fix final index

vidboda · vidboda · commit af66b6a3b50c · 2025-01-29T12:05:09.000+01:00
diff --git a/modules/sambambaIndex.wdl b/modules/sambambaIndex.wdl
@@ -45,6 +45,6 @@ task sambambaIndex {
 		requested_memory_mb_per_core: "~{Memory}"
 	}
 	output {
-		File bamIndex = "~{OutDir}~{OutputDirSampleID}/~{WorkflowType}/~{SampleID}.bam.bai"
+		File bamIndex = "~{OutDir}~{OutputDirSampleID}/~{WorkflowType}/~{SampleID}~{OutFileSuffix}.bam.bai"
 	}
 }

Original file line number	Diff line number	Diff line change
`@@ -45,6 +45,6 @@ task sambambaIndex {`
`45`	`45`	`requested_memory_mb_per_core: "~{Memory}"`
`46`	`46`	`}`
`47`	`47`	`output {`
`48`		`- File bamIndex = "~{OutDir}~{OutputDirSampleID}/~{WorkflowType}/~{SampleID}.bam.bai"`
	`48`	`+ File bamIndex = "~{OutDir}~{OutputDirSampleID}/~{WorkflowType}/~{SampleID}~{OutFileSuffix}.bam.bai"`
`49`	`49`	`}`
`50`	`50`	`}`