integer + * ncpl (integer) is the number of cells per layer. This is a constant + value for the grid and it applies to all layers. + nvert : integer + * nvert (integer) is the total number of (x, y) vertex pairs used to + characterize the horizontal configuration of the model grid. + top : [double] + * top (double) is the top elevation for each cell in the top model + layer. + botm : [double] + * botm (double) is the bottom elevation for each cell. + idomain : [integer] + * idomain (integer) is an optional array that characterizes the + existence status of a cell. If the IDOMAIN array is not specified, + then all model cells exist within the solution. If the IDOMAIN value + for a cell is 0, the cell does not exist in the simulation. Input and + output values will be read and written for the cell, but internal to + the program, the cell is excluded from the solution. If the IDOMAIN + value for a cell is 1, the cell exists in the simulation. If the + IDOMAIN value for a cell is -1, the cell does not exist in the + simulation. Furthermore, the first existing cell above will be + connected to the first existing cell below. This type of cell is + referred to as a "vertical pass through" cell. + vertices : [iv, xv, yv] + * iv (integer) is the vertex number. Records in the VERTICES block must + be listed in consecutive order from 1 to NVERT. This argument is an + index variable, which means that it should be treated as zero-based + when working with FloPy and Python. Flopy will automatically subtract + one when loading index variables and add one when writing index + variables. + * xv (double) is the x-coordinate for the vertex. + * yv (double) is the y-coordinate for the vertex. + cell2d : [icell2d, xc, yc, ncvert, icvert] + * icell2d (integer) is the CELL2D number. Records in the CELL2D block + must be listed in consecutive order from the first to the last. This + argument is an index variable, which means that it should be treated + as zero-based when working with FloPy and Python. Flopy will + automatically subtract one when loading index variables and add one + when writing index variables. + * xc (double) is the x-coordinate for the cell center. + * yc (double) is the y-coordinate for the cell center. + * ncvert (integer) is the number of vertices required to define the + cell. There may be a different number of vertices for each cell. + * icvert (integer) is an array of integer values containing vertex + numbers (in the VERTICES block) used to define the cell. Vertices + must be listed in clockwise order. Cells that are connected must + share vertices. This argument is an index variable, which means that + it should be treated as zero-based when working with FloPy and + Python. Flopy will automatically subtract one when loading index + variables and add one when writing index variables. + filename : String + File name for this package. + pname : String + Package name for this package. + parent_file : MFPackage + Parent package file that references this package. Only needed for + utility packages (mfutl*). For example, mfutllaktab package must have + a mfgwflak package parent_file. + + """ + + top = ArrayTemplateGenerator(("gwe6", "disv", "griddata", "top")) + botm = ArrayTemplateGenerator(("gwe6", "disv", "griddata", "botm")) + idomain = ArrayTemplateGenerator(("gwe6", "disv", "griddata", "idomain")) + vertices = ListTemplateGenerator(("gwe6", "disv", "vertices", "vertices")) + cell2d = ListTemplateGenerator(("gwe6", "disv", "cell2d", "cell2d")) + package_abbr = "gwedisv" + _package_type = "disv" + dfn_file_name = "gwe-disv.dfn" + + dfn = [ + [ + "header", + ], + [ + "block options", + "name length_units", + "type string", + "reader urword", + "optional true", + ], + [ + "block options", + "name nogrb", + "type keyword", + "reader urword", + "optional true", + ], + [ + "block options", + "name xorigin", + "type double precision", + "reader urword", + "optional true", + ], + [ + "block options", + "name yorigin", + "type double precision", + "reader urword", + "optional true", + ], + [ + "block options", + "name angrot", + "type double precision", + "reader urword", + "optional true", + ], + [ + "block options", + "name export_array_ascii", + "type keyword", + "reader urword", + "optional true", + "mf6internal export_ascii", + ], + [ + "block dimensions", + "name nlay", + "type integer", + "reader urword", + "optional false", + ], + [ + "block dimensions", + "name ncpl", + "type integer", + "reader urword", + "optional false", + ], + [ + "block dimensions", + "name nvert", + "type integer", + "reader urword", + "optional false", + ], + [ + "block griddata", + "name top", + "type double precision", + "shape (ncpl)", + "reader readarray", + ], + [ + "block griddata", + "name botm", + "type double precision", + "shape (ncpl, nlay)", + "reader readarray", + "layered true", + ], + [ + "block griddata", + "name idomain", + "type integer", + "shape (ncpl, nlay)", + "reader readarray", + "layered true", + "optional true", + ], + [ + "block vertices", + "name vertices", + "type recarray iv xv yv", + "shape (nvert)", + "reader urword", + "optional false", + ], + [ + "block vertices", + "name iv", + "type integer", + "in_record true", + "tagged false", + "reader urword", + "optional false", + "numeric_index true", + ], + [ + "block vertices", + "name xv", + "type double precision", + "in_record true", + "tagged false", + "reader urword", + "optional false", + ], + [ + "block vertices", + "name yv", + "type double precision", + "in_record true", + "tagged false", + "reader urword", + "optional false", + ], + [ + "block cell2d", + "name cell2d", + "type recarray icell2d xc yc ncvert icvert", + "shape (ncpl)", + "reader urword", + "optional false", + ], + [ + "block cell2d", + "name icell2d", + "type integer", + "in_record true", + "tagged false", + "reader urword", + "optional false", + "numeric_index true", + ], + [ + "block cell2d", + "name xc", + "type double precision", + "in_record true", + "tagged false", + "reader urword", + "optional false", + ], + [ + "block cell2d", + "name yc", + "type double precision", + "in_record true", + "tagged false", + "reader urword", + "optional false", + ], + [ + "block cell2d", + "name ncvert", + "type integer", + "in_record true", + "tagged false", + "reader urword", + "optional false", + ], + [ + "block cell2d", + "name icvert", + "type integer", + "shape (ncvert)", + "in_record true", + "tagged false", + "reader urword", + "optional false", + "numeric_index true", + ], + ] + + def __init__( + self, + model, + loading_package=False, + length_units=None, + nogrb=None, + xorigin=None, + yorigin=None, + angrot=None, + export_array_ascii=None, + nlay=None, + ncpl=None, + nvert=None, + top=None, + botm=None, + idomain=None, + vertices=None, + cell2d=None, + filename=None, + pname=None, + **kwargs, + ): + super().__init__( + model, "disv", filename, pname, loading_package, **kwargs + ) + + # set up variables + self.length_units = self.build_mfdata("length_units", length_units) + self.nogrb = self.build_mfdata("nogrb", nogrb) + self.xorigin = self.build_mfdata("xorigin", xorigin) + self.yorigin = self.build_mfdata("yorigin", yorigin) + self.angrot = self.build_mfdata("angrot", angrot) + self.export_array_ascii = self.build_mfdata( + "export_array_ascii", export_array_ascii + ) + self.nlay = self.build_mfdata("nlay", nlay) + self.ncpl = self.build_mfdata("ncpl", ncpl) + self.nvert = self.build_mfdata("nvert", nvert) + self.top = self.build_mfdata("top", top) + self.botm = self.build_mfdata("botm", botm) + self.idomain = self.build_mfdata("idomain", idomain) + self.vertices = self.build_mfdata("vertices", vertices) + self.cell2d = self.build_mfdata("cell2d", cell2d) + self._init_complete = True diff --git a/flopy/mf6/modflow/mfgweesl.py b/flopy/mf6/modflow/mfgweesl.py new file mode 100644 index 000000000..09f650242 --- /dev/null +++ b/flopy/mf6/modflow/mfgweesl.py @@ -0,0 +1,353 @@ +# DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY +# mf6/utils/createpackages.py +# FILE created on May 23, 2024 14:30:07 UTC +from .. import mfpackage +from ..data.mfdatautil import ListTemplateGenerator + + +class ModflowGweesl(mfpackage.MFPackage): + """ + ModflowGweesl defines a esl package within a gwe6 model. + + Parameters + ---------- + model : MFModel + Model that this package is a part of. Package is automatically + added to model when it is initialized. + loading_package : bool + Do not set this parameter. It is intended for debugging and internal + processing purposes only. + auxiliary : [string] + * auxiliary (string) defines an array of one or more auxiliary variable + names. There is no limit on the number of auxiliary variables that + can be provided on this line; however, lists of information provided + in subsequent blocks must have a column of data for each auxiliary + variable name defined here. The number of auxiliary variables + detected on this line determines the value for naux. Comments cannot + be provided anywhere on this line as they will be interpreted as + auxiliary variable names. Auxiliary variables may not be used by the + package, but they will be available for use by other parts of the + program. The program will terminate with an error if auxiliary + variables are specified on more than one line in the options block. + auxmultname : string + * auxmultname (string) name of auxiliary variable to be used as + multiplier of energy loading rate. + boundnames : boolean + * boundnames (boolean) keyword to indicate that boundary names may be + provided with the list of energy source loading cells. + print_input : boolean + * print_input (boolean) keyword to indicate that the list of energy + source loading information will be written to the listing file + immediately after it is read. + print_flows : boolean + * print_flows (boolean) keyword to indicate that the list of energy + source loading flow rates will be printed to the listing file for + every stress period time step in which "BUDGET PRINT" is specified in + Output Control. If there is no Output Control option and + "PRINT_FLOWS" is specified, then flow rates are printed for the last + time step of each stress period. + save_flows : boolean + * save_flows (boolean) keyword to indicate that energy source loading + flow terms will be written to the file specified with "BUDGET + FILEOUT" in Output Control. + timeseries : {varname:data} or timeseries data + * Contains data for the ts package. Data can be stored in a dictionary + containing data for the ts package with variable names as keys and + package data as values. Data just for the timeseries variable is also + acceptable. See ts package documentation for more information. + observations : {varname:data} or continuous data + * Contains data for the obs package. Data can be stored in a dictionary + containing data for the obs package with variable names as keys and + package data as values. Data just for the observations variable is + also acceptable. See obs package documentation for more information. + maxbound : integer + * maxbound (integer) integer value specifying the maximum number of + sources cells that will be specified for use during any stress + period. + stress_period_data : [cellid, senerrate, aux, boundname] + * cellid ((integer, ...)) is the cell identifier, and depends on the + type of grid that is used for the simulation. For a structured grid + that uses the DIS input file, CELLID is the layer, row, and column. + For a grid that uses the DISV input file, CELLID is the layer and + CELL2D number. If the model uses the unstructured discretization + (DISU) input file, CELLID is the node number for the cell. This + argument is an index variable, which means that it should be treated + as zero-based when working with FloPy and Python. Flopy will + automatically subtract one when loading index variables and add one + when writing index variables. + * senerrate (double) is the energy source loading rate. A positive + value indicates addition of energy and a negative value indicates + removal of energy. If the Options block includes a TIMESERIESFILE + entry (see the "Time-Variable Input" section), values can be obtained + from a time series by entering the time-series name in place of a + numeric value. + * aux (double) represents the values of the auxiliary variables for + each energy source. The values of auxiliary variables must be present + for each energy source. The values must be specified in the order of + the auxiliary variables specified in the OPTIONS block. If the + package supports time series and the Options block includes a + TIMESERIESFILE entry (see the "Time-Variable Input" section), values + can be obtained from a time series by entering the time-series name + in place of a numeric value. + * boundname (string) name of the energy source cell. BOUNDNAME is an + ASCII character variable that can contain as many as 40 characters. + If BOUNDNAME contains spaces in it, then the entire name must be + enclosed within single quotes. + filename : String + File name for this package. + pname : String + Package name for this package. + parent_file : MFPackage + Parent package file that references this package. Only needed for + utility packages (mfutl*). For example, mfutllaktab package must have + a mfgwflak package parent_file. + + """ + + auxiliary = ListTemplateGenerator(("gwe6", "esl", "options", "auxiliary")) + ts_filerecord = ListTemplateGenerator( + ("gwe6", "esl", "options", "ts_filerecord") + ) + obs_filerecord = ListTemplateGenerator( + ("gwe6", "esl", "options", "obs_filerecord") + ) + stress_period_data = ListTemplateGenerator( + ("gwe6", "esl", "period", "stress_period_data") + ) + package_abbr = "gweesl" + _package_type = "esl" + dfn_file_name = "gwe-esl.dfn" + + dfn = [ + [ + "header", + ], + [ + "block options", + "name auxiliary", + "type string", + "shape (naux)", + "reader urword", + "optional true", + ], + [ + "block options", + "name auxmultname", + "type string", + "shape", + "reader urword", + "optional true", + ], + [ + "block options", + "name boundnames", + "type keyword", + "shape", + "reader urword", + "optional true", + ], + [ + "block options", + "name print_input", + "type keyword", + "reader urword", + "optional true", + ], + [ + "block options", + "name print_flows", + "type keyword", + "reader urword", + "optional true", + ], + [ + "block options", + "name save_flows", + "type keyword", + "reader urword", + "optional true", + ], + [ + "block options", + "name ts_filerecord", + "type record ts6 filein ts6_filename", + "shape", + "reader urword", + "tagged true", + "optional true", + "construct_package ts", + "construct_data timeseries", + "parameter_name timeseries", + ], + [ + "block options", + "name ts6", + "type keyword", + "shape", + "in_record true", + "reader urword", + "tagged true", + "optional false", + ], + [ + "block options", + "name filein", + "type keyword", + "shape", + "in_record true", + "reader urword", + "tagged true", + "optional false", + ], + [ + "block options", + "name ts6_filename", + "type string", + "preserve_case true", + "in_record true", + "reader urword", + "optional false", + "tagged false", + ], + [ + "block options", + "name obs_filerecord", + "type record obs6 filein obs6_filename", + "shape", + "reader urword", + "tagged true", + "optional true", + "construct_package obs", + "construct_data continuous", + "parameter_name observations", + ], + [ + "block options", + "name obs6", + "type keyword", + "shape", + "in_record true", + "reader urword", + "tagged true", + "optional false", + ], + [ + "block options", + "name obs6_filename", + "type string", + "preserve_case true", + "in_record true", + "tagged false", + "reader urword", + "optional false", + ], + [ + "block dimensions", + "name maxbound", + "type integer", + "reader urword", + "optional false", + ], + [ + "block period", + "name iper", + "type integer", + "block_variable True", + "in_record true", + "tagged false", + "shape", + "valid", + "reader urword", + "optional false", + ], + [ + "block period", + "name stress_period_data", + "type recarray cellid senerrate aux boundname", + "shape (maxbound)", + "reader urword", + ], + [ + "block period", + "name cellid", + "type integer", + "shape (ncelldim)", + "tagged false", + "in_record true", + "reader urword", + ], + [ + "block period", + "name senerrate", + "type double precision", + "shape", + "tagged false", + "in_record true", + "reader urword", + "time_series true", + ], + [ + "block period", + "name aux", + "type double precision", + "in_record true", + "tagged false", + "shape (naux)", + "reader urword", + "optional true", + "time_series true", + ], + [ + "block period", + "name boundname", + "type string", + "shape", + "tagged false", + "in_record true", + "reader urword", + "optional true", + ], + ] + + def __init__( + self, + model, + loading_package=False, + auxiliary=None, + auxmultname=None, + boundnames=None, + print_input=None, + print_flows=None, + save_flows=None, + timeseries=None, + observations=None, + maxbound=None, + stress_period_data=None, + filename=None, + pname=None, + **kwargs, + ): + super().__init__( + model, "esl", filename, pname, loading_package, **kwargs + ) + + # set up variables + self.auxiliary = self.build_mfdata("auxiliary", auxiliary) + self.auxmultname = self.build_mfdata("auxmultname", auxmultname) + self.boundnames = self.build_mfdata("boundnames", boundnames) + self.print_input = self.build_mfdata("print_input", print_input) + self.print_flows = self.build_mfdata("print_flows", print_flows) + self.save_flows = self.build_mfdata("save_flows", save_flows) + self._ts_filerecord = self.build_mfdata("ts_filerecord", None) + self._ts_package = self.build_child_package( + "ts", timeseries, "timeseries", self._ts_filerecord + ) + self._obs_filerecord = self.build_mfdata("obs_filerecord", None) + self._obs_package = self.build_child_package( + "obs", observations, "continuous", self._obs_filerecord + ) + self.maxbound = self.build_mfdata("maxbound", maxbound) + self.stress_period_data = self.build_mfdata( + "stress_period_data", stress_period_data + ) + self._init_complete = True diff --git a/flopy/mf6/modflow/mfgweest.py b/flopy/mf6/modflow/mfgweest.py new file mode 100644 index 000000000..633605027 --- /dev/null +++ b/flopy/mf6/modflow/mfgweest.py @@ -0,0 +1,216 @@ +# DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY +# mf6/utils/createpackages.py +# FILE created on May 23, 2024 14:30:07 UTC +from .. import mfpackage +from ..data.mfdatautil import ArrayTemplateGenerator, ListTemplateGenerator + + +class ModflowGweest(mfpackage.MFPackage): + """ + ModflowGweest defines a est package within a gwe6 model. + + Parameters + ---------- + model : MFModel + Model that this package is a part of. Package is automatically + added to model when it is initialized. + loading_package : bool + Do not set this parameter. It is intended for debugging and internal + processing purposes only. + save_flows : boolean + * save_flows (boolean) keyword to indicate that EST flow terms will be + written to the file specified with "BUDGET FILEOUT" in Output + Control. + zero_order_decay : boolean + * zero_order_decay (boolean) is a text keyword to indicate that zero- + order decay will occur. Use of this keyword requires that DECAY and + DECAY_SORBED (if sorption is active) are specified in the GRIDDATA + block. + latent_heat_vaporization : boolean + * latent_heat_vaporization (boolean) is a text keyword to indicate that + cooling associated with evaporation will occur. Use of this keyword + requires that LATHEATVAP are specified in the GRIDDATA block. While + the EST package does not simulate evaporation, multiple other + packages in a GWE simulation may. For example, evaporation may occur + from the surface of streams or lakes. Owing to the energy consumed by + the change in phase, the latent heat of vaporization is required. + porosity : [double] + * porosity (double) is the mobile domain porosity, defined as the + mobile domain pore volume per mobile domain volume. The GWE model + does not support the concept of an immobile domain in the context of + heat transport. + decay : [double] + * decay (double) is the rate coefficient for zero-order decay for the + aqueous phase of the mobile domain. A negative value indicates heat + (energy) production. The dimensions of decay for zero-order decay is + energy per length cubed per time. Zero-order decay will have no + effect on simulation results unless zero-order decay is specified in + the options block. + cps : [double] + * cps (double) is the mass-based heat capacity of dry solids (aquifer + material). For example, units of J/kg/C may be used (or equivalent). + rhos : [double] + * rhos (double) is a user-specified value of the density of aquifer + material not considering the voids. Value will remain fixed for the + entire simulation. For example, if working in SI units, values may be + entered as kilograms per cubic meter. + packagedata : [cpw, rhow, latheatvap] + * cpw (double) is the mass-based heat capacity of the simulated fluid. + For example, units of J/kg/C may be used (or equivalent). + * rhow (double) is a user-specified value of the density of water. + Value will remain fixed for the entire simulation. For example, if + working in SI units, values may be entered as kilograms per cubic + meter. + * latheatvap (double) is the user-specified value for the latent heat + of vaporization. For example, if working in SI units, values may be + entered as kJ/kg. + filename : String + File name for this package. + pname : String + Package name for this package. + parent_file : MFPackage + Parent package file that references this package. Only needed for + utility packages (mfutl*). For example, mfutllaktab package must have + a mfgwflak package parent_file. + + """ + + porosity = ArrayTemplateGenerator(("gwe6", "est", "griddata", "porosity")) + decay = ArrayTemplateGenerator(("gwe6", "est", "griddata", "decay")) + cps = ArrayTemplateGenerator(("gwe6", "est", "griddata", "cps")) + rhos = ArrayTemplateGenerator(("gwe6", "est", "griddata", "rhos")) + packagedata = ListTemplateGenerator( + ("gwe6", "est", "packagedata", "packagedata") + ) + package_abbr = "gweest" + _package_type = "est" + dfn_file_name = "gwe-est.dfn" + + dfn = [ + [ + "header", + ], + [ + "block options", + "name save_flows", + "type keyword", + "reader urword", + "optional true", + ], + [ + "block options", + "name zero_order_decay", + "type keyword", + "reader urword", + "optional true", + ], + [ + "block options", + "name latent_heat_vaporization", + "type keyword", + "reader urword", + "optional true", + ], + [ + "block griddata", + "name porosity", + "type double precision", + "shape (nodes)", + "reader readarray", + "layered true", + ], + [ + "block griddata", + "name decay", + "type double precision", + "shape (nodes)", + "reader readarray", + "layered true", + "optional true", + ], + [ + "block griddata", + "name cps", + "type double precision", + "shape (nodes)", + "reader readarray", + "layered true", + ], + [ + "block griddata", + "name rhos", + "type double precision", + "shape (nodes)", + "reader readarray", + "layered true", + ], + [ + "block packagedata", + "name packagedata", + "type recarray cpw rhow latheatvap", + "shape", + "reader urword", + ], + [ + "block packagedata", + "name cpw", + "type double precision", + "shape", + "tagged false", + "in_record true", + "reader urword", + ], + [ + "block packagedata", + "name rhow", + "type double precision", + "shape", + "tagged false", + "in_record true", + "reader urword", + ], + [ + "block packagedata", + "name latheatvap", + "type double precision", + "shape", + "tagged false", + "in_record true", + "reader urword", + ], + ] + + def __init__( + self, + model, + loading_package=False, + save_flows=None, + zero_order_decay=None, + latent_heat_vaporization=None, + porosity=None, + decay=None, + cps=None, + rhos=None, + packagedata=None, + filename=None, + pname=None, + **kwargs, + ): + super().__init__( + model, "est", filename, pname, loading_package, **kwargs + ) + + # set up variables + self.save_flows = self.build_mfdata("save_flows", save_flows) + self.zero_order_decay = self.build_mfdata( + "zero_order_decay", zero_order_decay + ) + self.latent_heat_vaporization = self.build_mfdata( + "latent_heat_vaporization", latent_heat_vaporization + ) + self.porosity = self.build_mfdata("porosity", porosity) + self.decay = self.build_mfdata("decay", decay) + self.cps = self.build_mfdata("cps", cps) + self.rhos = self.build_mfdata("rhos", rhos) + self.packagedata = self.build_mfdata("packagedata", packagedata) + self._init_complete = True diff --git a/flopy/mf6/modflow/mfgwefmi.py b/flopy/mf6/modflow/mfgwefmi.py new file mode 100644 index 000000000..bea457970 --- /dev/null +++ b/flopy/mf6/modflow/mfgwefmi.py @@ -0,0 +1,137 @@ +# DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY +# mf6/utils/createpackages.py +# FILE created on May 23, 2024 14:30:07 UTC +from .. import mfpackage +from ..data.mfdatautil import ListTemplateGenerator + + +class ModflowGwefmi(mfpackage.MFPackage): + """ + ModflowGwefmi defines a fmi package within a gwe6 model. + + Parameters + ---------- + model : MFModel + Model that this package is a part of. Package is automatically + added to model when it is initialized. + loading_package : bool + Do not set this parameter. It is intended for debugging and internal + processing purposes only. + save_flows : boolean + * save_flows (boolean) keyword to indicate that FMI flow terms will be + written to the file specified with "BUDGET FILEOUT" in Output + Control. + flow_imbalance_correction : boolean + * flow_imbalance_correction (boolean) correct for an imbalance in flows + by assuming that any residual flow error comes in or leaves at the + temperature of the cell. When this option is activated, the GWE Model + budget written to the listing file will contain two additional + entries: FLOW-ERROR and FLOW-CORRECTION. These two entries will be + equal but opposite in sign. The FLOW-CORRECTION term is a mass flow + that is added to offset the error caused by an imprecise flow + balance. If these terms are not relatively small, the flow model + should be rerun with stricter convergence tolerances. + packagedata : [flowtype, fname] + * flowtype (string) is the word GWFBUDGET, GWFHEAD, GWFMOVER or the + name of an advanced GWF stress package. If GWFBUDGET is specified, + then the corresponding file must be a budget file from a previous GWF + Model run. If an advanced GWF stress package name appears then the + corresponding file must be the budget file saved by a LAK, SFR, MAW + or UZF Package. + * fname (string) is the name of the file containing flows. The path to + the file should be included if the file is not located in the folder + where the program was run. + filename : String + File name for this package. + pname : String + Package name for this package. + parent_file : MFPackage + Parent package file that references this package. Only needed for + utility packages (mfutl*). For example, mfutllaktab package must have + a mfgwflak package parent_file. + + """ + + packagedata = ListTemplateGenerator( + ("gwe6", "fmi", "packagedata", "packagedata") + ) + package_abbr = "gwefmi" + _package_type = "fmi" + dfn_file_name = "gwe-fmi.dfn" + + dfn = [ + [ + "header", + ], + [ + "block options", + "name save_flows", + "type keyword", + "reader urword", + "optional true", + ], + [ + "block options", + "name flow_imbalance_correction", + "type keyword", + "reader urword", + "optional true", + ], + [ + "block packagedata", + "name packagedata", + "type recarray flowtype filein fname", + "reader urword", + "optional false", + ], + [ + "block packagedata", + "name flowtype", + "in_record true", + "type string", + "tagged false", + "reader urword", + ], + [ + "block packagedata", + "name filein", + "type keyword", + "shape", + "in_record true", + "reader urword", + "tagged true", + "optional false", + ], + [ + "block packagedata", + "name fname", + "in_record true", + "type string", + "preserve_case true", + "tagged false", + "reader urword", + ], + ] + + def __init__( + self, + model, + loading_package=False, + save_flows=None, + flow_imbalance_correction=None, + packagedata=None, + filename=None, + pname=None, + **kwargs, + ): + super().__init__( + model, "fmi", filename, pname, loading_package, **kwargs + ) + + # set up variables + self.save_flows = self.build_mfdata("save_flows", save_flows) + self.flow_imbalance_correction = self.build_mfdata( + "flow_imbalance_correction", flow_imbalance_correction + ) + self.packagedata = self.build_mfdata("packagedata", packagedata) + self._init_complete = True diff --git a/flopy/mf6/modflow/mfgwegwe.py b/flopy/mf6/modflow/mfgwegwe.py new file mode 100644 index 000000000..675a866d0 --- /dev/null +++ b/flopy/mf6/modflow/mfgwegwe.py @@ -0,0 +1,493 @@ +# DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY +# mf6/utils/createpackages.py +# FILE created on May 23, 2024 14:30:07 UTC +from .. import mfpackage +from ..data.mfdatautil import ListTemplateGenerator + + +class ModflowGwegwe(mfpackage.MFPackage): + """ + ModflowGwegwe defines a gwegwe package. + + Parameters + ---------- + simulation : MFSimulation + Simulation that this package is a part of. Package is automatically + added to simulation when it is initialized. + loading_package : bool + Do not set this parameter. It is intended for debugging and internal + processing purposes only. + exgtype : + * is the exchange type (GWF-GWF or GWF-GWT). + exgmnamea : + * is the name of the first model that is part of this exchange. + exgmnameb : + * is the name of the second model that is part of this exchange. + gwfmodelname1 : string + * gwfmodelname1 (string) keyword to specify name of first corresponding + GWF Model. In the simulation name file, the GWE6-GWE6 entry contains + names for GWE Models (exgmnamea and exgmnameb). The GWE Model with + the name exgmnamea must correspond to the GWF Model with the name + gwfmodelname1. + gwfmodelname2 : string + * gwfmodelname2 (string) keyword to specify name of second + corresponding GWF Model. In the simulation name file, the GWE6-GWE6 + entry contains names for GWE Models (exgmnamea and exgmnameb). The + GWE Model with the name exgmnameb must correspond to the GWF Model + with the name gwfmodelname2. + auxiliary : [string] + * auxiliary (string) an array of auxiliary variable names. There is no + limit on the number of auxiliary variables that can be provided. Most + auxiliary variables will not be used by the GWF-GWF Exchange, but + they will be available for use by other parts of the program. If an + auxiliary variable with the name "ANGLDEGX" is found, then this + information will be used as the angle (provided in degrees) between + the connection face normal and the x axis, where a value of zero + indicates that a normal vector points directly along the positive x + axis. The connection face normal is a normal vector on the cell face + shared between the cell in model 1 and the cell in model 2 pointing + away from the model 1 cell. Additional information on "ANGLDEGX" is + provided in the description of the DISU Package. If an auxiliary + variable with the name "CDIST" is found, then this information will + be used as the straight-line connection distance, including the + vertical component, between the two cell centers. Both ANGLDEGX and + CDIST are required if specific discharge is calculated for either of + the groundwater models. + boundnames : boolean + * boundnames (boolean) keyword to indicate that boundary names may be + provided with the list of GWE Exchange cells. + print_input : boolean + * print_input (boolean) keyword to indicate that the list of exchange + entries will be echoed to the listing file immediately after it is + read. + print_flows : boolean + * print_flows (boolean) keyword to indicate that the list of exchange + flow rates will be printed to the listing file for every stress + period in which "SAVE BUDGET" is specified in Output Control. + save_flows : boolean + * save_flows (boolean) keyword to indicate that cell-by-cell flow terms + will be written to the budget file for each model provided that the + Output Control for the models are set up with the "BUDGET SAVE FILE" + option. + adv_scheme : string + * adv_scheme (string) scheme used to solve the advection term. Can be + upstream, central, or TVD. If not specified, upstream weighting is + the default weighting scheme. + cnd_xt3d_off : boolean + * cnd_xt3d_off (boolean) deactivate the xt3d method for the dispersive + flux and use the faster and less accurate approximation for this + exchange. + cnd_xt3d_rhs : boolean + * cnd_xt3d_rhs (boolean) add xt3d dispersion terms to right-hand side, + when possible, for this exchange. + filein : boolean + * filein (boolean) keyword to specify that an input filename is + expected next. + perioddata : {varname:data} or perioddata data + * Contains data for the mve package. Data can be stored in a dictionary + containing data for the mve package with variable names as keys and + package data as values. Data just for the perioddata variable is also + acceptable. See mve package documentation for more information. + observations : {varname:data} or continuous data + * Contains data for the obs package. Data can be stored in a dictionary + containing data for the obs package with variable names as keys and + package data as values. Data just for the observations variable is + also acceptable. See obs package documentation for more information. + dev_interfacemodel_on : boolean + * dev_interfacemodel_on (boolean) activates the interface model + mechanism for calculating the coefficients at (and possibly near) the + exchange. This keyword should only be used for development purposes. + nexg : integer + * nexg (integer) keyword and integer value specifying the number of + GWE-GWE exchanges. + exchangedata : [cellidm1, cellidm2, ihc, cl1, cl2, hwva, aux, boundname] + * cellidm1 ((integer, ...)) is the cellid of the cell in model 1 as + specified in the simulation name file. For a structured grid that + uses the DIS input file, CELLIDM1 is the layer, row, and column + numbers of the cell. For a grid that uses the DISV input file, + CELLIDM1 is the layer number and CELL2D number for the two cells. If + the model uses the unstructured discretization (DISU) input file, + then CELLIDM1 is the node number for the cell. This argument is an + index variable, which means that it should be treated as zero-based + when working with FloPy and Python. Flopy will automatically subtract + one when loading index variables and add one when writing index + variables. + * cellidm2 ((integer, ...)) is the cellid of the cell in model 2 as + specified in the simulation name file. For a structured grid that + uses the DIS input file, CELLIDM2 is the layer, row, and column + numbers of the cell. For a grid that uses the DISV input file, + CELLIDM2 is the layer number and CELL2D number for the two cells. If + the model uses the unstructured discretization (DISU) input file, + then CELLIDM2 is the node number for the cell. This argument is an + index variable, which means that it should be treated as zero-based + when working with FloPy and Python. Flopy will automatically subtract + one when loading index variables and add one when writing index + variables. + * ihc (integer) is an integer flag indicating the direction between + node n and all of its m connections. If IHC = 0 then the connection + is vertical. If IHC = 1 then the connection is horizontal. If IHC = 2 + then the connection is horizontal for a vertically staggered grid. + * cl1 (double) is the distance between the center of cell 1 and the its + shared face with cell 2. + * cl2 (double) is the distance between the center of cell 2 and the its + shared face with cell 1. + * hwva (double) is the horizontal width of the flow connection between + cell 1 and cell 2 if IHC > 0, or it is the area perpendicular to flow + of the vertical connection between cell 1 and cell 2 if IHC = 0. + * aux (double) represents the values of the auxiliary variables for + each GWEGWE Exchange. The values of auxiliary variables must be + present for each exchange. The values must be specified in the order + of the auxiliary variables specified in the OPTIONS block. + * boundname (string) name of the GWE Exchange cell. BOUNDNAME is an + ASCII character variable that can contain as many as 40 characters. + If BOUNDNAME contains spaces in it, then the entire name must be + enclosed within single quotes. + filename : String + File name for this package. + pname : String + Package name for this package. + parent_file : MFPackage + Parent package file that references this package. Only needed for + utility packages (mfutl*). For example, mfutllaktab package must have + a mfgwflak package parent_file. + + """ + + auxiliary = ListTemplateGenerator(("gwegwe", "options", "auxiliary")) + mve_filerecord = ListTemplateGenerator( + ("gwegwe", "options", "mve_filerecord") + ) + obs_filerecord = ListTemplateGenerator( + ("gwegwe", "options", "obs_filerecord") + ) + exchangedata = ListTemplateGenerator( + ("gwegwe", "exchangedata", "exchangedata") + ) + package_abbr = "gwegwe" + _package_type = "gwegwe" + dfn_file_name = "exg-gwegwe.dfn" + + dfn = [ + [ + "header", + "multi-package", + ], + [ + "block options", + "name gwfmodelname1", + "type string", + "reader urword", + "optional false", + ], + [ + "block options", + "name gwfmodelname2", + "type string", + "reader urword", + "optional false", + ], + [ + "block options", + "name auxiliary", + "type string", + "shape (naux)", + "reader urword", + "optional true", + ], + [ + "block options", + "name boundnames", + "type keyword", + "shape", + "reader urword", + "optional true", + ], + [ + "block options", + "name print_input", + "type keyword", + "reader urword", + "optional true", + "mf6internal iprpak", + ], + [ + "block options", + "name print_flows", + "type keyword", + "reader urword", + "optional true", + "mf6internal iprflow", + ], + [ + "block options", + "name save_flows", + "type keyword", + "reader urword", + "optional true", + "mf6internal ipakcb", + ], + [ + "block options", + "name adv_scheme", + "type string", + "valid upstream central tvd", + "reader urword", + "optional true", + ], + [ + "block options", + "name cnd_xt3d_off", + "type keyword", + "shape", + "reader urword", + "optional true", + ], + [ + "block options", + "name cnd_xt3d_rhs", + "type keyword", + "shape", + "reader urword", + "optional true", + ], + [ + "block options", + "name filein", + "type keyword", + "shape", + "in_record true", + "reader urword", + "tagged true", + "optional false", + ], + [ + "block options", + "name mve_filerecord", + "type record mve6 filein mve6_filename", + "shape", + "reader urword", + "tagged true", + "optional true", + "construct_package mve", + "construct_data perioddata", + "parameter_name perioddata", + ], + [ + "block options", + "name mve6", + "type keyword", + "shape", + "in_record true", + "reader urword", + "tagged true", + "optional false", + ], + [ + "block options", + "name mve6_filename", + "type string", + "preserve_case true", + "in_record true", + "tagged false", + "reader urword", + "optional false", + ], + [ + "block options", + "name obs_filerecord", + "type record obs6 filein obs6_filename", + "shape", + "reader urword", + "tagged true", + "optional true", + "construct_package obs", + "construct_data continuous", + "parameter_name observations", + ], + [ + "block options", + "name obs6", + "type keyword", + "shape", + "in_record true", + "reader urword", + "tagged true", + "optional false", + ], + [ + "block options", + "name obs6_filename", + "type string", + "preserve_case true", + "in_record true", + "tagged false", + "reader urword", + "optional false", + ], + [ + "block options", + "name dev_interfacemodel_on", + "type keyword", + "reader urword", + "optional true", + "mf6internal dev_ifmod_on", + ], + [ + "block dimensions", + "name nexg", + "type integer", + "reader urword", + "optional false", + ], + [ + "block exchangedata", + "name exchangedata", + "type recarray cellidm1 cellidm2 ihc cl1 cl2 hwva aux boundname", + "shape (nexg)", + "reader urword", + "optional false", + ], + [ + "block exchangedata", + "name cellidm1", + "type integer", + "in_record true", + "tagged false", + "reader urword", + "optional false", + "numeric_index true", + ], + [ + "block exchangedata", + "name cellidm2", + "type integer", + "in_record true", + "tagged false", + "reader urword", + "optional false", + "numeric_index true", + ], + [ + "block exchangedata", + "name ihc", + "type integer", + "in_record true", + "tagged false", + "reader urword", + "optional false", + ], + [ + "block exchangedata", + "name cl1", + "type double precision", + "in_record true", + "tagged false", + "reader urword", + "optional false", + ], + [ + "block exchangedata", + "name cl2", + "type double precision", + "in_record true", + "tagged false", + "reader urword", + "optional false", + ], + [ + "block exchangedata", + "name hwva", + "type double precision", + "in_record true", + "tagged false", + "reader urword", + "optional false", + ], + [ + "block exchangedata", + "name aux", + "type double precision", + "in_record true", + "tagged false", + "shape (naux)", + "reader urword", + "optional true", + "mf6internal auxvar", + ], + [ + "block exchangedata", + "name boundname", + "type string", + "shape", + "tagged false", + "in_record true", + "reader urword", + "optional true", + ], + ] + + def __init__( + self, + simulation, + loading_package=False, + exgtype="GWE6-GWE6", + exgmnamea=None, + exgmnameb=None, + gwfmodelname1=None, + gwfmodelname2=None, + auxiliary=None, + boundnames=None, + print_input=None, + print_flows=None, + save_flows=None, + adv_scheme=None, + cnd_xt3d_off=None, + cnd_xt3d_rhs=None, + filein=None, + perioddata=None, + observations=None, + dev_interfacemodel_on=None, + nexg=None, + exchangedata=None, + filename=None, + pname=None, + **kwargs, + ): + super().__init__( + simulation, "gwegwe", filename, pname, loading_package, **kwargs + ) + + # set up variables + self.exgtype = exgtype + + self.exgmnamea = exgmnamea + + self.exgmnameb = exgmnameb + + simulation.register_exchange_file(self) + + self.gwfmodelname1 = self.build_mfdata("gwfmodelname1", gwfmodelname1) + self.gwfmodelname2 = self.build_mfdata("gwfmodelname2", gwfmodelname2) + self.auxiliary = self.build_mfdata("auxiliary", auxiliary) + self.boundnames = self.build_mfdata("boundnames", boundnames) + self.print_input = self.build_mfdata("print_input", print_input) + self.print_flows = self.build_mfdata("print_flows", print_flows) + self.save_flows = self.build_mfdata("save_flows", save_flows) + self.adv_scheme = self.build_mfdata("adv_scheme", adv_scheme) + self.cnd_xt3d_off = self.build_mfdata("cnd_xt3d_off", cnd_xt3d_off) + self.cnd_xt3d_rhs = self.build_mfdata("cnd_xt3d_rhs", cnd_xt3d_rhs) + self.filein = self.build_mfdata("filein", filein) + self._mve_filerecord = self.build_mfdata("mve_filerecord", None) + self._mve_package = self.build_child_package( + "mve", perioddata, "perioddata", self._mve_filerecord + ) + self._obs_filerecord = self.build_mfdata("obs_filerecord", None) + self._obs_package = self.build_child_package( + "obs", observations, "continuous", self._obs_filerecord + ) + self.dev_interfacemodel_on = self.build_mfdata( + "dev_interfacemodel_on", dev_interfacemodel_on + ) + self.nexg = self.build_mfdata("nexg", nexg) + self.exchangedata = self.build_mfdata("exchangedata", exchangedata) + self._init_complete = True diff --git a/flopy/mf6/modflow/mfgweic.py b/flopy/mf6/modflow/mfgweic.py new file mode 100644 index 000000000..24fcfd4cb --- /dev/null +++ b/flopy/mf6/modflow/mfgweic.py @@ -0,0 +1,86 @@ +# DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY +# mf6/utils/createpackages.py +# FILE created on May 23, 2024 14:30:07 UTC +from .. import mfpackage +from ..data.mfdatautil import ArrayTemplateGenerator + + +class ModflowGweic(mfpackage.MFPackage): + """ + ModflowGweic defines a ic package within a gwe6 model. + + Parameters + ---------- + model : MFModel + Model that this package is a part of. Package is automatically + added to model when it is initialized. + loading_package : bool + Do not set this parameter. It is intended for debugging and internal + processing purposes only. + export_array_ascii : boolean + * export_array_ascii (boolean) keyword that specifies input griddata + arrays should be written to layered ascii output files. + strt : [double] + * strt (double) is the initial (starting) temperature---that is, the + temperature at the beginning of the GWE Model simulation. STRT must + be specified for all GWE Model simulations. One value is read for + every model cell. + filename : String + File name for this package. + pname : String + Package name for this package. + parent_file : MFPackage + Parent package file that references this package. Only needed for + utility packages (mfutl*). For example, mfutllaktab package must have + a mfgwflak package parent_file. + + """ + + strt = ArrayTemplateGenerator(("gwe6", "ic", "griddata", "strt")) + package_abbr = "gweic" + _package_type = "ic" + dfn_file_name = "gwe-ic.dfn" + + dfn = [ + [ + "header", + ], + [ + "block options", + "name export_array_ascii", + "type keyword", + "reader urword", + "optional true", + "mf6internal export_ascii", + ], + [ + "block griddata", + "name strt", + "type double precision", + "shape (nodes)", + "reader readarray", + "layered true", + "default_value 0.0", + ], + ] + + def __init__( + self, + model, + loading_package=False, + export_array_ascii=None, + strt=0.0, + filename=None, + pname=None, + **kwargs, + ): + super().__init__( + model, "ic", filename, pname, loading_package, **kwargs + ) + + # set up variables + self.export_array_ascii = self.build_mfdata( + "export_array_ascii", export_array_ascii + ) + self.strt = self.build_mfdata("strt", strt) + self._init_complete = True diff --git a/flopy/mf6/modflow/mfgwelke.py b/flopy/mf6/modflow/mfgwelke.py new file mode 100644 index 000000000..b0b96d659 --- /dev/null +++ b/flopy/mf6/modflow/mfgwelke.py @@ -0,0 +1,734 @@ +# DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY +# mf6/utils/createpackages.py +# FILE created on May 23, 2024 14:30:07 UTC +from .. import mfpackage +from ..data.mfdatautil import ListTemplateGenerator + + +class ModflowGwelke(mfpackage.MFPackage): + """ + ModflowGwelke defines a lke package within a gwe6 model. + + Parameters + ---------- + model : MFModel + Model that this package is a part of. Package is automatically + added to model when it is initialized. + loading_package : bool + Do not set this parameter. It is intended for debugging and internal + processing purposes only. + flow_package_name : string + * flow_package_name (string) keyword to specify the name of the + corresponding flow package. If not specified, then the corresponding + flow package must have the same name as this advanced transport + package (the name associated with this package in the GWE name file). + auxiliary : [string] + * auxiliary (string) defines an array of one or more auxiliary variable + names. There is no limit on the number of auxiliary variables that + can be provided on this line; however, lists of information provided + in subsequent blocks must have a column of data for each auxiliary + variable name defined here. The number of auxiliary variables + detected on this line determines the value for naux. Comments cannot + be provided anywhere on this line as they will be interpreted as + auxiliary variable names. Auxiliary variables may not be used by the + package, but they will be available for use by other parts of the + program. The program will terminate with an error if auxiliary + variables are specified on more than one line in the options block. + flow_package_auxiliary_name : string + * flow_package_auxiliary_name (string) keyword to specify the name of + an auxiliary variable in the corresponding flow package. If + specified, then the simulated temperatures from this advanced + transport package will be copied into the auxiliary variable + specified with this name. Note that the flow package must have an + auxiliary variable with this name or the program will terminate with + an error. If the flows for this advanced transport package are read + from a file, then this option will have no effect. + boundnames : boolean + * boundnames (boolean) keyword to indicate that boundary names may be + provided with the list of lake cells. + print_input : boolean + * print_input (boolean) keyword to indicate that the list of lake + information will be written to the listing file immediately after it + is read. + print_temperature : boolean + * print_temperature (boolean) keyword to indicate that the list of lake + temperature will be printed to the listing file for every stress + period in which "TEMPERATURE PRINT" is specified in Output Control. + If there is no Output Control option and PRINT_TEMPERATURE is + specified, then temperature are printed for the last time step of + each stress period. + print_flows : boolean + * print_flows (boolean) keyword to indicate that the list of lake flow + rates will be printed to the listing file for every stress period + time step in which "BUDGET PRINT" is specified in Output Control. If + there is no Output Control option and "PRINT_FLOWS" is specified, + then flow rates are printed for the last time step of each stress + period. + save_flows : boolean + * save_flows (boolean) keyword to indicate that lake flow terms will be + written to the file specified with "BUDGET FILEOUT" in Output + Control. + temperature_filerecord : [tempfile] + * tempfile (string) name of the binary output file to write temperature + information. + budget_filerecord : [budgetfile] + * budgetfile (string) name of the binary output file to write budget + information. + budgetcsv_filerecord : [budgetcsvfile] + * budgetcsvfile (string) name of the comma-separated value (CSV) output + file to write budget summary information. A budget summary record + will be written to this file for each time step of the simulation. + timeseries : {varname:data} or timeseries data + * Contains data for the ts package. Data can be stored in a dictionary + containing data for the ts package with variable names as keys and + package data as values. Data just for the timeseries variable is also + acceptable. See ts package documentation for more information. + observations : {varname:data} or continuous data + * Contains data for the obs package. Data can be stored in a dictionary + containing data for the obs package with variable names as keys and + package data as values. Data just for the observations variable is + also acceptable. See obs package documentation for more information. + packagedata : [lakeno, strt, ktf, rbthcnd, aux, boundname] + * lakeno (integer) integer value that defines the lake number + associated with the specified PACKAGEDATA data on the line. LAKENO + must be greater than zero and less than or equal to NLAKES. Lake + information must be specified for every lake or the program will + terminate with an error. The program will also terminate with an + error if information for a lake is specified more than once. This + argument is an index variable, which means that it should be treated + as zero-based when working with FloPy and Python. Flopy will + automatically subtract one when loading index variables and add one + when writing index variables. + * strt (double) real value that defines the starting temperature for + the lake. + * ktf (double) is the thermal conductivity of the of the interface + between the aquifer cell and the lake. + * rbthcnd (double) real value that defines the thickness of the lakebed + material through which conduction occurs. Must be greater than 0. + * aux (double) represents the values of the auxiliary variables for + each lake. The values of auxiliary variables must be present for each + lake. The values must be specified in the order of the auxiliary + variables specified in the OPTIONS block. If the package supports + time series and the Options block includes a TIMESERIESFILE entry + (see the "Time-Variable Input" section), values can be obtained from + a time series by entering the time-series name in place of a numeric + value. + * boundname (string) name of the lake cell. BOUNDNAME is an ASCII + character variable that can contain as many as 40 characters. If + BOUNDNAME contains spaces in it, then the entire name must be + enclosed within single quotes. + lakeperioddata : [lakeno, laksetting] + * lakeno (integer) integer value that defines the lake number + associated with the specified PERIOD data on the line. LAKENO must be + greater than zero and less than or equal to NLAKES. This argument is + an index variable, which means that it should be treated as zero- + based when working with FloPy and Python. Flopy will automatically + subtract one when loading index variables and add one when writing + index variables. + * laksetting (keystring) line of information that is parsed into a + keyword and values. Keyword values that can be used to start the + LAKSETTING string include: STATUS, TEMPERATURE, RAINFALL, + EVAPORATION, RUNOFF, and AUXILIARY. These settings are used to assign + the temperature associated with the corresponding flow terms. + Temperatures cannot be specified for all flow terms. For example, the + Lake Package supports a "WITHDRAWAL" flow term. If this withdrawal + term is active, then water will be withdrawn from the lake at the + calculated temperature of the lake. + status : [string] + * status (string) keyword option to define lake status. STATUS + can be ACTIVE, INACTIVE, or CONSTANT. By default, STATUS is + ACTIVE, which means that temperature will be calculated for + the lake. If a lake is inactive, then there will be no solute + mass fluxes into or out of the lake and the inactive value + will be written for the lake temperature. If a lake is + constant, then the temperature for the lake will be fixed at + the user specified value. + temperature : [string] + * temperature (string) real or character value that defines the + temperature for the lake. The specified TEMPERATURE is only + applied if the lake is a constant temperature lake. If the + Options block includes a TIMESERIESFILE entry (see the "Time- + Variable Input" section), values can be obtained from a time + series by entering the time-series name in place of a numeric + value. + rainfall : [string] + * rainfall (string) real or character value that defines the + rainfall temperature for the lake. If the Options block + includes a TIMESERIESFILE entry (see the "Time-Variable + Input" section), values can be obtained from a time series by + entering the time-series name in place of a numeric value. + evaporation : [string] + * evaporation (string) real or character value that defines the + temperature of evaporated water :math:`(^{\\circ}C)` for the + reach. If this temperature value is larger than the simulated + temperature in the reach, then the evaporated water will be + removed at the same temperature as the reach. If the Options + block includes a TIMESERIESFILE entry (see the "Time-Variable + Input" section), values can be obtained from a time series by + entering the time-series name in place of a numeric value. + runoff : [string] + * runoff (string) real or character value that defines the + temperature of runoff for the lake. Value must be greater + than or equal to zero. If the Options block includes a + TIMESERIESFILE entry (see the "Time-Variable Input" section), + values can be obtained from a time series by entering the + time-series name in place of a numeric value. + ext_inflow : [string] + * ext-inflow (string) real or character value that defines the + temperature of external inflow for the lake. Value must be + greater than or equal to zero. If the Options block includes + a TIMESERIESFILE entry (see the "Time-Variable Input" + section), values can be obtained from a time series by + entering the time-series name in place of a numeric value. + auxiliaryrecord : [auxname, auxval] + * auxname (string) name for the auxiliary variable to be + assigned AUXVAL. AUXNAME must match one of the auxiliary + variable names defined in the OPTIONS block. If AUXNAME does + not match one of the auxiliary variable names defined in the + OPTIONS block the data are ignored. + * auxval (double) value for the auxiliary variable. If the + Options block includes a TIMESERIESFILE entry (see the "Time- + Variable Input" section), values can be obtained from a time + series by entering the time-series name in place of a numeric + value. + filename : String + File name for this package. + pname : String + Package name for this package. + parent_file : MFPackage + Parent package file that references this package. Only needed for + utility packages (mfutl*). For example, mfutllaktab package must have + a mfgwflak package parent_file. + + """ + + auxiliary = ListTemplateGenerator(("gwe6", "lke", "options", "auxiliary")) + temperature_filerecord = ListTemplateGenerator( + ("gwe6", "lke", "options", "temperature_filerecord") + ) + budget_filerecord = ListTemplateGenerator( + ("gwe6", "lke", "options", "budget_filerecord") + ) + budgetcsv_filerecord = ListTemplateGenerator( + ("gwe6", "lke", "options", "budgetcsv_filerecord") + ) + ts_filerecord = ListTemplateGenerator( + ("gwe6", "lke", "options", "ts_filerecord") + ) + obs_filerecord = ListTemplateGenerator( + ("gwe6", "lke", "options", "obs_filerecord") + ) + packagedata = ListTemplateGenerator( + ("gwe6", "lke", "packagedata", "packagedata") + ) + lakeperioddata = ListTemplateGenerator( + ("gwe6", "lke", "period", "lakeperioddata") + ) + package_abbr = "gwelke" + _package_type = "lke" + dfn_file_name = "gwe-lke.dfn" + + dfn = [ + [ + "header", + "multi-package", + ], + [ + "block options", + "name flow_package_name", + "type string", + "shape", + "reader urword", + "optional true", + ], + [ + "block options", + "name auxiliary", + "type string", + "shape (naux)", + "reader urword", + "optional true", + ], + [ + "block options", + "name flow_package_auxiliary_name", + "type string", + "shape", + "reader urword", + "optional true", + ], + [ + "block options", + "name boundnames", + "type keyword", + "shape", + "reader urword", + "optional true", + ], + [ + "block options", + "name print_input", + "type keyword", + "reader urword", + "optional true", + ], + [ + "block options", + "name print_temperature", + "type keyword", + "reader urword", + "optional true", + ], + [ + "block options", + "name print_flows", + "type keyword", + "reader urword", + "optional true", + ], + [ + "block options", + "name save_flows", + "type keyword", + "reader urword", + "optional true", + ], + [ + "block options", + "name temperature_filerecord", + "type record temperature fileout tempfile", + "shape", + "reader urword", + "tagged true", + "optional true", + ], + [ + "block options", + "name temperature", + "type keyword", + "shape", + "in_record true", + "reader urword", + "tagged true", + "optional false", + ], + [ + "block options", + "name tempfile", + "type string", + "preserve_case true", + "shape", + "in_record true", + "reader urword", + "tagged false", + "optional false", + ], + [ + "block options", + "name budget_filerecord", + "type record budget fileout budgetfile", + "shape", + "reader urword", + "tagged true", + "optional true", + ], + [ + "block options", + "name budget", + "type keyword", + "shape", + "in_record true", + "reader urword", + "tagged true", + "optional false", + ], + [ + "block options", + "name fileout", + "type keyword", + "shape", + "in_record true", + "reader urword", + "tagged true", + "optional false", + ], + [ + "block options", + "name budgetfile", + "type string", + "preserve_case true", + "shape", + "in_record true", + "reader urword", + "tagged false", + "optional false", + ], + [ + "block options", + "name budgetcsv_filerecord", + "type record budgetcsv fileout budgetcsvfile", + "shape", + "reader urword", + "tagged true", + "optional true", + ], + [ + "block options", + "name budgetcsv", + "type keyword", + "shape", + "in_record true", + "reader urword", + "tagged true", + "optional false", + ], + [ + "block options", + "name budgetcsvfile", + "type string", + "preserve_case true", + "shape", + "in_record true", + "reader urword", + "tagged false", + "optional false", + ], + [ + "block options", + "name ts_filerecord", + "type record ts6 filein ts6_filename", + "shape", + "reader urword", + "tagged true", + "optional true", + "construct_package ts", + "construct_data timeseries", + "parameter_name timeseries", + ], + [ + "block options", + "name ts6", + "type keyword", + "shape", + "in_record true", + "reader urword", + "tagged true", + "optional false", + ], + [ + "block options", + "name filein", + "type keyword", + "shape", + "in_record true", + "reader urword", + "tagged true", + "optional false", + ], + [ + "block options", + "name ts6_filename", + "type string", + "preserve_case true", + "in_record true", + "reader urword", + "optional false", + "tagged false", + ], + [ + "block options", + "name obs_filerecord", + "type record obs6 filein obs6_filename", + "shape", + "reader urword", + "tagged true", + "optional true", + "construct_package obs", + "construct_data continuous", + "parameter_name observations", + ], + [ + "block options", + "name obs6", + "type keyword", + "shape", + "in_record true", + "reader urword", + "tagged true", + "optional false", + ], + [ + "block options", + "name obs6_filename", + "type string", + "preserve_case true", + "in_record true", + "tagged false", + "reader urword", + "optional false", + ], + [ + "block packagedata", + "name packagedata", + "type recarray lakeno strt ktf rbthcnd aux boundname", + "shape (maxbound)", + "reader urword", + ], + [ + "block packagedata", + "name lakeno", + "type integer", + "shape", + "tagged false", + "in_record true", + "reader urword", + "numeric_index true", + ], + [ + "block packagedata", + "name strt", + "type double precision", + "shape", + "tagged false", + "in_record true", + "reader urword", + ], + [ + "block packagedata", + "name ktf", + "type double precision", + "shape", + "tagged false", + "in_record true", + "reader urword", + ], + [ + "block packagedata", + "name rbthcnd", + "type double precision", + "shape", + "tagged false", + "in_record true", + "reader urword", + ], + [ + "block packagedata", + "name aux", + "type double precision", + "in_record true", + "tagged false", + "shape (naux)", + "reader urword", + "time_series true", + "optional true", + ], + [ + "block packagedata", + "name boundname", + "type string", + "shape", + "tagged false", + "in_record true", + "reader urword", + "optional true", + ], + [ + "block period", + "name iper", + "type integer", + "block_variable True", + "in_record true", + "tagged false", + "shape", + "valid", + "reader urword", + "optional false", + ], + [ + "block period", + "name lakeperioddata", + "type recarray lakeno laksetting", + "shape", + "reader urword", + ], + [ + "block period", + "name lakeno", + "type integer", + "shape", + "tagged false", + "in_record true", + "reader urword", + "numeric_index true", + ], + [ + "block period", + "name laksetting", + "type keystring status temperature rainfall evaporation runoff " + "ext-inflow auxiliaryrecord", + "shape", + "tagged false", + "in_record true", + "reader urword", + ], + [ + "block period", + "name status", + "type string", + "shape", + "tagged true", + "in_record true", + "reader urword", + ], + [ + "block period", + "name temperature", + "type string", + "shape", + "tagged true", + "in_record true", + "time_series true", + "reader urword", + ], + [ + "block period", + "name rainfall", + "type string", + "shape", + "tagged true", + "in_record true", + "reader urword", + "time_series true", + ], + [ + "block period", + "name evaporation", + "type string", + "shape", + "tagged true", + "in_record true", + "reader urword", + "time_series true", + ], + [ + "block period", + "name runoff", + "type string", + "shape", + "tagged true", + "in_record true", + "reader urword", + "time_series true", + ], + [ + "block period", + "name ext-inflow", + "type string", + "shape", + "tagged true", + "in_record true", + "reader urword", + "time_series true", + ], + [ + "block period", + "name auxiliaryrecord", + "type record auxiliary auxname auxval", + "shape", + "tagged", + "in_record true", + "reader urword", + ], + [ + "block period", + "name auxiliary", + "type keyword", + "shape", + "in_record true", + "reader urword", + ], + [ + "block period", + "name auxname", + "type string", + "shape", + "tagged false", + "in_record true", + "reader urword", + ], + [ + "block period", + "name auxval", + "type double precision", + "shape", + "tagged false", + "in_record true", + "reader urword", + "time_series true", + ], + ] + + def __init__( + self, + model, + loading_package=False, + flow_package_name=None, + auxiliary=None, + flow_package_auxiliary_name=None, + boundnames=None, + print_input=None, + print_temperature=None, + print_flows=None, + save_flows=None, + temperature_filerecord=None, + budget_filerecord=None, + budgetcsv_filerecord=None, + timeseries=None, + observations=None, + packagedata=None, + lakeperioddata=None, + filename=None, + pname=None, + **kwargs, + ): + super().__init__( + model, "lke", filename, pname, loading_package, **kwargs + ) + + # set up variables + self.flow_package_name = self.build_mfdata( + "flow_package_name", flow_package_name + ) + self.auxiliary = self.build_mfdata("auxiliary", auxiliary) + self.flow_package_auxiliary_name = self.build_mfdata( + "flow_package_auxiliary_name", flow_package_auxiliary_name + ) + self.boundnames = self.build_mfdata("boundnames", boundnames) + self.print_input = self.build_mfdata("print_input", print_input) + self.print_temperature = self.build_mfdata( + "print_temperature", print_temperature + ) + self.print_flows = self.build_mfdata("print_flows", print_flows) + self.save_flows = self.build_mfdata("save_flows", save_flows) + self.temperature_filerecord = self.build_mfdata( + "temperature_filerecord", temperature_filerecord + ) + self.budget_filerecord = self.build_mfdata( + "budget_filerecord", budget_filerecord + ) + self.budgetcsv_filerecord = self.build_mfdata( + "budgetcsv_filerecord", budgetcsv_filerecord + ) + self._ts_filerecord = self.build_mfdata("ts_filerecord", None) + self._ts_package = self.build_child_package( + "ts", timeseries, "timeseries", self._ts_filerecord + ) + self._obs_filerecord = self.build_mfdata("obs_filerecord", None) + self._obs_package = self.build_child_package( + "obs", observations, "continuous", self._obs_filerecord + ) + self.packagedata = self.build_mfdata("packagedata", packagedata) + self.lakeperioddata = self.build_mfdata( + "lakeperioddata", lakeperioddata + ) + self._init_complete = True diff --git a/flopy/mf6/modflow/mfgwemve.py b/flopy/mf6/modflow/mfgwemve.py new file mode 100644 index 000000000..e57ef4646 --- /dev/null +++ b/flopy/mf6/modflow/mfgwemve.py @@ -0,0 +1,256 @@ +# DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY +# mf6/utils/createpackages.py +# FILE created on May 23, 2024 14:30:07 UTC +from .. import mfpackage +from ..data.mfdatautil import ListTemplateGenerator + + +class ModflowGwemve(mfpackage.MFPackage): + """ + ModflowGwemve defines a mve package within a gwe6 model. + + Parameters + ---------- + parent_model_or_package : MFModel/MFPackage + Parent_model_or_package that this package is a part of. Package is automatically + added to parent_model_or_package when it is initialized. + loading_package : bool + Do not set this parameter. It is intended for debugging and internal + processing purposes only. + print_input : boolean + * print_input (boolean) keyword to indicate that the list of mover + information will be written to the listing file immediately after it + is read. + print_flows : boolean + * print_flows (boolean) keyword to indicate that the list of lake flow + rates will be printed to the listing file for every stress period + time step in which "BUDGET PRINT" is specified in Output Control. If + there is no Output Control option and "PRINT_FLOWS" is specified, + then flow rates are printed for the last time step of each stress + period. + save_flows : boolean + * save_flows (boolean) keyword to indicate that lake flow terms will be + written to the file specified with "BUDGET FILEOUT" in Output + Control. + budget_filerecord : [budgetfile] + * budgetfile (string) name of the binary output file to write budget + information. + budgetcsv_filerecord : [budgetcsvfile] + * budgetcsvfile (string) name of the comma-separated value (CSV) output + file to write budget summary information. A budget summary record + will be written to this file for each time step of the simulation. + filename : String + File name for this package. + pname : String + Package name for this package. + parent_file : MFPackage + Parent package file that references this package. Only needed for + utility packages (mfutl*). For example, mfutllaktab package must have + a mfgwflak package parent_file. + + """ + + budget_filerecord = ListTemplateGenerator( + ("gwe6", "mve", "options", "budget_filerecord") + ) + budgetcsv_filerecord = ListTemplateGenerator( + ("gwe6", "mve", "options", "budgetcsv_filerecord") + ) + package_abbr = "gwemve" + _package_type = "mve" + dfn_file_name = "gwe-mve.dfn" + + dfn = [ + [ + "header", + ], + [ + "block options", + "name print_input", + "type keyword", + "reader urword", + "optional true", + ], + [ + "block options", + "name print_flows", + "type keyword", + "reader urword", + "optional true", + ], + [ + "block options", + "name save_flows", + "type keyword", + "reader urword", + "optional true", + ], + [ + "block options", + "name budget_filerecord", + "type record budget fileout budgetfile", + "shape", + "reader urword", + "tagged true", + "optional true", + ], + [ + "block options", + "name budget", + "type keyword", + "shape", + "in_record true", + "reader urword", + "tagged true", + "optional false", + ], + [ + "block options", + "name fileout", + "type keyword", + "shape", + "in_record true", + "reader urword", + "tagged true", + "optional false", + ], + [ + "block options", + "name budgetfile", + "type string", + "preserve_case true", + "shape", + "in_record true", + "reader urword", + "tagged false", + "optional false", + ], + [ + "block options", + "name budgetcsv_filerecord", + "type record budgetcsv fileout budgetcsvfile", + "shape", + "reader urword", + "tagged true", + "optional true", + ], + [ + "block options", + "name budgetcsv", + "type keyword", + "shape", + "in_record true", + "reader urword", + "tagged true", + "optional false", + ], + [ + "block options", + "name budgetcsvfile", + "type string", + "preserve_case true", + "shape", + "in_record true", + "reader urword", + "tagged false", + "optional false", + ], + ] + + def __init__( + self, + parent_model_or_package, + loading_package=False, + print_input=None, + print_flows=None, + save_flows=None, + budget_filerecord=None, + budgetcsv_filerecord=None, + filename=None, + pname=None, + **kwargs, + ): + super().__init__( + parent_model_or_package, + "mve", + filename, + pname, + loading_package, + **kwargs, + ) + + # set up variables + self.print_input = self.build_mfdata("print_input", print_input) + self.print_flows = self.build_mfdata("print_flows", print_flows) + self.save_flows = self.build_mfdata("save_flows", save_flows) + self.budget_filerecord = self.build_mfdata( + "budget_filerecord", budget_filerecord + ) + self.budgetcsv_filerecord = self.build_mfdata( + "budgetcsv_filerecord", budgetcsv_filerecord + ) + self._init_complete = True + + +class GwemvePackages(mfpackage.MFChildPackages): + """ + GwemvePackages is a container class for the ModflowGwemve class. + + Methods + ---------- + initialize + Initializes a new ModflowGwemve package removing any sibling child + packages attached to the same parent package. See ModflowGwemve init + documentation for definition of parameters. + append_package + Adds a new ModflowGwemve package to the container. See ModflowGwemve + init documentation for definition of parameters. + """ + + package_abbr = "gwemvepackages" + + def initialize( + self, + print_input=None, + print_flows=None, + save_flows=None, + budget_filerecord=None, + budgetcsv_filerecord=None, + filename=None, + pname=None, + ): + new_package = ModflowGwemve( + self._cpparent, + print_input=print_input, + print_flows=print_flows, + save_flows=save_flows, + budget_filerecord=budget_filerecord, + budgetcsv_filerecord=budgetcsv_filerecord, + filename=filename, + pname=pname, + child_builder_call=True, + ) + self.init_package(new_package, filename) + + def append_package( + self, + print_input=None, + print_flows=None, + save_flows=None, + budget_filerecord=None, + budgetcsv_filerecord=None, + filename=None, + pname=None, + ): + new_package = ModflowGwemve( + self._cpparent, + print_input=print_input, + print_flows=print_flows, + save_flows=save_flows, + budget_filerecord=budget_filerecord, + budgetcsv_filerecord=budgetcsv_filerecord, + filename=filename, + pname=pname, + child_builder_call=True, + ) + self._append_package(new_package, filename) diff --git a/flopy/mf6/modflow/mfgwemwe.py b/flopy/mf6/modflow/mfgwemwe.py new file mode 100644 index 000000000..e38b85064 --- /dev/null +++ b/flopy/mf6/modflow/mfgwemwe.py @@ -0,0 +1,679 @@ +# DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY +# mf6/utils/createpackages.py +# FILE created on May 23, 2024 14:30:07 UTC +from .. import mfpackage +from ..data.mfdatautil import ListTemplateGenerator + + +class ModflowGwemwe(mfpackage.MFPackage): + """ + ModflowGwemwe defines a mwe package within a gwe6 model. + + Parameters + ---------- + model : MFModel + Model that this package is a part of. Package is automatically + added to model when it is initialized. + loading_package : bool + Do not set this parameter. It is intended for debugging and internal + processing purposes only. + flow_package_name : string + * flow_package_name (string) keyword to specify the name of the + corresponding flow package. If not specified, then the corresponding + flow package must have the same name as this advanced transport + package (the name associated with this package in the GWE name file). + auxiliary : [string] + * auxiliary (string) defines an array of one or more auxiliary variable + names. There is no limit on the number of auxiliary variables that + can be provided on this line; however, lists of information provided + in subsequent blocks must have a column of data for each auxiliary + variable name defined here. The number of auxiliary variables + detected on this line determines the value for naux. Comments cannot + be provided anywhere on this line as they will be interpreted as + auxiliary variable names. Auxiliary variables may not be used by the + package, but they will be available for use by other parts of the + program. The program will terminate with an error if auxiliary + variables are specified on more than one line in the options block. + flow_package_auxiliary_name : string + * flow_package_auxiliary_name (string) keyword to specify the name of + an auxiliary variable in the corresponding flow package. If + specified, then the simulated temperatures from this advanced + transport package will be copied into the auxiliary variable + specified with this name. Note that the flow package must have an + auxiliary variable with this name or the program will terminate with + an error. If the flows for this advanced transport package are read + from a file, then this option will have no effect. + boundnames : boolean + * boundnames (boolean) keyword to indicate that boundary names may be + provided with the list of well cells. + print_input : boolean + * print_input (boolean) keyword to indicate that the list of well + information will be written to the listing file immediately after it + is read. + print_temperature : boolean + * print_temperature (boolean) keyword to indicate that the list of well + temperature will be printed to the listing file for every stress + period in which "TEMPERATURE PRINT" is specified in Output Control. + If there is no Output Control option and PRINT_TEMPERATURE is + specified, then temperature are printed for the last time step of + each stress period. + print_flows : boolean + * print_flows (boolean) keyword to indicate that the list of well flow + rates will be printed to the listing file for every stress period + time step in which "BUDGET PRINT" is specified in Output Control. If + there is no Output Control option and "PRINT_FLOWS" is specified, + then flow rates are printed for the last time step of each stress + period. + save_flows : boolean + * save_flows (boolean) keyword to indicate that well flow terms will be + written to the file specified with "BUDGET FILEOUT" in Output + Control. + temperature_filerecord : [tempfile] + * tempfile (string) name of the binary output file to write temperature + information. + budget_filerecord : [budgetfile] + * budgetfile (string) name of the binary output file to write budget + information. + budgetcsv_filerecord : [budgetcsvfile] + * budgetcsvfile (string) name of the comma-separated value (CSV) output + file to write budget summary information. A budget summary record + will be written to this file for each time step of the simulation. + timeseries : {varname:data} or timeseries data + * Contains data for the ts package. Data can be stored in a dictionary + containing data for the ts package with variable names as keys and + package data as values. Data just for the timeseries variable is also + acceptable. See ts package documentation for more information. + observations : {varname:data} or continuous data + * Contains data for the obs package. Data can be stored in a dictionary + containing data for the obs package with variable names as keys and + package data as values. Data just for the observations variable is + also acceptable. See obs package documentation for more information. + packagedata : [mawno, strt, ktf, fthk, aux, boundname] + * mawno (integer) integer value that defines the well number associated + with the specified PACKAGEDATA data on the line. MAWNO must be + greater than zero and less than or equal to NMAWWELLS. Well + information must be specified for every well or the program will + terminate with an error. The program will also terminate with an + error if information for a well is specified more than once. This + argument is an index variable, which means that it should be treated + as zero-based when working with FloPy and Python. Flopy will + automatically subtract one when loading index variables and add one + when writing index variables. + * strt (double) real value that defines the starting temperature for + the well. + * ktf (double) is the thermal conductivity of the of the interface + between the aquifer cell and the feature. + * fthk (double) real value that defines the thickness of the material + through which conduction occurs. Must be greater than 0. + * aux (double) represents the values of the auxiliary variables for + each well. The values of auxiliary variables must be present for each + well. The values must be specified in the order of the auxiliary + variables specified in the OPTIONS block. If the package supports + time series and the Options block includes a TIMESERIESFILE entry + (see the "Time-Variable Input" section), values can be obtained from + a time series by entering the time-series name in place of a numeric + value. + * boundname (string) name of the well cell. BOUNDNAME is an ASCII + character variable that can contain as many as 40 characters. If + BOUNDNAME contains spaces in it, then the entire name must be + enclosed within single quotes. + mweperioddata : [mawno, mwesetting] + * mawno (integer) integer value that defines the well number associated + with the specified PERIOD data on the line. MAWNO must be greater + than zero and less than or equal to NMAWWELLS. This argument is an + index variable, which means that it should be treated as zero-based + when working with FloPy and Python. Flopy will automatically subtract + one when loading index variables and add one when writing index + variables. + * mwesetting (keystring) line of information that is parsed into a + keyword and values. Keyword values that can be used to start the + MWESETTING string include: STATUS, TEMPERATURE, RAINFALL, + EVAPORATION, RUNOFF, and AUXILIARY. These settings are used to assign + the temperature of associated with the corresponding flow terms. + Temperatures cannot be specified for all flow terms. For example, the + Multi-Aquifer Well Package supports a "WITHDRAWAL" flow term. If this + withdrawal term is active, then water will be withdrawn from the well + at the calculated temperature of the well. + status : [string] + * status (string) keyword option to define well status. STATUS + can be ACTIVE, INACTIVE, or CONSTANT. By default, STATUS is + ACTIVE, which means that temperature will be calculated for + the well. If a well is inactive, then there will be no solute + mass fluxes into or out of the well and the inactive value + will be written for the well temperature. If a well is + constant, then the temperature for the well will be fixed at + the user specified value. + temperature : [string] + * temperature (string) real or character value that defines the + temperature for the well. The specified TEMPERATURE is only + applied if the well is a constant temperature well. If the + Options block includes a TIMESERIESFILE entry (see the "Time- + Variable Input" section), values can be obtained from a time + series by entering the time-series name in place of a numeric + value. + rate : [string] + * rate (string) real or character value that defines the + injection solute temperature :math:`^{\\circ}C` for the well. + If the Options block includes a TIMESERIESFILE entry (see the + "Time-Variable Input" section), values can be obtained from a + time series by entering the time-series name in place of a + numeric value. + auxiliaryrecord : [auxname, auxval] + * auxname (string) name for the auxiliary variable to be + assigned AUXVAL. AUXNAME must match one of the auxiliary + variable names defined in the OPTIONS block. If AUXNAME does + not match one of the auxiliary variable names defined in the + OPTIONS block the data are ignored. + * auxval (double) value for the auxiliary variable. If the + Options block includes a TIMESERIESFILE entry (see the "Time- + Variable Input" section), values can be obtained from a time + series by entering the time-series name in place of a numeric + value. + filename : String + File name for this package. + pname : String + Package name for this package. + parent_file : MFPackage + Parent package file that references this package. Only needed for + utility packages (mfutl*). For example, mfutllaktab package must have + a mfgwflak package parent_file. + + """ + + auxiliary = ListTemplateGenerator(("gwe6", "mwe", "options", "auxiliary")) + temperature_filerecord = ListTemplateGenerator( + ("gwe6", "mwe", "options", "temperature_filerecord") + ) + budget_filerecord = ListTemplateGenerator( + ("gwe6", "mwe", "options", "budget_filerecord") + ) + budgetcsv_filerecord = ListTemplateGenerator( + ("gwe6", "mwe", "options", "budgetcsv_filerecord") + ) + ts_filerecord = ListTemplateGenerator( + ("gwe6", "mwe", "options", "ts_filerecord") + ) + obs_filerecord = ListTemplateGenerator( + ("gwe6", "mwe", "options", "obs_filerecord") + ) + packagedata = ListTemplateGenerator( + ("gwe6", "mwe", "packagedata", "packagedata") + ) + mweperioddata = ListTemplateGenerator( + ("gwe6", "mwe", "period", "mweperioddata") + ) + package_abbr = "gwemwe" + _package_type = "mwe" + dfn_file_name = "gwe-mwe.dfn" + + dfn = [ + [ + "header", + "multi-package", + ], + [ + "block options", + "name flow_package_name", + "type string", + "shape", + "reader urword", + "optional true", + ], + [ + "block options", + "name auxiliary", + "type string", + "shape (naux)", + "reader urword", + "optional true", + ], + [ + "block options", + "name flow_package_auxiliary_name", + "type string", + "shape", + "reader urword", + "optional true", + ], + [ + "block options", + "name boundnames", + "type keyword", + "shape", + "reader urword", + "optional true", + ], + [ + "block options", + "name print_input", + "type keyword", + "reader urword", + "optional true", + ], + [ + "block options", + "name print_temperature", + "type keyword", + "reader urword", + "optional true", + ], + [ + "block options", + "name print_flows", + "type keyword", + "reader urword", + "optional true", + ], + [ + "block options", + "name save_flows", + "type keyword", + "reader urword", + "optional true", + ], + [ + "block options", + "name temperature_filerecord", + "type record temperature fileout tempfile", + "shape", + "reader urword", + "tagged true", + "optional true", + ], + [ + "block options", + "name temperature", + "type keyword", + "shape", + "in_record true", + "reader urword", + "tagged true", + "optional false", + ], + [ + "block options", + "name tempfile", + "type string", + "preserve_case true", + "shape", + "in_record true", + "reader urword", + "tagged false", + "optional false", + ], + [ + "block options", + "name budget_filerecord", + "type record budget fileout budgetfile", + "shape", + "reader urword", + "tagged true", + "optional true", + ], + [ + "block options", + "name budget", + "type keyword", + "shape", + "in_record true", + "reader urword", + "tagged true", + "optional false", + ], + [ + "block options", + "name fileout", + "type keyword", + "shape", + "in_record true", + "reader urword", + "tagged true", + "optional false", + ], + [ + "block options", + "name budgetfile", + "type string", + "preserve_case true", + "shape", + "in_record true", + "reader urword", + "tagged false", + "optional false", + ], + [ + "block options", + "name budgetcsv_filerecord", + "type record budgetcsv fileout budgetcsvfile", + "shape", + "reader urword", + "tagged true", + "optional true", + ], + [ + "block options", + "name budgetcsv", + "type keyword", + "shape", + "in_record true", + "reader urword", + "tagged true", + "optional false", + ], + [ + "block options", + "name budgetcsvfile", + "type string", + "preserve_case true", + "shape", + "in_record true", + "reader urword", + "tagged false", + "optional false", + ], + [ + "block options", + "name ts_filerecord", + "type record ts6 filein ts6_filename", + "shape", + "reader urword", + "tagged true", + "optional true", + "construct_package ts", + "construct_data timeseries", + "parameter_name timeseries", + ], + [ + "block options", + "name ts6", + "type keyword", + "shape", + "in_record true", + "reader urword", + "tagged true", + "optional false", + ], + [ + "block options", + "name filein", + "type keyword", + "shape", + "in_record true", + "reader urword", + "tagged true", + "optional false", + ], + [ + "block options", + "name ts6_filename", + "type string", + "preserve_case true", + "in_record true", + "reader urword", + "optional false", + "tagged false", + ], + [ + "block options", + "name obs_filerecord", + "type record obs6 filein obs6_filename", + "shape", + "reader urword", + "tagged true", + "optional true", + "construct_package obs", + "construct_data continuous", + "parameter_name observations", + ], + [ + "block options", + "name obs6", + "type keyword", + "shape", + "in_record true", + "reader urword", + "tagged true", + "optional false", + ], + [ + "block options", + "name obs6_filename", + "type string", + "preserve_case true", + "in_record true", + "tagged false", + "reader urword", + "optional false", + ], + [ + "block packagedata", + "name packagedata", + "type recarray mawno strt ktf fthk aux boundname", + "shape (maxbound)", + "reader urword", + ], + [ + "block packagedata", + "name mawno", + "type integer", + "shape", + "tagged false", + "in_record true", + "reader urword", + "numeric_index true", + ], + [ + "block packagedata", + "name strt", + "type double precision", + "shape", + "tagged false", + "in_record true", + "reader urword", + ], + [ + "block packagedata", + "name ktf", + "type double precision", + "shape", + "tagged false", + "in_record true", + "reader urword", + ], + [ + "block packagedata", + "name fthk", + "type double precision", + "shape", + "tagged false", + "in_record true", + "reader urword", + ], + [ + "block packagedata", + "name aux", + "type double precision", + "in_record true", + "tagged false", + "shape (naux)", + "reader urword", + "time_series true", + "optional true", + ], + [ + "block packagedata", + "name boundname", + "type string", + "shape", + "tagged false", + "in_record true", + "reader urword", + "optional true", + ], + [ + "block period", + "name iper", + "type integer", + "block_variable True", + "in_record true", + "tagged false", + "shape", + "valid", + "reader urword", + "optional false", + ], + [ + "block period", + "name mweperioddata", + "type recarray mawno mwesetting", + "shape", + "reader urword", + ], + [ + "block period", + "name mawno", + "type integer", + "shape", + "tagged false", + "in_record true", + "reader urword", + "numeric_index true", + ], + [ + "block period", + "name mwesetting", + "type keystring status temperature rate auxiliaryrecord", + "shape", + "tagged false", + "in_record true", + "reader urword", + ], + [ + "block period", + "name status", + "type string", + "shape", + "tagged true", + "in_record true", + "reader urword", + ], + [ + "block period", + "name temperature", + "type string", + "shape", + "tagged true", + "in_record true", + "time_series true", + "reader urword", + ], + [ + "block period", + "name rate", + "type string", + "shape", + "tagged true", + "in_record true", + "reader urword", + "time_series true", + ], + [ + "block period", + "name auxiliaryrecord", + "type record auxiliary auxname auxval", + "shape", + "tagged", + "in_record true", + "reader urword", + ], + [ + "block period", + "name auxiliary", + "type keyword", + "shape", + "in_record true", + "reader urword", + ], + [ + "block period", + "name auxname", + "type string", + "shape", + "tagged false", + "in_record true", + "reader urword", + ], + [ + "block period", + "name auxval", + "type double precision", + "shape", + "tagged false", + "in_record true", + "reader urword", + "time_series true", + ], + ] + + def __init__( + self, + model, + loading_package=False, + flow_package_name=None, + auxiliary=None, + flow_package_auxiliary_name=None, + boundnames=None, + print_input=None, + print_temperature=None, + print_flows=None, + save_flows=None, + temperature_filerecord=None, + budget_filerecord=None, + budgetcsv_filerecord=None, + timeseries=None, + observations=None, + packagedata=None, + mweperioddata=None, + filename=None, + pname=None, + **kwargs, + ): + super().__init__( + model, "mwe", filename, pname, loading_package, **kwargs + ) + + # set up variables + self.flow_package_name = self.build_mfdata( + "flow_package_name", flow_package_name + ) + self.auxiliary = self.build_mfdata("auxiliary", auxiliary) + self.flow_package_auxiliary_name = self.build_mfdata( + "flow_package_auxiliary_name", flow_package_auxiliary_name + ) + self.boundnames = self.build_mfdata("boundnames", boundnames) + self.print_input = self.build_mfdata("print_input", print_input) + self.print_temperature = self.build_mfdata( + "print_temperature", print_temperature + ) + self.print_flows = self.build_mfdata("print_flows", print_flows) + self.save_flows = self.build_mfdata("save_flows", save_flows) + self.temperature_filerecord = self.build_mfdata( + "temperature_filerecord", temperature_filerecord + ) + self.budget_filerecord = self.build_mfdata( + "budget_filerecord", budget_filerecord + ) + self.budgetcsv_filerecord = self.build_mfdata( + "budgetcsv_filerecord", budgetcsv_filerecord + ) + self._ts_filerecord = self.build_mfdata("ts_filerecord", None) + self._ts_package = self.build_child_package( + "ts", timeseries, "timeseries", self._ts_filerecord + ) + self._obs_filerecord = self.build_mfdata("obs_filerecord", None) + self._obs_package = self.build_child_package( + "obs", observations, "continuous", self._obs_filerecord + ) + self.packagedata = self.build_mfdata("packagedata", packagedata) + self.mweperioddata = self.build_mfdata("mweperioddata", mweperioddata) + self._init_complete = True diff --git a/flopy/mf6/modflow/mfgwenam.py b/flopy/mf6/modflow/mfgwenam.py new file mode 100644 index 000000000..a012c6d9c --- /dev/null +++ b/flopy/mf6/modflow/mfgwenam.py @@ -0,0 +1,164 @@ +# DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY +# mf6/utils/createpackages.py +# FILE created on May 23, 2024 14:30:07 UTC +from .. import mfpackage +from ..data.mfdatautil import ListTemplateGenerator + + +class ModflowGwenam(mfpackage.MFPackage): + """ + ModflowGwenam defines a nam package within a gwe6 model. + + Parameters + ---------- + model : MFModel + Model that this package is a part of. Package is automatically + added to model when it is initialized. + loading_package : bool + Do not set this parameter. It is intended for debugging and internal + processing purposes only. + list : string + * list (string) is name of the listing file to create for this GWE + model. If not specified, then the name of the list file will be the + basename of the GWE model name file and the ".lst" extension. For + example, if the GWE name file is called "my.model.nam" then the list + file will be called "my.model.lst". + print_input : boolean + * print_input (boolean) keyword to indicate that the list of all model + stress package information will be written to the listing file + immediately after it is read. + print_flows : boolean + * print_flows (boolean) keyword to indicate that the list of all model + package flow rates will be printed to the listing file for every + stress period time step in which "BUDGET PRINT" is specified in + Output Control. If there is no Output Control option and + "PRINT_FLOWS" is specified, then flow rates are printed for the last + time step of each stress period. + save_flows : boolean + * save_flows (boolean) keyword to indicate that all model package flow + terms will be written to the file specified with "BUDGET FILEOUT" in + Output Control. + packages : [ftype, fname, pname] + * ftype (string) is the file type, which must be one of the following + character values shown in table ref{table:ftype-gwe}. Ftype may be + entered in any combination of uppercase and lowercase. + * fname (string) is the name of the file containing the package input. + The path to the file should be included if the file is not located in + the folder where the program was run. + * pname (string) is the user-defined name for the package. PNAME is + restricted to 16 characters. No spaces are allowed in PNAME. PNAME + character values are read and stored by the program for stress + packages only. These names may be useful for labeling purposes when + multiple stress packages of the same type are located within a single + GWE Model. If PNAME is specified for a stress package, then PNAME + will be used in the flow budget table in the listing file; it will + also be used for the text entry in the cell-by-cell budget file. + PNAME is case insensitive and is stored in all upper case letters. + filename : String + File name for this package. + pname : String + Package name for this package. + parent_file : MFPackage + Parent package file that references this package. Only needed for + utility packages (mfutl*). For example, mfutllaktab package must have + a mfgwflak package parent_file. + + """ + + packages = ListTemplateGenerator(("gwe6", "nam", "packages", "packages")) + package_abbr = "gwenam" + _package_type = "nam" + dfn_file_name = "gwe-nam.dfn" + + dfn = [ + [ + "header", + ], + [ + "block options", + "name list", + "type string", + "reader urword", + "optional true", + "preserve_case true", + ], + [ + "block options", + "name print_input", + "type keyword", + "reader urword", + "optional true", + ], + [ + "block options", + "name print_flows", + "type keyword", + "reader urword", + "optional true", + ], + [ + "block options", + "name save_flows", + "type keyword", + "reader urword", + "optional true", + ], + [ + "block packages", + "name packages", + "type recarray ftype fname pname", + "reader urword", + "optional false", + ], + [ + "block packages", + "name ftype", + "in_record true", + "type string", + "tagged false", + "reader urword", + ], + [ + "block packages", + "name fname", + "in_record true", + "type string", + "preserve_case true", + "tagged false", + "reader urword", + ], + [ + "block packages", + "name pname", + "in_record true", + "type string", + "tagged false", + "reader urword", + "optional true", + ], + ] + + def __init__( + self, + model, + loading_package=False, + list=None, + print_input=None, + print_flows=None, + save_flows=None, + packages=None, + filename=None, + pname=None, + **kwargs, + ): + super().__init__( + model, "nam", filename, pname, loading_package, **kwargs + ) + + # set up variables + self.list = self.build_mfdata("list", list) + self.print_input = self.build_mfdata("print_input", print_input) + self.print_flows = self.build_mfdata("print_flows", print_flows) + self.save_flows = self.build_mfdata("save_flows", save_flows) + self.packages = self.build_mfdata("packages", packages) + self._init_complete = True diff --git a/flopy/mf6/modflow/mfgweoc.py b/flopy/mf6/modflow/mfgweoc.py new file mode 100644 index 000000000..f188f4b29 --- /dev/null +++ b/flopy/mf6/modflow/mfgweoc.py @@ -0,0 +1,433 @@ +# DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY +# mf6/utils/createpackages.py +# FILE created on May 23, 2024 14:30:07 UTC +from .. import mfpackage +from ..data.mfdatautil import ListTemplateGenerator + + +class ModflowGweoc(mfpackage.MFPackage): + """ + ModflowGweoc defines a oc package within a gwe6 model. + + Parameters + ---------- + model : MFModel + Model that this package is a part of. Package is automatically + added to model when it is initialized. + loading_package : bool + Do not set this parameter. It is intended for debugging and internal + processing purposes only. + budget_filerecord : [budgetfile] + * budgetfile (string) name of the output file to write budget + information. + budgetcsv_filerecord : [budgetcsvfile] + * budgetcsvfile (string) name of the comma-separated value (CSV) output + file to write budget summary information. A budget summary record + will be written to this file for each time step of the simulation. + temperature_filerecord : [temperaturefile] + * temperaturefile (string) name of the output file to write temperature + information. + temperatureprintrecord : [columns, width, digits, format] + * columns (integer) number of columns for writing data. + * width (integer) width for writing each number. + * digits (integer) number of digits to use for writing a number. + * format (string) write format can be EXPONENTIAL, FIXED, GENERAL, or + SCIENTIFIC. + saverecord : [rtype, ocsetting] + * rtype (string) type of information to save or print. Can be BUDGET or + TEMPERATURE. + * ocsetting (keystring) specifies the steps for which the data will be + saved. + all : [keyword] + * all (keyword) keyword to indicate save for all time steps in + period. + first : [keyword] + * first (keyword) keyword to indicate save for first step in + period. This keyword may be used in conjunction with other + keywords to print or save results for multiple time steps. + last : [keyword] + * last (keyword) keyword to indicate save for last step in + period. This keyword may be used in conjunction with other + keywords to print or save results for multiple time steps. + frequency : [integer] + * frequency (integer) save at the specified time step + frequency. This keyword may be used in conjunction with other + keywords to print or save results for multiple time steps. + steps : [integer] + * steps (integer) save for each step specified in STEPS. This + keyword may be used in conjunction with other keywords to + print or save results for multiple time steps. + printrecord : [rtype, ocsetting] + * rtype (string) type of information to save or print. Can be BUDGET or + TEMPERATURE. + * ocsetting (keystring) specifies the steps for which the data will be + saved. + all : [keyword] + * all (keyword) keyword to indicate save for all time steps in + period. + first : [keyword] + * first (keyword) keyword to indicate save for first step in + period. This keyword may be used in conjunction with other + keywords to print or save results for multiple time steps. + last : [keyword] + * last (keyword) keyword to indicate save for last step in + period. This keyword may be used in conjunction with other + keywords to print or save results for multiple time steps. + frequency : [integer] + * frequency (integer) save at the specified time step + frequency. This keyword may be used in conjunction with other + keywords to print or save results for multiple time steps. + steps : [integer] + * steps (integer) save for each step specified in STEPS. This + keyword may be used in conjunction with other keywords to + print or save results for multiple time steps. + filename : String + File name for this package. + pname : String + Package name for this package. + parent_file : MFPackage + Parent package file that references this package. Only needed for + utility packages (mfutl*). For example, mfutllaktab package must have + a mfgwflak package parent_file. + + """ + + budget_filerecord = ListTemplateGenerator( + ("gwe6", "oc", "options", "budget_filerecord") + ) + budgetcsv_filerecord = ListTemplateGenerator( + ("gwe6", "oc", "options", "budgetcsv_filerecord") + ) + temperature_filerecord = ListTemplateGenerator( + ("gwe6", "oc", "options", "temperature_filerecord") + ) + temperatureprintrecord = ListTemplateGenerator( + ("gwe6", "oc", "options", "temperatureprintrecord") + ) + saverecord = ListTemplateGenerator(("gwe6", "oc", "period", "saverecord")) + printrecord = ListTemplateGenerator( + ("gwe6", "oc", "period", "printrecord") + ) + package_abbr = "gweoc" + _package_type = "oc" + dfn_file_name = "gwe-oc.dfn" + + dfn = [ + [ + "header", + ], + [ + "block options", + "name budget_filerecord", + "type record budget fileout budgetfile", + "shape", + "reader urword", + "tagged true", + "optional true", + ], + [ + "block options", + "name budget", + "type keyword", + "shape", + "in_record true", + "reader urword", + "tagged true", + "optional false", + ], + [ + "block options", + "name fileout", + "type keyword", + "shape", + "in_record true", + "reader urword", + "tagged true", + "optional false", + ], + [ + "block options", + "name budgetfile", + "type string", + "preserve_case true", + "shape", + "in_record true", + "reader urword", + "tagged false", + "optional false", + ], + [ + "block options", + "name budgetcsv_filerecord", + "type record budgetcsv fileout budgetcsvfile", + "shape", + "reader urword", + "tagged true", + "optional true", + ], + [ + "block options", + "name budgetcsv", + "type keyword", + "shape", + "in_record true", + "reader urword", + "tagged true", + "optional false", + ], + [ + "block options", + "name budgetcsvfile", + "type string", + "preserve_case true", + "shape", + "in_record true", + "reader urword", + "tagged false", + "optional false", + ], + [ + "block options", + "name temperature_filerecord", + "type record temperature fileout temperaturefile", + "shape", + "reader urword", + "tagged true", + "optional true", + ], + [ + "block options", + "name temperature", + "type keyword", + "shape", + "in_record true", + "reader urword", + "tagged true", + "optional false", + ], + [ + "block options", + "name temperaturefile", + "type string", + "preserve_case true", + "shape", + "in_record true", + "reader urword", + "tagged false", + "optional false", + ], + [ + "block options", + "name temperatureprintrecord", + "type record temperature print_format formatrecord", + "shape", + "reader urword", + "optional true", + ], + [ + "block options", + "name print_format", + "type keyword", + "shape", + "in_record true", + "reader urword", + "tagged true", + "optional false", + ], + [ + "block options", + "name formatrecord", + "type record columns width digits format", + "shape", + "in_record true", + "reader urword", + "tagged", + "optional false", + ], + [ + "block options", + "name columns", + "type integer", + "shape", + "in_record true", + "reader urword", + "tagged true", + "optional", + ], + [ + "block options", + "name width", + "type integer", + "shape", + "in_record true", + "reader urword", + "tagged true", + "optional", + ], + [ + "block options", + "name digits", + "type integer", + "shape", + "in_record true", + "reader urword", + "tagged true", + "optional", + ], + [ + "block options", + "name format", + "type string", + "shape", + "in_record true", + "reader urword", + "tagged false", + "optional false", + ], + [ + "block period", + "name iper", + "type integer", + "block_variable True", + "in_record true", + "tagged false", + "shape", + "valid", + "reader urword", + "optional false", + ], + [ + "block period", + "name saverecord", + "type record save rtype ocsetting", + "shape", + "reader urword", + "tagged false", + "optional true", + ], + [ + "block period", + "name save", + "type keyword", + "shape", + "in_record true", + "reader urword", + "tagged true", + "optional false", + ], + [ + "block period", + "name printrecord", + "type record print rtype ocsetting", + "shape", + "reader urword", + "tagged false", + "optional true", + ], + [ + "block period", + "name print", + "type keyword", + "shape", + "in_record true", + "reader urword", + "tagged true", + "optional false", + ], + [ + "block period", + "name rtype", + "type string", + "shape", + "in_record true", + "reader urword", + "tagged false", + "optional false", + ], + [ + "block period", + "name ocsetting", + "type keystring all first last frequency steps", + "shape", + "tagged false", + "in_record true", + "reader urword", + ], + [ + "block period", + "name all", + "type keyword", + "shape", + "in_record true", + "reader urword", + ], + [ + "block period", + "name first", + "type keyword", + "shape", + "in_record true", + "reader urword", + ], + [ + "block period", + "name last", + "type keyword", + "shape", + "in_record true", + "reader urword", + ], + [ + "block period", + "name frequency", + "type integer", + "shape", + "tagged true", + "in_record true", + "reader urword", + ], + [ + "block period", + "name steps", + "type integer", + "shape ( + * is the exchange type (GWF-GWF or GWF-GWT). + exgmnamea : + * is the name of the first model that is part of this exchange. + exgmnameb : + * is the name of the second model that is part of this exchange. + filename : String + File name for this package. + pname : String + Package name for this package. + parent_file : MFPackage + Parent package file that references this package. Only needed for + utility packages (mfutl*). For example, mfutllaktab package must have + a mfgwflak package parent_file. + + """ + + package_abbr = "gwfgwe" + _package_type = "gwfgwe" + dfn_file_name = "exg-gwfgwe.dfn" + + dfn = [ + [ + "header", + ], + ] + + def __init__( + self, + simulation, + loading_package=False, + exgtype="GWF6-GWE6", + exgmnamea=None, + exgmnameb=None, + filename=None, + pname=None, + **kwargs, + ): + super().__init__( + simulation, "gwfgwe", filename, pname, loading_package, **kwargs + ) + + # set up variables + self.exgtype = exgtype + + self.exgmnamea = exgmnamea + + self.exgmnameb = exgmnameb + + simulation.register_exchange_file(self) + + self._init_complete = True diff --git a/flopy/mf6/modflow/mfgwfgwf.py b/flopy/mf6/modflow/mfgwfgwf.py index f01443068..f3cc9d867 100644 --- a/flopy/mf6/modflow/mfgwfgwf.py +++ b/flopy/mf6/modflow/mfgwfgwf.py @@ -1,6 +1,6 @@ # DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY # mf6/utils/createpackages.py -# FILE created on February 07, 2024 20:16:08 UTC +# FILE created on May 23, 2024 14:30:07 UTC from .. import mfpackage from ..data.mfdatautil import ListTemplateGenerator @@ -34,13 +34,17 @@ class ModflowGwfgwf(mfpackage.MFPackage): indicates that a normal vector points directly along the positive x axis. The connection face normal is a normal vector on the cell face shared between the cell in model 1 and the cell in model 2 pointing - away from the model 1 cell. Additional information on "ANGLDEGX" is - provided in the description of the DISU Package. If an auxiliary - variable with the name "CDIST" is found, then this information will - be used as the straight-line connection distance, including the - vertical component, between the two cell centers. Both ANGLDEGX and - CDIST are required if specific discharge is calculated for either of - the groundwater models. + away from the model 1 cell. Additional information on "ANGLDEGX" and + when it is required is provided in the description of the DISU + Package. If an auxiliary variable with the name "CDIST" is found, + then this information will be used in the calculation of specific + discharge within model cells connected by the exchange. For a + horizontal connection, CDIST should be specified as the horizontal + distance between the cell centers, and should not include the + vertical component. For vertical connections, CDIST should be + specified as the difference in elevation between the two cell + centers. Both ANGLDEGX and CDIST are required if specific discharge + is calculated for either of the groundwater models. boundnames : boolean * boundnames (boolean) keyword to indicate that boundary names may be provided with the list of GWF Exchange cells. @@ -452,6 +456,7 @@ class ModflowGwfgwf(mfpackage.MFPackage): "shape (naux)", "reader urword", "optional true", + "mf6internal auxvar", ], [ "block exchangedata", diff --git a/flopy/mf6/modflow/mfgwfgwt.py b/flopy/mf6/modflow/mfgwfgwt.py index 917ceb14d..0ae8b9735 100644 --- a/flopy/mf6/modflow/mfgwfgwt.py +++ b/flopy/mf6/modflow/mfgwfgwt.py @@ -1,6 +1,6 @@ # DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY # mf6/utils/createpackages.py -# FILE created on February 07, 2024 20:16:08 UTC +# FILE created on May 23, 2024 14:30:07 UTC from .. import mfpackage diff --git a/flopy/mf6/modflow/mfgwfhfb.py b/flopy/mf6/modflow/mfgwfhfb.py index 97f4e510b..ea5c894bd 100644 --- a/flopy/mf6/modflow/mfgwfhfb.py +++ b/flopy/mf6/modflow/mfgwfhfb.py @@ -1,6 +1,6 @@ # DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY # mf6/utils/createpackages.py -# FILE created on February 07, 2024 20:16:08 UTC +# FILE created on May 23, 2024 14:30:07 UTC from .. import mfpackage from ..data.mfdatautil import ListTemplateGenerator diff --git a/flopy/mf6/modflow/mfgwfic.py b/flopy/mf6/modflow/mfgwfic.py index 7c81d99bc..65efa5ab8 100644 --- a/flopy/mf6/modflow/mfgwfic.py +++ b/flopy/mf6/modflow/mfgwfic.py @@ -1,6 +1,6 @@ # DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY # mf6/utils/createpackages.py -# FILE created on February 07, 2024 20:16:08 UTC +# FILE created on May 23, 2024 14:30:07 UTC from .. import mfpackage from ..data.mfdatautil import ArrayTemplateGenerator @@ -17,6 +17,9 @@ class ModflowGwfic(mfpackage.MFPackage): loading_package : bool Do not set this parameter. It is intended for debugging and internal processing purposes only. + export_array_ascii : boolean + * export_array_ascii (boolean) keyword that specifies input griddata + arrays should be written to layered ascii output files. strt : [double] * strt (double) is the initial (starting) head---that is, head at the beginning of the GWF Model simulation. STRT must be specified for all @@ -48,6 +51,14 @@ class ModflowGwfic(mfpackage.MFPackage): [ "header", ], + [ + "block options", + "name export_array_ascii", + "type keyword", + "reader urword", + "optional true", + "mf6internal export_ascii", + ], [ "block griddata", "name strt", @@ -63,6 +74,7 @@ def __init__( self, model, loading_package=False, + export_array_ascii=None, strt=1.0, filename=None, pname=None, @@ -73,5 +85,8 @@ def __init__( ) # set up variables + self.export_array_ascii = self.build_mfdata( + "export_array_ascii", export_array_ascii + ) self.strt = self.build_mfdata("strt", strt) self._init_complete = True diff --git a/flopy/mf6/modflow/mfgwflak.py b/flopy/mf6/modflow/mfgwflak.py index 759e4a65f..06ea7e5c4 100644 --- a/flopy/mf6/modflow/mfgwflak.py +++ b/flopy/mf6/modflow/mfgwflak.py @@ -1,6 +1,6 @@ # DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY # mf6/utils/createpackages.py -# FILE created on February 07, 2024 20:16:08 UTC +# FILE created on May 23, 2024 14:30:07 UTC from .. import mfpackage from ..data.mfdatautil import ListTemplateGenerator diff --git a/flopy/mf6/modflow/mfgwfmaw.py b/flopy/mf6/modflow/mfgwfmaw.py index 9e72fa1d0..b0fd0fe12 100644 --- a/flopy/mf6/modflow/mfgwfmaw.py +++ b/flopy/mf6/modflow/mfgwfmaw.py @@ -1,6 +1,6 @@ # DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY # mf6/utils/createpackages.py -# FILE created on February 07, 2024 20:16:08 UTC +# FILE created on May 23, 2024 14:30:07 UTC from .. import mfpackage from ..data.mfdatautil import ListTemplateGenerator diff --git a/flopy/mf6/modflow/mfgwfmvr.py b/flopy/mf6/modflow/mfgwfmvr.py index 1916be736..73949339d 100644 --- a/flopy/mf6/modflow/mfgwfmvr.py +++ b/flopy/mf6/modflow/mfgwfmvr.py @@ -1,6 +1,6 @@ # DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY # mf6/utils/createpackages.py -# FILE created on February 07, 2024 20:16:08 UTC +# FILE created on May 23, 2024 14:30:07 UTC from .. import mfpackage from ..data.mfdatautil import ListTemplateGenerator diff --git a/flopy/mf6/modflow/mfgwfnam.py b/flopy/mf6/modflow/mfgwfnam.py index 574df2652..ffbca4beb 100644 --- a/flopy/mf6/modflow/mfgwfnam.py +++ b/flopy/mf6/modflow/mfgwfnam.py @@ -1,6 +1,6 @@ # DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY # mf6/utils/createpackages.py -# FILE created on February 07, 2024 20:16:08 UTC +# FILE created on May 23, 2024 14:30:07 UTC from .. import mfpackage from ..data.mfdatautil import ListTemplateGenerator @@ -45,8 +45,8 @@ class ModflowGwfnam(mfpackage.MFPackage): Newton-Raphson UNDER_RELAXATION is not applied. packages : [ftype, fname, pname] * ftype (string) is the file type, which must be one of the following - character values shown in table in mf6io.pdf. Ftype may be entered in - any combination of uppercase and lowercase. + character values shown in table ref{table:ftype-gwf}. Ftype may be + entered in any combination of uppercase and lowercase. * fname (string) is the name of the file containing the package input. The path to the file should be included if the file is not located in the folder where the program was run. diff --git a/flopy/mf6/modflow/mfgwfnpf.py b/flopy/mf6/modflow/mfgwfnpf.py index db25596f2..ad3798a87 100644 --- a/flopy/mf6/modflow/mfgwfnpf.py +++ b/flopy/mf6/modflow/mfgwfnpf.py @@ -1,6 +1,6 @@ # DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY # mf6/utils/createpackages.py -# FILE created on February 07, 2024 20:16:08 UTC +# FILE created on May 23, 2024 14:30:07 UTC from .. import mfpackage from ..data.mfdatautil import ArrayTemplateGenerator, ListTemplateGenerator @@ -108,17 +108,11 @@ class ModflowGwfnpf(mfpackage.MFPackage): containing data for the tvk package with variable names as keys and package data as values. Data just for the perioddata variable is also acceptable. See tvk package documentation for more information. + export_array_ascii : boolean + * export_array_ascii (boolean) keyword that specifies input griddata + arrays should be written to layered ascii output files. dev_no_newton : boolean * dev_no_newton (boolean) turn off Newton for unconfined cells - dev_modflowusg_upstream_weighted_saturation : boolean - * dev_modflowusg_upstream_weighted_saturation (boolean) use MODFLOW-USG - upstream-weighted saturation approach - dev_modflownwt_upstream_weighting : boolean - * dev_modflownwt_upstream_weighting (boolean) use MODFLOW-NWT approach - for upstream weighting - dev_minimum_saturated_thickness : double - * dev_minimum_saturated_thickness (double) set minimum allowed - saturated thickness dev_omega : double * dev_omega (double) set saturation omega value icelltype : [integer] @@ -455,35 +449,19 @@ class ModflowGwfnpf(mfpackage.MFPackage): ], [ "block options", - "name dev_no_newton", - "type keyword", - "reader urword", - "optional true", - "mf6internal inewton", - ], - [ - "block options", - "name dev_modflowusg_upstream_weighted_saturation", + "name export_array_ascii", "type keyword", "reader urword", "optional true", - "mf6internal iusgnrhc", + "mf6internal export_ascii", ], [ "block options", - "name dev_modflownwt_upstream_weighting", + "name dev_no_newton", "type keyword", "reader urword", "optional true", - "mf6internal inwtupw", - ], - [ - "block options", - "name dev_minimum_saturated_thickness", - "type double precision", - "reader urword", - "optional true", - "mf6internal satmin", + "mf6internal inewton", ], [ "block options", @@ -594,10 +572,8 @@ def __init__( k22overk=None, k33overk=None, perioddata=None, + export_array_ascii=None, dev_no_newton=None, - dev_modflowusg_upstream_weighted_saturation=None, - dev_modflownwt_upstream_weighting=None, - dev_minimum_saturated_thickness=None, dev_omega=None, icelltype=0, k=1.0, @@ -638,18 +614,10 @@ def __init__( self._tvk_package = self.build_child_package( "tvk", perioddata, "tvk_perioddata", self._tvk_filerecord ) - self.dev_no_newton = self.build_mfdata("dev_no_newton", dev_no_newton) - self.dev_modflowusg_upstream_weighted_saturation = self.build_mfdata( - "dev_modflowusg_upstream_weighted_saturation", - dev_modflowusg_upstream_weighted_saturation, - ) - self.dev_modflownwt_upstream_weighting = self.build_mfdata( - "dev_modflownwt_upstream_weighting", - dev_modflownwt_upstream_weighting, - ) - self.dev_minimum_saturated_thickness = self.build_mfdata( - "dev_minimum_saturated_thickness", dev_minimum_saturated_thickness + self.export_array_ascii = self.build_mfdata( + "export_array_ascii", export_array_ascii ) + self.dev_no_newton = self.build_mfdata("dev_no_newton", dev_no_newton) self.dev_omega = self.build_mfdata("dev_omega", dev_omega) self.icelltype = self.build_mfdata("icelltype", icelltype) self.k = self.build_mfdata("k", k) diff --git a/flopy/mf6/modflow/mfgwfoc.py b/flopy/mf6/modflow/mfgwfoc.py index c637ebe74..906c319ad 100644 --- a/flopy/mf6/modflow/mfgwfoc.py +++ b/flopy/mf6/modflow/mfgwfoc.py @@ -1,6 +1,6 @@ # DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY # mf6/utils/createpackages.py -# FILE created on February 07, 2024 20:16:08 UTC +# FILE created on May 23, 2024 14:30:07 UTC from .. import mfpackage from ..data.mfdatautil import ListTemplateGenerator diff --git a/flopy/mf6/modflow/mfgwfprt.py b/flopy/mf6/modflow/mfgwfprt.py new file mode 100644 index 000000000..7a008660b --- /dev/null +++ b/flopy/mf6/modflow/mfgwfprt.py @@ -0,0 +1,70 @@ +# DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY +# mf6/utils/createpackages.py +# FILE created on May 23, 2024 14:30:07 UTC +from .. import mfpackage + + +class ModflowGwfprt(mfpackage.MFPackage): + """ + ModflowGwfprt defines a gwfprt package. + + Parameters + ---------- + simulation : MFSimulation + Simulation that this package is a part of. Package is automatically + added to simulation when it is initialized. + loading_package : bool + Do not set this parameter. It is intended for debugging and internal + processing purposes only. + exgtype : + * is the exchange type (GWF-GWF or GWF-GWT). + exgmnamea : + * is the name of the first model that is part of this exchange. + exgmnameb : + * is the name of the second model that is part of this exchange. + filename : String + File name for this package. + pname : String + Package name for this package. + parent_file : MFPackage + Parent package file that references this package. Only needed for + utility packages (mfutl*). For example, mfutllaktab package must have + a mfgwflak package parent_file. + + """ + + package_abbr = "gwfprt" + _package_type = "gwfprt" + dfn_file_name = "exg-gwfprt.dfn" + + dfn = [ + [ + "header", + ], + ] + + def __init__( + self, + simulation, + loading_package=False, + exgtype="GWF6-PRT6", + exgmnamea=None, + exgmnameb=None, + filename=None, + pname=None, + **kwargs, + ): + super().__init__( + simulation, "gwfprt", filename, pname, loading_package, **kwargs + ) + + # set up variables + self.exgtype = exgtype + + self.exgmnamea = exgmnamea + + self.exgmnameb = exgmnameb + + simulation.register_exchange_file(self) + + self._init_complete = True diff --git a/flopy/mf6/modflow/mfgwfrch.py b/flopy/mf6/modflow/mfgwfrch.py index 4697a7b46..cb8f3d386 100644 --- a/flopy/mf6/modflow/mfgwfrch.py +++ b/flopy/mf6/modflow/mfgwfrch.py @@ -1,6 +1,6 @@ # DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY # mf6/utils/createpackages.py -# FILE created on February 07, 2024 20:16:08 UTC +# FILE created on May 23, 2024 14:30:07 UTC from .. import mfpackage from ..data.mfdatautil import ListTemplateGenerator diff --git a/flopy/mf6/modflow/mfgwfrcha.py b/flopy/mf6/modflow/mfgwfrcha.py index 31f7a253e..84aefa86e 100644 --- a/flopy/mf6/modflow/mfgwfrcha.py +++ b/flopy/mf6/modflow/mfgwfrcha.py @@ -1,6 +1,6 @@ # DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY # mf6/utils/createpackages.py -# FILE created on February 07, 2024 20:16:08 UTC +# FILE created on May 23, 2024 14:30:07 UTC from .. import mfpackage from ..data.mfdatautil import ArrayTemplateGenerator, ListTemplateGenerator @@ -20,7 +20,11 @@ class ModflowGwfrcha(mfpackage.MFPackage): readasarrays : boolean * readasarrays (boolean) indicates that array-based input will be used for the Recharge Package. This keyword must be specified to use - array-based input. + array-based input. When READASARRAYS is specified, values must be + provided for every cell within a model layer, even those cells that + have an IDOMAIN value less than one. Values assigned to cells with + IDOMAIN values less than one are not used and have no effect on + simulation results. fixed_cell : boolean * fixed_cell (boolean) indicates that recharge will not be reassigned to a cell underlying the cell specified in the list if the specified diff --git a/flopy/mf6/modflow/mfgwfriv.py b/flopy/mf6/modflow/mfgwfriv.py index 13fca28a6..336cd9f93 100644 --- a/flopy/mf6/modflow/mfgwfriv.py +++ b/flopy/mf6/modflow/mfgwfriv.py @@ -1,6 +1,6 @@ # DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY # mf6/utils/createpackages.py -# FILE created on February 07, 2024 20:16:08 UTC +# FILE created on May 23, 2024 14:30:07 UTC from .. import mfpackage from ..data.mfdatautil import ListTemplateGenerator diff --git a/flopy/mf6/modflow/mfgwfsfr.py b/flopy/mf6/modflow/mfgwfsfr.py index 31ca9b42c..7b1ac67c3 100644 --- a/flopy/mf6/modflow/mfgwfsfr.py +++ b/flopy/mf6/modflow/mfgwfsfr.py @@ -1,6 +1,6 @@ # DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY # mf6/utils/createpackages.py -# FILE created on February 07, 2024 20:16:08 UTC +# FILE created on May 23, 2024 14:30:07 UTC from .. import mfpackage from ..data.mfdatautil import ListTemplateGenerator @@ -171,10 +171,13 @@ class ModflowGwfsfr(mfpackage.MFPackage): * rbth (double) real value that defines the thickness of the reach streambed. RBTH can be any value if the reach is not connected to an underlying GWF cell. Otherwise, RBTH must be greater than zero. - * rhk (double) real value that defines the hydraulic conductivity of - the reach streambed. RHK can be any positive value if the reach is - not connected to an underlying GWF cell. Otherwise, RHK must be - greater than zero. + * rhk (double) real or character value that defines the hydraulic + conductivity of the reach streambed. RHK can be any positive value if + the reach is not connected to an underlying GWF cell. Otherwise, RHK + must be greater than zero. If the Options block includes a + TIMESERIESFILE entry (see the "Time-Variable Input" section), values + can be obtained from a time series by entering the time-series name + in place of a numeric value. * man (string) real or character value that defines the Manning's roughness coefficient for the reach. MAN must be greater than zero. If the Options block includes a TIMESERIESFILE entry (see the "Time- @@ -310,8 +313,9 @@ class ModflowGwfsfr(mfpackage.MFPackage): index variables. * sfrsetting (keystring) line of information that is parsed into a keyword and values. Keyword values that can be used to start the - SFRSETTING string include: STATUS, MANNING, STAGE, INFLOW, RAINFALL, - EVAPORATION, RUNOFF, DIVERSION, UPSTREAM_FRACTION, and AUXILIARY. + SFRSETTING string include: STATUS, BEDK, MANNING, STAGE, INFLOW, + RAINFALL, EVAPORATION, RUNOFF, DIVERSION, UPSTREAM_FRACTION, and + AUXILIARY. status : [string] * status (string) keyword option to define stream reach status. STATUS can be ACTIVE, INACTIVE, or SIMPLE. The SIMPLE STATUS @@ -329,6 +333,15 @@ class ModflowGwfsfr(mfpackage.MFPackage): respectively, to ensure that the active reach receives all of the downstream outflow from the upstream reach. By default, STATUS is ACTIVE. + bedk : [string] + * bedk (string) real or character value that defines the + hydraulic conductivity of the reach streambed. BEDK can be + any positive value if the reach is not connected to an + underlying GWF cell. Otherwise, BEDK must be greater than + zero. If the Options block includes a TIMESERIESFILE entry + (see the "Time-Variable Input" section), values can be + obtained from a time series by entering the time-series name + in place of a numeric value. manning : [string] * manning (string) real or character value that defines the Manning's roughness coefficient for the reach. MANNING must @@ -863,6 +876,7 @@ class ModflowGwfsfr(mfpackage.MFPackage): "tagged false", "in_record true", "reader urword", + "time_series true", ], [ "block packagedata", @@ -1079,9 +1093,9 @@ class ModflowGwfsfr(mfpackage.MFPackage): [ "block period", "name sfrsetting", - "type keystring status manning stage inflow rainfall evaporation " - "runoff diversionrecord upstream_fraction cross_sectionrecord " - "auxiliaryrecord", + "type keystring status bedk manning stage inflow rainfall " + "evaporation runoff diversionrecord upstream_fraction " + "cross_sectionrecord auxiliaryrecord", "shape", "tagged false", "in_record true", @@ -1096,6 +1110,16 @@ class ModflowGwfsfr(mfpackage.MFPackage): "in_record true", "reader urword", ], + [ + "block period", + "name bedk", + "type string", + "shape", + "tagged true", + "in_record true", + "reader urword", + "time_series true", + ], [ "block period", "name manning", diff --git a/flopy/mf6/modflow/mfgwfsto.py b/flopy/mf6/modflow/mfgwfsto.py index b4dc1d9fd..398b5572e 100644 --- a/flopy/mf6/modflow/mfgwfsto.py +++ b/flopy/mf6/modflow/mfgwfsto.py @@ -1,6 +1,6 @@ # DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY # mf6/utils/createpackages.py -# FILE created on February 07, 2024 20:16:08 UTC +# FILE created on May 23, 2024 14:30:07 UTC from .. import mfpackage from ..data.mfdatautil import ArrayTemplateGenerator, ListTemplateGenerator diff --git a/flopy/mf6/modflow/mfgwfuzf.py b/flopy/mf6/modflow/mfgwfuzf.py index 27c1e6df6..1549865f2 100644 --- a/flopy/mf6/modflow/mfgwfuzf.py +++ b/flopy/mf6/modflow/mfgwfuzf.py @@ -1,6 +1,6 @@ # DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY # mf6/utils/createpackages.py -# FILE created on February 07, 2024 20:16:08 UTC +# FILE created on May 23, 2024 14:30:07 UTC from .. import mfpackage from ..data.mfdatautil import ListTemplateGenerator @@ -586,6 +586,7 @@ class ModflowGwfuzf(mfpackage.MFPackage): "tagged true", "reader urword", "optional true", + "deprecated 6.5.0", ], [ "block options", diff --git a/flopy/mf6/modflow/mfgwfvsc.py b/flopy/mf6/modflow/mfgwfvsc.py index ff62a22ab..76dec5a1f 100644 --- a/flopy/mf6/modflow/mfgwfvsc.py +++ b/flopy/mf6/modflow/mfgwfvsc.py @@ -1,6 +1,6 @@ # DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY # mf6/utils/createpackages.py -# FILE created on February 07, 2024 20:16:08 UTC +# FILE created on May 23, 2024 14:30:07 UTC from .. import mfpackage from ..data.mfdatautil import ListTemplateGenerator diff --git a/flopy/mf6/modflow/mfgwfwel.py b/flopy/mf6/modflow/mfgwfwel.py index b4a0831e6..67da4504c 100644 --- a/flopy/mf6/modflow/mfgwfwel.py +++ b/flopy/mf6/modflow/mfgwfwel.py @@ -1,6 +1,6 @@ # DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY # mf6/utils/createpackages.py -# FILE created on February 07, 2024 20:16:08 UTC +# FILE created on May 23, 2024 14:30:07 UTC from .. import mfpackage from ..data.mfdatautil import ListTemplateGenerator @@ -59,7 +59,11 @@ class ModflowGwfwel(mfpackage.MFPackage): is equal to or less than the calculated interval above the cell bottom. AUTO_FLOW_REDUCE is set to 0.1 if the specified value is less than or equal to zero. By default, negative pumping rates are not - reduced during a simulation. + reduced during a simulation. This AUTO_FLOW_REDUCE option only + applies to wells in model cells that are marked as "convertible" + (ICELLTYPE /= 0) in the Node Property Flow (NPF) input file. + Reduction in flow will not occur for wells in cells marked as + confined (ICELLTYPE = 0). afrcsv_filerecord : [afrcsvfile] * afrcsvfile (string) name of the comma-separated value (CSV) output file to write information about well extraction rates that have been diff --git a/flopy/mf6/modflow/mfgwt.py b/flopy/mf6/modflow/mfgwt.py index 80aaa1286..5a39c1e55 100644 --- a/flopy/mf6/modflow/mfgwt.py +++ b/flopy/mf6/modflow/mfgwt.py @@ -1,6 +1,6 @@ # DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY # mf6/utils/createpackages.py -# FILE created on February 07, 2024 20:16:08 UTC +# FILE created on May 23, 2024 14:30:07 UTC from .. import mfmodel from ..data.mfdatautil import ArrayTemplateGenerator, ListTemplateGenerator @@ -47,8 +47,8 @@ class ModflowGwt(mfmodel.MFModel): Output Control. packages : [ftype, fname, pname] * ftype (string) is the file type, which must be one of the following - character values shown in table in mf6io.pdf. Ftype may be entered in - any combination of uppercase and lowercase. + character values shown in table ref{table:ftype-gwt}. Ftype may be + entered in any combination of uppercase and lowercase. * fname (string) is the name of the file containing the package input. The path to the file should be included if the file is not located in the folder where the program was run. diff --git a/flopy/mf6/modflow/mfgwtadv.py b/flopy/mf6/modflow/mfgwtadv.py index 542be274e..56e7e10e2 100644 --- a/flopy/mf6/modflow/mfgwtadv.py +++ b/flopy/mf6/modflow/mfgwtadv.py @@ -1,6 +1,6 @@ # DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY # mf6/utils/createpackages.py -# FILE created on February 07, 2024 20:16:08 UTC +# FILE created on May 23, 2024 14:30:07 UTC from .. import mfpackage diff --git a/flopy/mf6/modflow/mfgwtapi.py b/flopy/mf6/modflow/mfgwtapi.py index 4eef482cb..fdd2b6639 100644 --- a/flopy/mf6/modflow/mfgwtapi.py +++ b/flopy/mf6/modflow/mfgwtapi.py @@ -1,6 +1,6 @@ # DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY # mf6/utils/createpackages.py -# FILE created on February 07, 2024 20:16:08 UTC +# FILE created on May 23, 2024 14:30:07 UTC from .. import mfpackage from ..data.mfdatautil import ListTemplateGenerator diff --git a/flopy/mf6/modflow/mfgwtcnc.py b/flopy/mf6/modflow/mfgwtcnc.py index b5c76de76..535dc6a35 100644 --- a/flopy/mf6/modflow/mfgwtcnc.py +++ b/flopy/mf6/modflow/mfgwtcnc.py @@ -1,6 +1,6 @@ # DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY # mf6/utils/createpackages.py -# FILE created on February 07, 2024 20:16:08 UTC +# FILE created on May 23, 2024 14:30:07 UTC from .. import mfpackage from ..data.mfdatautil import ListTemplateGenerator diff --git a/flopy/mf6/modflow/mfgwtdis.py b/flopy/mf6/modflow/mfgwtdis.py index 7cf93d686..f1b09397b 100644 --- a/flopy/mf6/modflow/mfgwtdis.py +++ b/flopy/mf6/modflow/mfgwtdis.py @@ -1,6 +1,6 @@ # DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY # mf6/utils/createpackages.py -# FILE created on February 07, 2024 20:16:08 UTC +# FILE created on May 23, 2024 14:30:07 UTC from .. import mfpackage from ..data.mfdatautil import ArrayTemplateGenerator @@ -42,6 +42,9 @@ class ModflowGwtdis(mfpackage.MFPackage): value of 0.0 is assigned. The value for ANGROT does not affect the model simulation, but it is written to the binary grid file so that postprocessors can locate the grid in space. + export_array_ascii : boolean + * export_array_ascii (boolean) keyword that specifies input griddata + arrays should be written to layered ascii output files. nlay : integer * nlay (integer) is the number of layers in the model grid. nrow : integer @@ -128,6 +131,14 @@ class ModflowGwtdis(mfpackage.MFPackage): "reader urword", "optional true", ], + [ + "block options", + "name export_array_ascii", + "type keyword", + "reader urword", + "optional true", + "mf6internal export_ascii", + ], [ "block dimensions", "name nlay", @@ -205,6 +216,7 @@ def __init__( xorigin=None, yorigin=None, angrot=None, + export_array_ascii=None, nlay=1, nrow=2, ncol=2, @@ -227,6 +239,9 @@ def __init__( self.xorigin = self.build_mfdata("xorigin", xorigin) self.yorigin = self.build_mfdata("yorigin", yorigin) self.angrot = self.build_mfdata("angrot", angrot) + self.export_array_ascii = self.build_mfdata( + "export_array_ascii", export_array_ascii + ) self.nlay = self.build_mfdata("nlay", nlay) self.nrow = self.build_mfdata("nrow", nrow) self.ncol = self.build_mfdata("ncol", ncol) diff --git a/flopy/mf6/modflow/mfgwtdisu.py b/flopy/mf6/modflow/mfgwtdisu.py index ea0ac306e..fbd2613b0 100644 --- a/flopy/mf6/modflow/mfgwtdisu.py +++ b/flopy/mf6/modflow/mfgwtdisu.py @@ -1,6 +1,6 @@ # DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY # mf6/utils/createpackages.py -# FILE created on February 07, 2024 20:16:08 UTC +# FILE created on May 23, 2024 14:30:07 UTC from .. import mfpackage from ..data.mfdatautil import ArrayTemplateGenerator, ListTemplateGenerator @@ -53,6 +53,9 @@ class ModflowGwtdisu(mfpackage.MFPackage): cell by a value less than this tolerance, then the program will not terminate with an error. The default value is zero. This option should generally not be used. + export_array_ascii : boolean + * export_array_ascii (boolean) keyword that specifies input griddata + arrays should be written to layered ascii output files. nodes : integer * nodes (integer) is the number of cells in the model grid. nja : integer @@ -142,7 +145,7 @@ class ModflowGwtdisu(mfpackage.MFPackage): degrees points in the positive y-axis direction. ANGLDEGX is only needed if horizontal anisotropy is specified in the NPF Package, if the XT3D option is used in the NPF Package, or if the - SAVE_SPECIFIC_DISCHARGE option is specifed in the NPF Package. + SAVE_SPECIFIC_DISCHARGE option is specified in the NPF Package. ANGLDEGX does not need to be specified if these conditions are not met. ANGLDEGX is of size NJA; values specified for vertical connections and for the diagonal position are not used. Note that @@ -252,6 +255,14 @@ class ModflowGwtdisu(mfpackage.MFPackage): "default_value 0.0", "mf6internal voffsettol", ], + [ + "block options", + "name export_array_ascii", + "type keyword", + "reader urword", + "optional true", + "mf6internal export_ascii", + ], [ "block dimensions", "name nodes", @@ -456,6 +467,7 @@ def __init__( yorigin=None, angrot=None, vertical_offset_tolerance=0.0, + export_array_ascii=None, nodes=None, nja=None, nvert=None, @@ -488,6 +500,9 @@ def __init__( self.vertical_offset_tolerance = self.build_mfdata( "vertical_offset_tolerance", vertical_offset_tolerance ) + self.export_array_ascii = self.build_mfdata( + "export_array_ascii", export_array_ascii + ) self.nodes = self.build_mfdata("nodes", nodes) self.nja = self.build_mfdata("nja", nja) self.nvert = self.build_mfdata("nvert", nvert) diff --git a/flopy/mf6/modflow/mfgwtdisv.py b/flopy/mf6/modflow/mfgwtdisv.py index d07731710..05ad0b76f 100644 --- a/flopy/mf6/modflow/mfgwtdisv.py +++ b/flopy/mf6/modflow/mfgwtdisv.py @@ -1,6 +1,6 @@ # DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY # mf6/utils/createpackages.py -# FILE created on February 07, 2024 20:16:08 UTC +# FILE created on May 23, 2024 14:30:07 UTC from .. import mfpackage from ..data.mfdatautil import ArrayTemplateGenerator, ListTemplateGenerator @@ -45,6 +45,9 @@ class ModflowGwtdisv(mfpackage.MFPackage): The value for ANGROT does not affect the model simulation, but it is written to the binary grid file so that postprocessors can locate the grid in space. + export_array_ascii : boolean + * export_array_ascii (boolean) keyword that specifies input griddata + arrays should be written to layered ascii output files. nlay : integer * nlay (integer) is the number of layers in the model grid. ncpl : integer @@ -156,6 +159,14 @@ class ModflowGwtdisv(mfpackage.MFPackage): "reader urword", "optional true", ], + [ + "block options", + "name export_array_ascii", + "type keyword", + "reader urword", + "optional true", + "mf6internal export_ascii", + ], [ "block dimensions", "name nlay", @@ -304,6 +315,7 @@ def __init__( xorigin=None, yorigin=None, angrot=None, + export_array_ascii=None, nlay=None, ncpl=None, nvert=None, @@ -326,6 +338,9 @@ def __init__( self.xorigin = self.build_mfdata("xorigin", xorigin) self.yorigin = self.build_mfdata("yorigin", yorigin) self.angrot = self.build_mfdata("angrot", angrot) + self.export_array_ascii = self.build_mfdata( + "export_array_ascii", export_array_ascii + ) self.nlay = self.build_mfdata("nlay", nlay) self.ncpl = self.build_mfdata("ncpl", ncpl) self.nvert = self.build_mfdata("nvert", nvert) diff --git a/flopy/mf6/modflow/mfgwtdsp.py b/flopy/mf6/modflow/mfgwtdsp.py index de1cd4f90..93d15b3ca 100644 --- a/flopy/mf6/modflow/mfgwtdsp.py +++ b/flopy/mf6/modflow/mfgwtdsp.py @@ -1,6 +1,6 @@ # DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY # mf6/utils/createpackages.py -# FILE created on February 07, 2024 20:16:08 UTC +# FILE created on May 23, 2024 14:30:07 UTC from .. import mfpackage from ..data.mfdatautil import ArrayTemplateGenerator @@ -28,6 +28,9 @@ class ModflowGwtdsp(mfpackage.MFPackage): xt3d_rhs : boolean * xt3d_rhs (boolean) add xt3d terms to right-hand side, when possible. This option uses less memory, but may require more iterations. + export_array_ascii : boolean + * export_array_ascii (boolean) keyword that specifies input griddata + arrays should be written to layered ascii output files. diffc : [double] * diffc (double) effective molecular diffusion coefficient. alh : [double] @@ -105,6 +108,14 @@ class ModflowGwtdsp(mfpackage.MFPackage): "reader urword", "optional true", ], + [ + "block options", + "name export_array_ascii", + "type keyword", + "reader urword", + "optional true", + "mf6internal export_ascii", + ], [ "block griddata", "name diffc", @@ -167,6 +178,7 @@ def __init__( loading_package=False, xt3d_off=None, xt3d_rhs=None, + export_array_ascii=None, diffc=None, alh=None, alv=None, @@ -184,6 +196,9 @@ def __init__( # set up variables self.xt3d_off = self.build_mfdata("xt3d_off", xt3d_off) self.xt3d_rhs = self.build_mfdata("xt3d_rhs", xt3d_rhs) + self.export_array_ascii = self.build_mfdata( + "export_array_ascii", export_array_ascii + ) self.diffc = self.build_mfdata("diffc", diffc) self.alh = self.build_mfdata("alh", alh) self.alv = self.build_mfdata("alv", alv) diff --git a/flopy/mf6/modflow/mfgwtfmi.py b/flopy/mf6/modflow/mfgwtfmi.py index 423d428d7..5951f3b46 100644 --- a/flopy/mf6/modflow/mfgwtfmi.py +++ b/flopy/mf6/modflow/mfgwtfmi.py @@ -1,6 +1,6 @@ # DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY # mf6/utils/createpackages.py -# FILE created on February 07, 2024 20:16:08 UTC +# FILE created on May 23, 2024 14:30:07 UTC from .. import mfpackage from ..data.mfdatautil import ListTemplateGenerator diff --git a/flopy/mf6/modflow/mfgwtgwt.py b/flopy/mf6/modflow/mfgwtgwt.py index e90d60ae8..baa4fc3cc 100644 --- a/flopy/mf6/modflow/mfgwtgwt.py +++ b/flopy/mf6/modflow/mfgwtgwt.py @@ -1,6 +1,6 @@ # DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY # mf6/utils/createpackages.py -# FILE created on February 07, 2024 20:16:08 UTC +# FILE created on May 23, 2024 14:30:07 UTC from .. import mfpackage from ..data.mfdatautil import ListTemplateGenerator @@ -38,7 +38,7 @@ class ModflowGwtgwt(mfpackage.MFPackage): auxiliary : [string] * auxiliary (string) an array of auxiliary variable names. There is no limit on the number of auxiliary variables that can be provided. Most - auxiliary variables will not be used by the GWF-GWF Exchange, but + auxiliary variables will not be used by the GWT-GWT Exchange, but they will be available for use by other parts of the program. If an auxiliary variable with the name "ANGLDEGX" is found, then this information will be used as the angle (provided in degrees) between @@ -47,12 +47,8 @@ class ModflowGwtgwt(mfpackage.MFPackage): axis. The connection face normal is a normal vector on the cell face shared between the cell in model 1 and the cell in model 2 pointing away from the model 1 cell. Additional information on "ANGLDEGX" is - provided in the description of the DISU Package. If an auxiliary - variable with the name "CDIST" is found, then this information will - be used as the straight-line connection distance, including the - vertical component, between the two cell centers. Both ANGLDEGX and - CDIST are required if specific discharge is calculated for either of - the groundwater models. + provided in the description of the DISU Package. ANGLDEGX must be + specified if dispersion is simulated in the connected GWT models. boundnames : boolean * boundnames (boolean) keyword to indicate that boundary names may be provided with the list of GWT Exchange cells. @@ -412,6 +408,7 @@ class ModflowGwtgwt(mfpackage.MFPackage): "shape (naux)", "reader urword", "optional true", + "mf6internal auxvar", ], [ "block exchangedata", diff --git a/flopy/mf6/modflow/mfgwtic.py b/flopy/mf6/modflow/mfgwtic.py index a7f5fc635..b6fb52a54 100644 --- a/flopy/mf6/modflow/mfgwtic.py +++ b/flopy/mf6/modflow/mfgwtic.py @@ -1,6 +1,6 @@ # DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY # mf6/utils/createpackages.py -# FILE created on February 07, 2024 20:16:08 UTC +# FILE created on May 23, 2024 14:30:07 UTC from .. import mfpackage from ..data.mfdatautil import ArrayTemplateGenerator @@ -17,6 +17,9 @@ class ModflowGwtic(mfpackage.MFPackage): loading_package : bool Do not set this parameter. It is intended for debugging and internal processing purposes only. + export_array_ascii : boolean + * export_array_ascii (boolean) keyword that specifies input griddata + arrays should be written to layered ascii output files. strt : [double] * strt (double) is the initial (starting) concentration---that is, concentration at the beginning of the GWT Model simulation. STRT must @@ -42,6 +45,14 @@ class ModflowGwtic(mfpackage.MFPackage): [ "header", ], + [ + "block options", + "name export_array_ascii", + "type keyword", + "reader urword", + "optional true", + "mf6internal export_ascii", + ], [ "block griddata", "name strt", @@ -57,6 +68,7 @@ def __init__( self, model, loading_package=False, + export_array_ascii=None, strt=0.0, filename=None, pname=None, @@ -67,5 +79,8 @@ def __init__( ) # set up variables + self.export_array_ascii = self.build_mfdata( + "export_array_ascii", export_array_ascii + ) self.strt = self.build_mfdata("strt", strt) self._init_complete = True diff --git a/flopy/mf6/modflow/mfgwtist.py b/flopy/mf6/modflow/mfgwtist.py index 3df913bd5..625c00923 100644 --- a/flopy/mf6/modflow/mfgwtist.py +++ b/flopy/mf6/modflow/mfgwtist.py @@ -1,6 +1,6 @@ # DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY # mf6/utils/createpackages.py -# FILE created on February 07, 2024 20:16:08 UTC +# FILE created on May 23, 2024 14:30:07 UTC from .. import mfpackage from ..data.mfdatautil import ArrayTemplateGenerator, ListTemplateGenerator diff --git a/flopy/mf6/modflow/mfgwtlkt.py b/flopy/mf6/modflow/mfgwtlkt.py index 0b84249cc..80e80558c 100644 --- a/flopy/mf6/modflow/mfgwtlkt.py +++ b/flopy/mf6/modflow/mfgwtlkt.py @@ -1,6 +1,6 @@ # DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY # mf6/utils/createpackages.py -# FILE created on February 07, 2024 20:16:08 UTC +# FILE created on May 23, 2024 14:30:07 UTC from .. import mfpackage from ..data.mfdatautil import ListTemplateGenerator diff --git a/flopy/mf6/modflow/mfgwtmst.py b/flopy/mf6/modflow/mfgwtmst.py index 574137096..2007a5591 100644 --- a/flopy/mf6/modflow/mfgwtmst.py +++ b/flopy/mf6/modflow/mfgwtmst.py @@ -1,6 +1,6 @@ # DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY # mf6/utils/createpackages.py -# FILE created on February 07, 2024 20:16:08 UTC +# FILE created on May 23, 2024 14:30:07 UTC from .. import mfpackage from ..data.mfdatautil import ArrayTemplateGenerator diff --git a/flopy/mf6/modflow/mfgwtmvt.py b/flopy/mf6/modflow/mfgwtmvt.py index 809182955..9bfdf2438 100644 --- a/flopy/mf6/modflow/mfgwtmvt.py +++ b/flopy/mf6/modflow/mfgwtmvt.py @@ -1,6 +1,6 @@ # DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY # mf6/utils/createpackages.py -# FILE created on February 07, 2024 20:16:08 UTC +# FILE created on May 23, 2024 14:30:07 UTC from .. import mfpackage from ..data.mfdatautil import ListTemplateGenerator diff --git a/flopy/mf6/modflow/mfgwtmwt.py b/flopy/mf6/modflow/mfgwtmwt.py index fb98e11ea..d32195d90 100644 --- a/flopy/mf6/modflow/mfgwtmwt.py +++ b/flopy/mf6/modflow/mfgwtmwt.py @@ -1,6 +1,6 @@ # DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY # mf6/utils/createpackages.py -# FILE created on February 07, 2024 20:16:08 UTC +# FILE created on May 23, 2024 14:30:07 UTC from .. import mfpackage from ..data.mfdatautil import ListTemplateGenerator diff --git a/flopy/mf6/modflow/mfgwtnam.py b/flopy/mf6/modflow/mfgwtnam.py index 0a00c376b..9734127a4 100644 --- a/flopy/mf6/modflow/mfgwtnam.py +++ b/flopy/mf6/modflow/mfgwtnam.py @@ -1,6 +1,6 @@ # DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY # mf6/utils/createpackages.py -# FILE created on February 07, 2024 20:16:08 UTC +# FILE created on May 23, 2024 14:30:07 UTC from .. import mfpackage from ..data.mfdatautil import ListTemplateGenerator @@ -40,8 +40,8 @@ class ModflowGwtnam(mfpackage.MFPackage): Output Control. packages : [ftype, fname, pname] * ftype (string) is the file type, which must be one of the following - character values shown in table in mf6io.pdf. Ftype may be entered in - any combination of uppercase and lowercase. + character values shown in table ref{table:ftype-gwt}. Ftype may be + entered in any combination of uppercase and lowercase. * fname (string) is the name of the file containing the package input. The path to the file should be included if the file is not located in the folder where the program was run. diff --git a/flopy/mf6/modflow/mfgwtoc.py b/flopy/mf6/modflow/mfgwtoc.py index c8a22c5f5..ade2382cb 100644 --- a/flopy/mf6/modflow/mfgwtoc.py +++ b/flopy/mf6/modflow/mfgwtoc.py @@ -1,6 +1,6 @@ # DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY # mf6/utils/createpackages.py -# FILE created on February 07, 2024 20:16:08 UTC +# FILE created on May 23, 2024 14:30:07 UTC from .. import mfpackage from ..data.mfdatautil import ListTemplateGenerator diff --git a/flopy/mf6/modflow/mfgwtsft.py b/flopy/mf6/modflow/mfgwtsft.py index 92b99d45c..cc5afe7f8 100644 --- a/flopy/mf6/modflow/mfgwtsft.py +++ b/flopy/mf6/modflow/mfgwtsft.py @@ -1,6 +1,6 @@ # DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY # mf6/utils/createpackages.py -# FILE created on February 07, 2024 20:16:08 UTC +# FILE created on May 23, 2024 14:30:07 UTC from .. import mfpackage from ..data.mfdatautil import ListTemplateGenerator diff --git a/flopy/mf6/modflow/mfgwtsrc.py b/flopy/mf6/modflow/mfgwtsrc.py index 570f0a997..5e92ba7ae 100644 --- a/flopy/mf6/modflow/mfgwtsrc.py +++ b/flopy/mf6/modflow/mfgwtsrc.py @@ -1,6 +1,6 @@ # DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY # mf6/utils/createpackages.py -# FILE created on February 07, 2024 20:16:08 UTC +# FILE created on May 23, 2024 14:30:07 UTC from .. import mfpackage from ..data.mfdatautil import ListTemplateGenerator diff --git a/flopy/mf6/modflow/mfgwtssm.py b/flopy/mf6/modflow/mfgwtssm.py index 11ad9d00f..4ac75d98f 100644 --- a/flopy/mf6/modflow/mfgwtssm.py +++ b/flopy/mf6/modflow/mfgwtssm.py @@ -1,6 +1,6 @@ # DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY # mf6/utils/createpackages.py -# FILE created on February 07, 2024 20:16:08 UTC +# FILE created on May 23, 2024 14:30:07 UTC from .. import mfpackage from ..data.mfdatautil import ListTemplateGenerator diff --git a/flopy/mf6/modflow/mfgwtuzt.py b/flopy/mf6/modflow/mfgwtuzt.py index 4d1be0850..ddbc4bb0c 100644 --- a/flopy/mf6/modflow/mfgwtuzt.py +++ b/flopy/mf6/modflow/mfgwtuzt.py @@ -1,6 +1,6 @@ # DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY # mf6/utils/createpackages.py -# FILE created on February 07, 2024 20:16:08 UTC +# FILE created on May 23, 2024 14:30:07 UTC from .. import mfpackage from ..data.mfdatautil import ListTemplateGenerator diff --git a/flopy/mf6/modflow/mfims.py b/flopy/mf6/modflow/mfims.py index e718e07e5..28a2f28f4 100644 --- a/flopy/mf6/modflow/mfims.py +++ b/flopy/mf6/modflow/mfims.py @@ -1,6 +1,6 @@ # DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY # mf6/utils/createpackages.py -# FILE created on February 07, 2024 20:16:08 UTC +# FILE created on May 23, 2024 14:30:07 UTC from .. import mfpackage from ..data.mfdatautil import ListTemplateGenerator @@ -128,7 +128,7 @@ class ModflowIms(mfpackage.MFPackage): option is deprecated and has no effect on simulation results as of version 6.1.1. The keyword, OUTER_RCLOSEBND can be still be specified for backward compatibility with previous versions of MODFLOW 6 but - eventually specificiation of OUTER_RCLOSEBND will cause MODFLOW 6 to + eventually specification of OUTER_RCLOSEBND will cause MODFLOW 6 to terminate with an error. outer_maximum : integer * outer_maximum (integer) integer value defining the maximum number of diff --git a/flopy/mf6/modflow/mfmvr.py b/flopy/mf6/modflow/mfmvr.py index fe1b265f8..2d6841226 100644 --- a/flopy/mf6/modflow/mfmvr.py +++ b/flopy/mf6/modflow/mfmvr.py @@ -1,6 +1,6 @@ # DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY # mf6/utils/createpackages.py -# FILE created on February 07, 2024 20:16:08 UTC +# FILE created on May 23, 2024 14:30:07 UTC from .. import mfpackage from ..data.mfdatautil import ListTemplateGenerator diff --git a/flopy/mf6/modflow/mfmvt.py b/flopy/mf6/modflow/mfmvt.py index 0bf2177cc..8c16eea4a 100644 --- a/flopy/mf6/modflow/mfmvt.py +++ b/flopy/mf6/modflow/mfmvt.py @@ -1,6 +1,6 @@ # DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY # mf6/utils/createpackages.py -# FILE created on February 07, 2024 20:16:08 UTC +# FILE created on May 23, 2024 14:30:07 UTC from .. import mfpackage from ..data.mfdatautil import ListTemplateGenerator diff --git a/flopy/mf6/modflow/mfnam.py b/flopy/mf6/modflow/mfnam.py index 777597f77..d3ac30e3c 100644 --- a/flopy/mf6/modflow/mfnam.py +++ b/flopy/mf6/modflow/mfnam.py @@ -1,6 +1,6 @@ # DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY # mf6/utils/createpackages.py -# FILE created on February 07, 2024 20:16:08 UTC +# FILE created on May 23, 2024 14:30:07 UTC from .. import mfpackage from ..data.mfdatautil import ListTemplateGenerator @@ -40,6 +40,11 @@ class ModflowNam(mfpackage.MFPackage): keyword, input summaries will be written for those packages that support newer input data model routines. Not all packages are supported yet by the newer input data model routines. + hpc : {varname:data} or hpc_data data + * Contains data for the hpc package. Data can be stored in a dictionary + containing data for the hpc package with variable names as keys and + package data as values. Data just for the hpc variable is also + acceptable. See hpc package documentation for more information. tdis6 : string * tdis6 (string) is the name of the Temporal Discretization (TDIS) Input File. @@ -63,7 +68,8 @@ class ModflowNam(mfpackage.MFPackage): in the solution group, then MXITER must be 1. solutiongroup : [slntype, slnfname, slnmnames] * slntype (string) is the type of solution. The Integrated Model - Solution (IMS6) is the only supported option in this version. + Solution (IMS6) and Explicit Model Solution (EMS6) are the only + supported options in this version. * slnfname (string) name of file containing solution input. * slnmnames (string) is the array of model names to add to this solution. The number of model names is determined by the number of @@ -79,6 +85,9 @@ class ModflowNam(mfpackage.MFPackage): """ + hpc_filerecord = ListTemplateGenerator( + ("nam", "options", "hpc_filerecord") + ) models = ListTemplateGenerator(("nam", "models", "models")) exchanges = ListTemplateGenerator(("nam", "exchanges", "exchanges")) solutiongroup = ListTemplateGenerator( @@ -128,6 +137,48 @@ class ModflowNam(mfpackage.MFPackage): "reader urword", "optional true", ], + [ + "block options", + "name hpc_filerecord", + "type record hpc6 filein hpc6_filename", + "shape", + "reader urword", + "tagged true", + "optional true", + "construct_package hpc", + "construct_data hpc_data", + "parameter_name hpc", + ], + [ + "block options", + "name hpc6", + "type keyword", + "shape", + "in_record true", + "reader urword", + "tagged true", + "optional false", + ], + [ + "block options", + "name filein", + "type keyword", + "shape", + "in_record true", + "reader urword", + "tagged true", + "optional false", + ], + [ + "block options", + "name hpc6_filename", + "type string", + "preserve_case true", + "in_record true", + "reader urword", + "optional false", + "tagged false", + ], [ "block timing", "name tdis6", @@ -235,7 +286,7 @@ class ModflowNam(mfpackage.MFPackage): "block solutiongroup", "name slntype", "type string", - "valid ims6", + "valid ims6 ems6", "in_record true", "tagged false", "reader urword", @@ -290,6 +341,7 @@ def __init__( ) self.maxerrors = self.build_mfdata("maxerrors", maxerrors) self.print_input = self.build_mfdata("print_input", print_input) + self._hpc_filerecord = self.build_mfdata("hpc_filerecord", None) self.tdis6 = self.build_mfdata("tdis6", tdis6) self.models = self.build_mfdata("models", models) self.exchanges = self.build_mfdata("exchanges", exchanges) diff --git a/flopy/mf6/modflow/mfprt.py b/flopy/mf6/modflow/mfprt.py new file mode 100644 index 000000000..b5c5eacb2 --- /dev/null +++ b/flopy/mf6/modflow/mfprt.py @@ -0,0 +1,135 @@ +# DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY +# mf6/utils/createpackages.py +# FILE created on May 23, 2024 14:30:07 UTC +from .. import mfmodel +from ..data.mfdatautil import ArrayTemplateGenerator, ListTemplateGenerator + + +class ModflowPrt(mfmodel.MFModel): + """ + Modflowprt defines a prt model + + Parameters + ---------- + modelname : string + name of the model + model_nam_file : string + relative path to the model name file from model working folder + version : string + version of modflow + exe_name : string + model executable name + model_ws : string + model working folder path + sim : MFSimulation + Simulation that this model is a part of. Model is automatically + added to simulation when it is initialized. + list : string + * list (string) is name of the listing file to create for this PRT + model. If not specified, then the name of the list file will be the + basename of the PRT model name file and the '.lst' extension. For + example, if the PRT name file is called "my.model.nam" then the list + file will be called "my.model.lst". + print_input : boolean + * print_input (boolean) keyword to indicate that the list of all model + stress package information will be written to the listing file + immediately after it is read. + print_flows : boolean + * print_flows (boolean) keyword to indicate that the list of all model + package flow rates will be printed to the listing file for every + stress period time step in which "BUDGET PRINT" is specified in + Output Control. If there is no Output Control option and + "PRINT_FLOWS" is specified, then flow rates are printed for the last + time step of each stress period. + save_flows : boolean + * save_flows (boolean) keyword to indicate that all model package flow + terms will be written to the file specified with "BUDGET FILEOUT" in + Output Control. + packages : [ftype, fname, pname] + * ftype (string) is the file type, which must be one of the following + character values shown in table ref{table:ftype-prt}. Ftype may be + entered in any combination of uppercase and lowercase. + * fname (string) is the name of the file containing the package input. + The path to the file should be included if the file is not located in + the folder where the program was run. + * pname (string) is the user-defined name for the package. PNAME is + restricted to 16 characters. No spaces are allowed in PNAME. PNAME + character values are read and stored by the program for stress + packages only. These names may be useful for labeling purposes when + multiple stress packages of the same type are located within a single + PRT Model. If PNAME is specified for a stress package, then PNAME + will be used in the flow budget table in the listing file; it will + also be used for the text entry in the cell-by-cell budget file. + PNAME is case insensitive and is stored in all upper case letters. + + Methods + ------- + load : (simulation : MFSimulationData, model_name : string, + namfile : string, version : string, exe_name : string, + model_ws : string, strict : boolean) : MFSimulation + a class method that loads a model from files + """ + + model_type = "prt" + + def __init__( + self, + simulation, + modelname="model", + model_nam_file=None, + version="mf6", + exe_name="mf6", + model_rel_path=".", + list=None, + print_input=None, + print_flows=None, + save_flows=None, + **kwargs, + ): + super().__init__( + simulation, + model_type="prt6", + modelname=modelname, + model_nam_file=model_nam_file, + version=version, + exe_name=exe_name, + model_rel_path=model_rel_path, + **kwargs, + ) + + self.name_file.list.set_data(list) + self.name_file.print_input.set_data(print_input) + self.name_file.print_flows.set_data(print_flows) + self.name_file.save_flows.set_data(save_flows) + + self.list = self.name_file.list + self.print_input = self.name_file.print_input + self.print_flows = self.name_file.print_flows + self.save_flows = self.name_file.save_flows + + @classmethod + def load( + cls, + simulation, + structure, + modelname="NewModel", + model_nam_file="modflowtest.nam", + version="mf6", + exe_name="mf6", + strict=True, + model_rel_path=".", + load_only=None, + ): + return mfmodel.MFModel.load_base( + cls, + simulation, + structure, + modelname, + model_nam_file, + "prt6", + version, + exe_name, + strict, + model_rel_path, + load_only, + ) diff --git a/flopy/mf6/modflow/mfprtdis.py b/flopy/mf6/modflow/mfprtdis.py new file mode 100644 index 000000000..5a29b80c1 --- /dev/null +++ b/flopy/mf6/modflow/mfprtdis.py @@ -0,0 +1,253 @@ +# DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY +# mf6/utils/createpackages.py +# FILE created on May 23, 2024 14:30:07 UTC +from .. import mfpackage +from ..data.mfdatautil import ArrayTemplateGenerator + + +class ModflowPrtdis(mfpackage.MFPackage): + """ + ModflowPrtdis defines a dis package within a prt6 model. + + Parameters + ---------- + model : MFModel + Model that this package is a part of. Package is automatically + added to model when it is initialized. + loading_package : bool + Do not set this parameter. It is intended for debugging and internal + processing purposes only. + length_units : string + * length_units (string) is the length units used for this model. Values + can be "FEET", "METERS", or "CENTIMETERS". If not specified, the + default is "UNKNOWN". + nogrb : boolean + * nogrb (boolean) keyword to deactivate writing of the binary grid + file. + xorigin : double + * xorigin (double) x-position of the lower-left corner of the model + grid. A default value of zero is assigned if not specified. The value + for XORIGIN does not affect the model simulation, but it is written + to the binary grid file so that postprocessors can locate the grid in + space. + yorigin : double + * yorigin (double) y-position of the lower-left corner of the model + grid. If not specified, then a default value equal to zero is used. + The value for YORIGIN does not affect the model simulation, but it is + written to the binary grid file so that postprocessors can locate the + grid in space. + angrot : double + * angrot (double) counter-clockwise rotation angle (in degrees) of the + lower-left corner of the model grid. If not specified, then a default + value of 0.0 is assigned. The value for ANGROT does not affect the + model simulation, but it is written to the binary grid file so that + postprocessors can locate the grid in space. + export_array_ascii : boolean + * export_array_ascii (boolean) keyword that specifies input griddata + arrays should be written to layered ascii output files. + nlay : integer + * nlay (integer) is the number of layers in the model grid. + nrow : integer + * nrow (integer) is the number of rows in the model grid. + ncol : integer + * ncol (integer) is the number of columns in the model grid. + delr : [double] + * delr (double) is the column spacing in the row direction. + delc : [double] + * delc (double) is the row spacing in the column direction. + top : [double] + * top (double) is the top elevation for each cell in the top model + layer. + botm : [double] + * botm (double) is the bottom elevation for each cell. + idomain : [integer] + * idomain (integer) is an optional array that characterizes the + existence status of a cell. If the IDOMAIN array is not specified, + then all model cells exist within the solution. If the IDOMAIN value + for a cell is 0, the cell does not exist in the simulation. Input and + output values will be read and written for the cell, but internal to + the program, the cell is excluded from the solution. If the IDOMAIN + value for a cell is 1, the cell exists in the simulation. If the + IDOMAIN value for a cell is -1, the cell does not exist in the + simulation. Furthermore, the first existing cell above will be + connected to the first existing cell below. This type of cell is + referred to as a "vertical pass through" cell. + filename : String + File name for this package. + pname : String + Package name for this package. + parent_file : MFPackage + Parent package file that references this package. Only needed for + utility packages (mfutl*). For example, mfutllaktab package must have + a mfgwflak package parent_file. + + """ + + delr = ArrayTemplateGenerator(("prt6", "dis", "griddata", "delr")) + delc = ArrayTemplateGenerator(("prt6", "dis", "griddata", "delc")) + top = ArrayTemplateGenerator(("prt6", "dis", "griddata", "top")) + botm = ArrayTemplateGenerator(("prt6", "dis", "griddata", "botm")) + idomain = ArrayTemplateGenerator(("prt6", "dis", "griddata", "idomain")) + package_abbr = "prtdis" + _package_type = "dis" + dfn_file_name = "prt-dis.dfn" + + dfn = [ + [ + "header", + ], + [ + "block options", + "name length_units", + "type string", + "reader urword", + "optional true", + ], + [ + "block options", + "name nogrb", + "type keyword", + "reader urword", + "optional true", + ], + [ + "block options", + "name xorigin", + "type double precision", + "reader urword", + "optional true", + ], + [ + "block options", + "name yorigin", + "type double precision", + "reader urword", + "optional true", + ], + [ + "block options", + "name angrot", + "type double precision", + "reader urword", + "optional true", + ], + [ + "block options", + "name export_array_ascii", + "type keyword", + "reader urword", + "optional true", + "mf6internal export_ascii", + ], + [ + "block dimensions", + "name nlay", + "type integer", + "reader urword", + "optional false", + "default_value 1", + ], + [ + "block dimensions", + "name nrow", + "type integer", + "reader urword", + "optional false", + "default_value 2", + ], + [ + "block dimensions", + "name ncol", + "type integer", + "reader urword", + "optional false", + "default_value 2", + ], + [ + "block griddata", + "name delr", + "type double precision", + "shape (ncol)", + "reader readarray", + "default_value 1.0", + ], + [ + "block griddata", + "name delc", + "type double precision", + "shape (nrow)", + "reader readarray", + "default_value 1.0", + ], + [ + "block griddata", + "name top", + "type double precision", + "shape (ncol, nrow)", + "reader readarray", + "default_value 1.0", + ], + [ + "block griddata", + "name botm", + "type double precision", + "shape (ncol, nrow, nlay)", + "reader readarray", + "layered true", + "default_value 0.", + ], + [ + "block griddata", + "name idomain", + "type integer", + "shape (ncol, nrow, nlay)", + "reader readarray", + "layered true", + "optional true", + ], + ] + + def __init__( + self, + model, + loading_package=False, + length_units=None, + nogrb=None, + xorigin=None, + yorigin=None, + angrot=None, + export_array_ascii=None, + nlay=1, + nrow=2, + ncol=2, + delr=1.0, + delc=1.0, + top=1.0, + botm=0.0, + idomain=None, + filename=None, + pname=None, + **kwargs, + ): + super().__init__( + model, "dis", filename, pname, loading_package, **kwargs + ) + + # set up variables + self.length_units = self.build_mfdata("length_units", length_units) + self.nogrb = self.build_mfdata("nogrb", nogrb) + self.xorigin = self.build_mfdata("xorigin", xorigin) + self.yorigin = self.build_mfdata("yorigin", yorigin) + self.angrot = self.build_mfdata("angrot", angrot) + self.export_array_ascii = self.build_mfdata( + "export_array_ascii", export_array_ascii + ) + self.nlay = self.build_mfdata("nlay", nlay) + self.nrow = self.build_mfdata("nrow", nrow) + self.ncol = self.build_mfdata("ncol", ncol) + self.delr = self.build_mfdata("delr", delr) + self.delc = self.build_mfdata("delc", delc) + self.top = self.build_mfdata("top", top) + self.botm = self.build_mfdata("botm", botm) + self.idomain = self.build_mfdata("idomain", idomain) + self._init_complete = True diff --git a/flopy/mf6/modflow/mfprtdisv.py b/flopy/mf6/modflow/mfprtdisv.py new file mode 100644 index 000000000..43b68ab21 --- /dev/null +++ b/flopy/mf6/modflow/mfprtdisv.py @@ -0,0 +1,352 @@ +# DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY +# mf6/utils/createpackages.py +# FILE created on May 23, 2024 14:30:07 UTC +from .. import mfpackage +from ..data.mfdatautil import ArrayTemplateGenerator, ListTemplateGenerator + + +class ModflowPrtdisv(mfpackage.MFPackage): + """ + ModflowPrtdisv defines a disv package within a prt6 model. + + Parameters + ---------- + model : MFModel + Model that this package is a part of. Package is automatically + added to model when it is initialized. + loading_package : bool + Do not set this parameter. It is intended for debugging and internal + processing purposes only. + length_units : string + * length_units (string) is the length units used for this model. Values + can be "FEET", "METERS", or "CENTIMETERS". If not specified, the + default is "UNKNOWN". + nogrb : boolean + * nogrb (boolean) keyword to deactivate writing of the binary grid + file. + xorigin : double + * xorigin (double) x-position of the origin used for model grid + vertices. This value should be provided in a real-world coordinate + system. A default value of zero is assigned if not specified. The + value for XORIGIN does not affect the model simulation, but it is + written to the binary grid file so that postprocessors can locate the + grid in space. + yorigin : double + * yorigin (double) y-position of the origin used for model grid + vertices. This value should be provided in a real-world coordinate + system. If not specified, then a default value equal to zero is used. + The value for YORIGIN does not affect the model simulation, but it is + written to the binary grid file so that postprocessors can locate the + grid in space. + angrot : double + * angrot (double) counter-clockwise rotation angle (in degrees) of the + model grid coordinate system relative to a real-world coordinate + system. If not specified, then a default value of 0.0 is assigned. + The value for ANGROT does not affect the model simulation, but it is + written to the binary grid file so that postprocessors can locate the + grid in space. + export_array_ascii : boolean + * export_array_ascii (boolean) keyword that specifies input griddata + arrays should be written to layered ascii output files. + nlay : integer + * nlay (integer) is the number of layers in the model grid. + ncpl : integer + * ncpl (integer) is the number of cells per layer. This is a constant + value for the grid and it applies to all layers. + nvert : integer + * nvert (integer) is the total number of (x, y) vertex pairs used to + characterize the horizontal configuration of the model grid. + top : [double] + * top (double) is the top elevation for each cell in the top model + layer. + botm : [double] + * botm (double) is the bottom elevation for each cell. + idomain : [integer] + * idomain (integer) is an optional array that characterizes the + existence status of a cell. If the IDOMAIN array is not specified, + then all model cells exist within the solution. If the IDOMAIN value + for a cell is 0, the cell does not exist in the simulation. Input and + output values will be read and written for the cell, but internal to + the program, the cell is excluded from the solution. If the IDOMAIN + value for a cell is 1, the cell exists in the simulation. If the + IDOMAIN value for a cell is -1, the cell does not exist in the + simulation. Furthermore, the first existing cell above will be + connected to the first existing cell below. This type of cell is + referred to as a "vertical pass through" cell. + vertices : [iv, xv, yv] + * iv (integer) is the vertex number. Records in the VERTICES block must + be listed in consecutive order from 1 to NVERT. This argument is an + index variable, which means that it should be treated as zero-based + when working with FloPy and Python. Flopy will automatically subtract + one when loading index variables and add one when writing index + variables. + * xv (double) is the x-coordinate for the vertex. + * yv (double) is the y-coordinate for the vertex. + cell2d : [icell2d, xc, yc, ncvert, icvert] + * icell2d (integer) is the CELL2D number. Records in the CELL2D block + must be listed in consecutive order from the first to the last. This + argument is an index variable, which means that it should be treated + as zero-based when working with FloPy and Python. Flopy will + automatically subtract one when loading index variables and add one + when writing index variables. + * xc (double) is the x-coordinate for the cell center. + * yc (double) is the y-coordinate for the cell center. + * ncvert (integer) is the number of vertices required to define the + cell. There may be a different number of vertices for each cell. + * icvert (integer) is an array of integer values containing vertex + numbers (in the VERTICES block) used to define the cell. Vertices + must be listed in clockwise order. Cells that are connected must + share vertices. This argument is an index variable, which means that + it should be treated as zero-based when working with FloPy and + Python. Flopy will automatically subtract one when loading index + variables and add one when writing index variables. + filename : String + File name for this package. + pname : String + Package name for this package. + parent_file : MFPackage + Parent package file that references this package. Only needed for + utility packages (mfutl*). For example, mfutllaktab package must have + a mfgwflak package parent_file. + + """ + + top = ArrayTemplateGenerator(("prt6", "disv", "griddata", "top")) + botm = ArrayTemplateGenerator(("prt6", "disv", "griddata", "botm")) + idomain = ArrayTemplateGenerator(("prt6", "disv", "griddata", "idomain")) + vertices = ListTemplateGenerator(("prt6", "disv", "vertices", "vertices")) + cell2d = ListTemplateGenerator(("prt6", "disv", "cell2d", "cell2d")) + package_abbr = "prtdisv" + _package_type = "disv" + dfn_file_name = "prt-disv.dfn" + + dfn = [ + [ + "header", + ], + [ + "block options", + "name length_units", + "type string", + "reader urword", + "optional true", + ], + [ + "block options", + "name nogrb", + "type keyword", + "reader urword", + "optional true", + ], + [ + "block options", + "name xorigin", + "type double precision", + "reader urword", + "optional true", + ], + [ + "block options", + "name yorigin", + "type double precision", + "reader urword", + "optional true", + ], + [ + "block options", + "name angrot", + "type double precision", + "reader urword", + "optional true", + ], + [ + "block options", + "name export_array_ascii", + "type keyword", + "reader urword", + "optional true", + "mf6internal export_ascii", + ], + [ + "block dimensions", + "name nlay", + "type integer", + "reader urword", + "optional false", + ], + [ + "block dimensions", + "name ncpl", + "type integer", + "reader urword", + "optional false", + ], + [ + "block dimensions", + "name nvert", + "type integer", + "reader urword", + "optional false", + ], + [ + "block griddata", + "name top", + "type double precision", + "shape (ncpl)", + "reader readarray", + ], + [ + "block griddata", + "name botm", + "type double precision", + "shape (ncpl, nlay)", + "reader readarray", + "layered true", + ], + [ + "block griddata", + "name idomain", + "type integer", + "shape (ncpl, nlay)", + "reader readarray", + "layered true", + "optional true", + ], + [ + "block vertices", + "name vertices", + "type recarray iv xv yv", + "shape (nvert)", + "reader urword", + "optional false", + ], + [ + "block vertices", + "name iv", + "type integer", + "in_record true", + "tagged false", + "reader urword", + "optional false", + "numeric_index true", + ], + [ + "block vertices", + "name xv", + "type double precision", + "in_record true", + "tagged false", + "reader urword", + "optional false", + ], + [ + "block vertices", + "name yv", + "type double precision", + "in_record true", + "tagged false", + "reader urword", + "optional false", + ], + [ + "block cell2d", + "name cell2d", + "type recarray icell2d xc yc ncvert icvert", + "shape (ncpl)", + "reader urword", + "optional false", + ], + [ + "block cell2d", + "name icell2d", + "type integer", + "in_record true", + "tagged false", + "reader urword", + "optional false", + "numeric_index true", + ], + [ + "block cell2d", + "name xc", + "type double precision", + "in_record true", + "tagged false", + "reader urword", + "optional false", + ], + [ + "block cell2d", + "name yc", + "type double precision", + "in_record true", + "tagged false", + "reader urword", + "optional false", + ], + [ + "block cell2d", + "name ncvert", + "type integer", + "in_record true", + "tagged false", + "reader urword", + "optional false", + ], + [ + "block cell2d", + "name icvert", + "type integer", + "shape (ncvert)", + "in_record true", + "tagged false", + "reader urword", + "optional false", + "numeric_index true", + ], + ] + + def __init__( + self, + model, + loading_package=False, + length_units=None, + nogrb=None, + xorigin=None, + yorigin=None, + angrot=None, + export_array_ascii=None, + nlay=None, + ncpl=None, + nvert=None, + top=None, + botm=None, + idomain=None, + vertices=None, + cell2d=None, + filename=None, + pname=None, + **kwargs, + ): + super().__init__( + model, "disv", filename, pname, loading_package, **kwargs + ) + + # set up variables + self.length_units = self.build_mfdata("length_units", length_units) + self.nogrb = self.build_mfdata("nogrb", nogrb) + self.xorigin = self.build_mfdata("xorigin", xorigin) + self.yorigin = self.build_mfdata("yorigin", yorigin) + self.angrot = self.build_mfdata("angrot", angrot) + self.export_array_ascii = self.build_mfdata( + "export_array_ascii", export_array_ascii + ) + self.nlay = self.build_mfdata("nlay", nlay) + self.ncpl = self.build_mfdata("ncpl", ncpl) + self.nvert = self.build_mfdata("nvert", nvert) + self.top = self.build_mfdata("top", top) + self.botm = self.build_mfdata("botm", botm) + self.idomain = self.build_mfdata("idomain", idomain) + self.vertices = self.build_mfdata("vertices", vertices) + self.cell2d = self.build_mfdata("cell2d", cell2d) + self._init_complete = True diff --git a/flopy/mf6/modflow/mfprtfmi.py b/flopy/mf6/modflow/mfprtfmi.py new file mode 100644 index 000000000..134ae6c3c --- /dev/null +++ b/flopy/mf6/modflow/mfprtfmi.py @@ -0,0 +1,113 @@ +# DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY +# mf6/utils/createpackages.py +# FILE created on May 23, 2024 14:30:07 UTC +from .. import mfpackage +from ..data.mfdatautil import ListTemplateGenerator + + +class ModflowPrtfmi(mfpackage.MFPackage): + """ + ModflowPrtfmi defines a fmi package within a prt6 model. + + Parameters + ---------- + model : MFModel + Model that this package is a part of. Package is automatically + added to model when it is initialized. + loading_package : bool + Do not set this parameter. It is intended for debugging and internal + processing purposes only. + save_flows : boolean + * save_flows (boolean) keyword to indicate that FMI flow terms will be + written to the file specified with "BUDGET FILEOUT" in Output + Control. + packagedata : [flowtype, fname] + * flowtype (string) is the word GWFBUDGET or GWFHEAD. If GWFBUDGET is + specified, then the corresponding file must be a budget file from a + previous GWF Model run. + * fname (string) is the name of the file containing flows. The path to + the file should be included if the file is not located in the folder + where the program was run. + filename : String + File name for this package. + pname : String + Package name for this package. + parent_file : MFPackage + Parent package file that references this package. Only needed for + utility packages (mfutl*). For example, mfutllaktab package must have + a mfgwflak package parent_file. + + """ + + packagedata = ListTemplateGenerator( + ("prt6", "fmi", "packagedata", "packagedata") + ) + package_abbr = "prtfmi" + _package_type = "fmi" + dfn_file_name = "prt-fmi.dfn" + + dfn = [ + [ + "header", + ], + [ + "block options", + "name save_flows", + "type keyword", + "reader urword", + "optional true", + ], + [ + "block packagedata", + "name packagedata", + "type recarray flowtype filein fname", + "reader urword", + "optional false", + ], + [ + "block packagedata", + "name flowtype", + "in_record true", + "type string", + "tagged false", + "reader urword", + ], + [ + "block packagedata", + "name filein", + "type keyword", + "shape", + "in_record true", + "reader urword", + "tagged true", + "optional false", + ], + [ + "block packagedata", + "name fname", + "in_record true", + "type string", + "preserve_case true", + "tagged false", + "reader urword", + ], + ] + + def __init__( + self, + model, + loading_package=False, + save_flows=None, + packagedata=None, + filename=None, + pname=None, + **kwargs, + ): + super().__init__( + model, "fmi", filename, pname, loading_package, **kwargs + ) + + # set up variables + self.save_flows = self.build_mfdata("save_flows", save_flows) + self.packagedata = self.build_mfdata("packagedata", packagedata) + self._init_complete = True diff --git a/flopy/mf6/modflow/mfprtmip.py b/flopy/mf6/modflow/mfprtmip.py new file mode 100644 index 000000000..34d2c1d01 --- /dev/null +++ b/flopy/mf6/modflow/mfprtmip.py @@ -0,0 +1,130 @@ +# DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY +# mf6/utils/createpackages.py +# FILE created on May 23, 2024 14:30:07 UTC +from .. import mfpackage +from ..data.mfdatautil import ArrayTemplateGenerator + + +class ModflowPrtmip(mfpackage.MFPackage): + """ + ModflowPrtmip defines a mip package within a prt6 model. + + Parameters + ---------- + model : MFModel + Model that this package is a part of. Package is automatically + added to model when it is initialized. + loading_package : bool + Do not set this parameter. It is intended for debugging and internal + processing purposes only. + export_array_ascii : boolean + * export_array_ascii (boolean) keyword that specifies input griddata + arrays should be written to layered ascii output files. + porosity : [double] + * porosity (double) is the aquifer porosity. + retfactor : [double] + * retfactor (double) is a real value by which velocity is divided + within a given cell. RETFACTOR can be used to account for solute + retardation, i.e., the apparent effect of linear sorption on the + velocity of particles that track solute advection. RETFACTOR may be + assigned any real value. A RETFACTOR value greater than 1 represents + particle retardation (slowing), and a value of 1 represents no + retardation. The effect of specifying a RETFACTOR value for each cell + is the same as the effect of directly multiplying the POROSITY in + each cell by the proposed RETFACTOR value for each cell. RETFACTOR + allows conceptual isolation of effects such as retardation from the + effect of porosity. The default value is 1. + izone : [integer] + * izone (integer) is an integer zone number assigned to each cell. + IZONE may be positive, negative, or zero. The current cell's zone + number is recorded with each particle track datum. If a PRP package's + ISTOPZONE option is set to any value other than zero, particles + released by that PRP Package terminate if they enter a cell whose + IZONE value matches ISTOPZONE. If ISTOPZONE is not specified or is + set to zero in a PRP Package, IZONE has no effect on the termination + of particles released by that PRP Package. Each PRP Package may + configure a single ISTOPZONE value. + filename : String + File name for this package. + pname : String + Package name for this package. + parent_file : MFPackage + Parent package file that references this package. Only needed for + utility packages (mfutl*). For example, mfutllaktab package must have + a mfgwflak package parent_file. + + """ + + porosity = ArrayTemplateGenerator(("prt6", "mip", "griddata", "porosity")) + retfactor = ArrayTemplateGenerator( + ("prt6", "mip", "griddata", "retfactor") + ) + izone = ArrayTemplateGenerator(("prt6", "mip", "griddata", "izone")) + package_abbr = "prtmip" + _package_type = "mip" + dfn_file_name = "prt-mip.dfn" + + dfn = [ + [ + "header", + ], + [ + "block options", + "name export_array_ascii", + "type keyword", + "reader urword", + "optional true", + "mf6internal export_ascii", + ], + [ + "block griddata", + "name porosity", + "type double precision", + "shape (nodes)", + "reader readarray", + "layered true", + ], + [ + "block griddata", + "name retfactor", + "type double precision", + "shape (nodes)", + "reader readarray", + "layered true", + "optional true", + ], + [ + "block griddata", + "name izone", + "type integer", + "shape (nodes)", + "reader readarray", + "layered true", + "optional true", + ], + ] + + def __init__( + self, + model, + loading_package=False, + export_array_ascii=None, + porosity=None, + retfactor=None, + izone=None, + filename=None, + pname=None, + **kwargs, + ): + super().__init__( + model, "mip", filename, pname, loading_package, **kwargs + ) + + # set up variables + self.export_array_ascii = self.build_mfdata( + "export_array_ascii", export_array_ascii + ) + self.porosity = self.build_mfdata("porosity", porosity) + self.retfactor = self.build_mfdata("retfactor", retfactor) + self.izone = self.build_mfdata("izone", izone) + self._init_complete = True diff --git a/flopy/mf6/modflow/mfprtnam.py b/flopy/mf6/modflow/mfprtnam.py new file mode 100644 index 000000000..bb875d582 --- /dev/null +++ b/flopy/mf6/modflow/mfprtnam.py @@ -0,0 +1,163 @@ +# DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY +# mf6/utils/createpackages.py +# FILE created on May 23, 2024 14:30:07 UTC +from .. import mfpackage +from ..data.mfdatautil import ListTemplateGenerator + + +class ModflowPrtnam(mfpackage.MFPackage): + """ + ModflowPrtnam defines a nam package within a prt6 model. + + Parameters + ---------- + model : MFModel + Model that this package is a part of. Package is automatically + added to model when it is initialized. + loading_package : bool + Do not set this parameter. It is intended for debugging and internal + processing purposes only. + list : string + * list (string) is name of the listing file to create for this PRT + model. If not specified, then the name of the list file will be the + basename of the PRT model name file and the '.lst' extension. For + example, if the PRT name file is called "my.model.nam" then the list + file will be called "my.model.lst". + print_input : boolean + * print_input (boolean) keyword to indicate that the list of all model + stress package information will be written to the listing file + immediately after it is read. + print_flows : boolean + * print_flows (boolean) keyword to indicate that the list of all model + package flow rates will be printed to the listing file for every + stress period time step in which "BUDGET PRINT" is specified in + Output Control. If there is no Output Control option and + "PRINT_FLOWS" is specified, then flow rates are printed for the last + time step of each stress period. + save_flows : boolean + * save_flows (boolean) keyword to indicate that all model package flow + terms will be written to the file specified with "BUDGET FILEOUT" in + Output Control. + packages : [ftype, fname, pname] + * ftype (string) is the file type, which must be one of the following + character values shown in table ref{table:ftype-prt}. Ftype may be + entered in any combination of uppercase and lowercase. + * fname (string) is the name of the file containing the package input. + The path to the file should be included if the file is not located in + the folder where the program was run. + * pname (string) is the user-defined name for the package. PNAME is + restricted to 16 characters. No spaces are allowed in PNAME. PNAME + character values are read and stored by the program for stress + packages only. These names may be useful for labeling purposes when + multiple stress packages of the same type are located within a single + PRT Model. If PNAME is specified for a stress package, then PNAME + will be used in the flow budget table in the listing file; it will + also be used for the text entry in the cell-by-cell budget file. + PNAME is case insensitive and is stored in all upper case letters. + filename : String + File name for this package. + pname : String + Package name for this package. + parent_file : MFPackage + Parent package file that references this package. Only needed for + utility packages (mfutl*). For example, mfutllaktab package must have + a mfgwflak package parent_file. + + """ + + packages = ListTemplateGenerator(("prt6", "nam", "packages", "packages")) + package_abbr = "prtnam" + _package_type = "nam" + dfn_file_name = "prt-nam.dfn" + + dfn = [ + [ + "header", + ], + [ + "block options", + "name list", + "type string", + "reader urword", + "optional true", + ], + [ + "block options", + "name print_input", + "type keyword", + "reader urword", + "optional true", + ], + [ + "block options", + "name print_flows", + "type keyword", + "reader urword", + "optional true", + ], + [ + "block options", + "name save_flows", + "type keyword", + "reader urword", + "optional true", + ], + [ + "block packages", + "name packages", + "type recarray ftype fname pname", + "reader urword", + "optional false", + ], + [ + "block packages", + "name ftype", + "in_record true", + "type string", + "tagged false", + "reader urword", + ], + [ + "block packages", + "name fname", + "in_record true", + "type string", + "preserve_case true", + "tagged false", + "reader urword", + ], + [ + "block packages", + "name pname", + "in_record true", + "type string", + "tagged false", + "reader urword", + "optional true", + ], + ] + + def __init__( + self, + model, + loading_package=False, + list=None, + print_input=None, + print_flows=None, + save_flows=None, + packages=None, + filename=None, + pname=None, + **kwargs, + ): + super().__init__( + model, "nam", filename, pname, loading_package, **kwargs + ) + + # set up variables + self.list = self.build_mfdata("list", list) + self.print_input = self.build_mfdata("print_input", print_input) + self.print_flows = self.build_mfdata("print_flows", print_flows) + self.save_flows = self.build_mfdata("save_flows", save_flows) + self.packages = self.build_mfdata("packages", packages) + self._init_complete = True diff --git a/flopy/mf6/modflow/mfprtoc.py b/flopy/mf6/modflow/mfprtoc.py new file mode 100644 index 000000000..511c3006f --- /dev/null +++ b/flopy/mf6/modflow/mfprtoc.py @@ -0,0 +1,550 @@ +# DO NOT MODIFY THIS FILE DIRECTLY. THIS FILE MUST BE CREATED BY +# mf6/utils/createpackages.py +# FILE created on May 23, 2024 14:30:07 UTC +from .. import mfpackage +from ..data.mfdatautil import ListTemplateGenerator + + +class ModflowPrtoc(mfpackage.MFPackage): + """ + ModflowPrtoc defines a oc package within a prt6 model. + + Parameters + ---------- + model : MFModel + Model that this package is a part of. Package is automatically + added to model when it is initialized. + loading_package : bool + Do not set this parameter. It is intended for debugging and internal + processing purposes only. + budget_filerecord : [budgetfile] + * budgetfile (string) name of the output file to write budget + information. + budgetcsv_filerecord : [budgetcsvfile] + * budgetcsvfile (string) name of the comma-separated value (CSV) output + file to write budget summary information. A budget summary record + will be written to this file for each time step of the simulation. + track_filerecord : [trackfile] + * trackfile (string) name of the binary output file to write tracking + information. + trackcsv_filerecord : [trackcsvfile] + * trackcsvfile (string) name of the comma-separated value (CSV) file to + write tracking information. + track_release : boolean + * track_release (boolean) keyword to indicate that particle tracking + output is to be written when a particle is released + track_exit : boolean + * track_exit (boolean) keyword to indicate that particle tracking + output is to be written when a particle exits a cell + track_timestep : boolean + * track_timestep (boolean) keyword to indicate that particle tracking + output is to be written at the end of each time step + track_terminate : boolean + * track_terminate (boolean) keyword to indicate that particle tracking + output is to be written when a particle terminates for any reason + track_weaksink : boolean + * track_weaksink (boolean) keyword to indicate that particle tracking + output is to be written when a particle exits a weak sink (a cell + which removes some but not all inflow from adjacent cells) + track_usertime : boolean + * track_usertime (boolean) keyword to indicate that particle tracking + output is to be written at user-specified times, provided as double + precision values to the TRACK_TIMES or TRACK_TIMESFILE options + track_timesrecord : [times] + * times (double) times to track, relative to the beginning of the + simulation. + track_timesfilerecord : [timesfile] + * timesfile (string) name of the tracking times file + saverecord : [rtype, ocsetting] + * rtype (string) type of information to save or print. Can only be + BUDGET. + * ocsetting (keystring) specifies the steps for which the data will be + saved. + all : [keyword] + * all (keyword) keyword to indicate save for all time steps in + period. + first : [keyword] + * first (keyword) keyword to indicate save for first step in + period. This keyword may be used in conjunction with other + keywords to print or save results for multiple time steps. + last : [keyword] + * last (keyword) keyword to indicate save for last step in + period. This keyword may be used in conjunction with other + keywords to print or save results for multiple time steps. + frequency : [integer] + * frequency (integer) save at the specified time step + frequency. This keyword may be used in conjunction with other + keywords to print or save results for multiple time steps. + steps : [integer] + * steps (integer) save for each step specified in STEPS. This + keyword may be used in conjunction with other keywords to + print or save results for multiple time steps. + printrecord : [rtype, ocsetting] + * rtype (string) type of information to save or print. Can only be + BUDGET. + * ocsetting (keystring) specifies the steps for which the data will be + saved. + all : [keyword] + * all (keyword) keyword to indicate save for all time steps in + period. + first : [keyword] + * first (keyword) keyword to indicate save for first step in + period. This keyword may be used in conjunction with other + keywords to print or save results for multiple time steps. + last : [keyword] + * last (keyword) keyword to indicate save for last step in + period. This keyword may be used in conjunction with other + keywords to print or save results for multiple time steps. + frequency : [integer] + * frequency (integer) save at the specified time step + frequency. This keyword may be used in conjunction with other + keywords to print or save results for multiple time steps. + steps : [integer] + * steps (integer) save for each step specified in STEPS. This + keyword may be used in conjunction with other keywords to + print or save results for multiple time steps. + filename : String + File name for this package. + pname : String + Package name for this package. + parent_file : MFPackage + Parent package file that references this package. Only needed for + utility packages (mfutl*). For example, mfutllaktab package must have + a mfgwflak package parent_file. + + """ + + budget_filerecord = ListTemplateGenerator( + ("prt6", "oc", "options", "budget_filerecord") + ) + budgetcsv_filerecord = ListTemplateGenerator( + ("prt6", "oc", "options", "budgetcsv_filerecord") + ) + track_filerecord = ListTemplateGenerator( + ("prt6", "oc", "options", "track_filerecord") + ) + trackcsv_filerecord = ListTemplateGenerator( + ("prt6", "oc", "options", "trackcsv_filerecord") + ) + track_timesrecord = ListTemplateGenerator( + ("prt6", "oc", "options", "track_timesrecord") + ) + track_timesfilerecord = ListTemplateGenerator( + ("prt6", "oc", "options", "track_timesfilerecord") + ) + saverecord = ListTemplateGenerator(("prt6", "oc", "period", "saverecord")) + printrecord = ListTemplateGenerator( + ("prt6", "oc", "period", "printrecord") + ) + package_abbr = "prtoc" + _package_type = "oc" + dfn_file_name = "prt-oc.dfn" + + dfn = [ + [ + "header", + ], + [ + "block options", + "name budget_filerecord", + "type record budget fileout budgetfile", + "shape", + "reader urword", + "tagged true", + "optional true", + ], + [ + "block options", + "name budget", + "type keyword", + "shape", + "in_record true", + "reader urword", + "tagged true", + "optional false", + ], + [ + "block options", + "name fileout", + "type keyword", + "shape", + "in_record true", + "reader urword", + "tagged true", + "optional false", + ], + [ + "block options", + "name budgetfile", + "type string", + "preserve_case true", + "shape", + "in_record true", + "reader urword", + "tagged false", + "optional false", + ], + [ + "block options", + "name budgetcsv_filerecord", + "type record budgetcsv fileout budgetcsvfile", + "shape", + "reader urword", + "tagged true", + "optional true", + ], + [ + "block options", + "name budgetcsv", + "type keyword", + "shape", + "in_record true", + "reader urword", + "tagged true", + "optional false", + ], + [ + "block options", + "name budgetcsvfile", + "type string", + "preserve_case true", + "shape", + "in_record true", + "reader urword", + "tagged false", + "optional false", + ], + [ + "block options", + "name track_filerecord", + "type record track fileout trackfile", + "shape", + "reader urword", + "tagged true", + "optional true", + ], + [ + "block options", + "name track", + "type keyword", + "shape", + "in_record true", + "reader urword", + "tagged true", + "optional false", + ], + [ + "block options", + "name trackfile", + "type string", + "preserve_case true", + "shape", + "in_record true", + "reader urword", + "tagged false", + "optional false", + ], + [ + "block options", + "name trackcsv_filerecord", + "type record trackcsv fileout trackcsvfile", + "shape", + "reader urword", + "tagged true", + "optional true", + ], + [ + "block options", + "name trackcsv", + "type keyword", + "shape", + "in_record true", + "reader urword", + "tagged true", + "optional false", + ], + [ + "block options", + "name trackcsvfile", + "type string", + "preserve_case true", + "shape", + "in_record true", + "reader urword", + "tagged false", + "optional false", + ], + [ + "block options", + "name track_release", + "type keyword", + "reader urword", + "optional true", + ], + [ + "block options", + "name track_exit", + "type keyword", + "reader urword", + "optional true", + ], + [ + "block options", + "name track_timestep", + "type keyword", + "reader urword", + "optional true", + ], + [ + "block options", + "name track_terminate", + "type keyword", + "reader urword", + "optional true", + ], + [ + "block options", + "name track_weaksink", + "type keyword", + "reader urword", + "optional true", + ], + [ + "block options", + "name track_usertime", + "type keyword", + "reader urword", + "optional true", + ], + [ + "block options", + "name track_timesrecord", + "type record track_times times", + "shape", + "reader urword", + "tagged true", + "optional true", + ], + [ + "block options", + "name track_times", + "type keyword", + "reader urword", + "in_record true", + "tagged true", + "shape", + ], + [ + "block options", + "name times", + "type double precision", + "shape (unknown)", + "reader urword", + "in_record true", + "tagged false", + "repeating true", + ], + [ + "block options", + "name track_timesfilerecord", + "type record track_timesfile timesfile", + "shape", + "reader urword", + "tagged true", + "optional true", + ], + [ + "block options", + "name track_timesfile", + "type keyword", + "reader urword", + "in_record true", + "tagged true", + "shape", + ], + [ + "block options", + "name timesfile", + "type string", + "preserve_case true", + "shape", + "in_record true", + "reader urword", + "tagged false", + "optional false", + ], + [ + "block period", + "name iper", + "type integer", + "block_variable True", + "in_record true", + "tagged false", + "shape", + "valid", + "reader urword", + "optional false", + ], + [ + "block period", + "name saverecord", + "type record save rtype ocsetting", + "shape", + "reader urword", + "tagged false", + "optional true", + ], + [ + "block period", + "name save", + "type keyword", + "shape", + "in_record true", + "reader urword", + "tagged true", + "optional false", + ], + [ + "block period", + "name printrecord", + "type record print rtype ocsetting", + "shape", + "reader urword", + "tagged false", + "optional true", + ], + [ + "block period", + "name print", + "type keyword", + "shape", + "in_record true", + "reader urword", + "tagged true", + "optional false", + ], + [ + "block period", + "name rtype", + "type string", + "shape", + "in_record true", + "reader urword", + "tagged false", + "optional false", + ], + [ + "block period", + "name ocsetting", + "type keystring all first last frequency steps", + "shape", + "tagged false", + "in_record true", + "reader urword", + ], + [ + "block period", + "name all", + "type keyword", + "shape", + "in_record true", + "reader urword", + ], + [ + "block period", + "name first", + "type keyword", + "shape", + "in_record true", + "reader urword", + ], + [ + "block period", + "name last", + "type keyword", + "shape", + "in_record true", + "reader urword", + ], + [ + "block period", + "name frequency", + "type integer", + "shape", + "tagged true", + "in_record true", + "reader urword", + ], + [ + "block period", + "name steps", + "type integer", + "shape (