added test for routine runs

Author: vidboda

tests/Cluster_noDB-test.conf

@@ -20,7 +20,7 @@ backend {
         submit = """
             sbatch -J ${job_name} -D ${cwd} -o ${out} -e ${err} -t ${runtime_minutes} -p ${queue} \
             ${"-c " + cpu} \
-	    --mem-per-cpu=${requested_memory_mb_per_core} \
+	          --mem-per-cpu=${requested_memory_mb_per_core} \
             --wrap "/bin/bash ${script}"
         """
         kill = "scancel ${job_id}"

tests/test_metaPanelCapture_restrained.yaml

@@ -30,6 +30,24 @@
     - path: CAD260090_VDM-4B-NS/panelCapture/CAD260090_VDM-4B-NS.vcf
       should_exist: true
 
+- name: MetaPanelCapture solo routine
+  # Overall runtime : ~ 20 min - runs a panelCapture n a coriell NS157twist sample + happy
+  tags:
+    - wf_level
+    - hg38
+    - CAD260090_VDM-4B-NS
+    - routine
+  command: nohup bash -c "source tests/func_special.sh && run_wdl_MobiDL metaPanelCapture.wdl tests/metaPanelCapture/solo_aviti_hg38_inputs.json tests/Cluster_noDB-test.conf && happy CAD260090_VDM-4B-NS/panelCapture/CAD260090_VDM-4B-NS.dv.vcf /bioinfo/refData/annotations/Coriell/NA24385/hg38/bed_intersects/NA24385_noinconsistent_NS_157_twist_20250515.bed /bioinfo/refData/genomes/GRCh38/no_alt/hg38.fa /bioinfo/refData/annotations/Coriell/NA24385/hg38/HG002_GRCh38_1_22_v4.2.1_benchmark.decomposed.vcf.gz && cat happy_dir/CAD260090_VDM-4B-NS.dv.summary.csv | cut -d ',' -f1,2,3,4,5,7,11,12,14 | column -s, -t"
+  stdout:
+    contains:
+      - "workflow finished with status 'Succeeded'"
+  files:
+    - path: CAD260090_VDM-4B-NS/panelCapture/CAD260090_VDM-4B-NS.vcf
+      should_exist: true
+    - path: happy_dir/CAD260090_VDM-4B-NS.dv.summary.csv
+      should_exist: true
+      md5sum: 6475959888c7e99ce5ef57e7239085b4
+
 # - name: MetaPanelCapture different BED
 #   # Overall runtime : ~ 20 min
 #   tags: