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%%% ====================================================================
%%% BibTeX-file{
%%% author = "Gerry Murray",
%%% version = "1.2",
%%% date = "2 April 2012",
%%% filename = "acmsmall-sample-bibfile.bib",
%%% address = "ACM, NY",
%%% email = "murray at hq.acm.org",
%%% codetable = "ISO/ASCII",
%%% keywords = "ACM Reference Format, bibliography, citation, references",
%%% supported = "yes",
%%% docstring = "This BibTeX database file contains 'bibdata' entries
%%% that 'match' the examples provided in the Specifications Document
%%% AND, also, 'legacy'-type bibs. It should assist authors in
%%% choosing the 'correct' at-bibtype and necessary bib-fields
%%% so as to obtain the appropriate ACM Reference Format output.
%%% It also contains many 'Standard Abbreviations'. "
%%% }
%%% ====================================================================
% Journals
% First the Full Name is given, then the abbreviation used in the AMS Math
% Reviews, with an indication if it could not be found there.
% Note the 2nd overwrites the 1st, so swap them if you want the full name.
%{AMS}
@String{AMSTrans = "American Mathematical Society Translations" }
@String{AMSTrans = "Amer. Math. Soc. Transl." }
@String{BullAMS = "Bulletin of the American Mathematical Society" }
@String{BullAMS = "Bull. Amer. Math. Soc." }
@String{ProcAMS = "Proceedings of the American Mathematical Society" }
@String{ProcAMS = "Proc. Amer. Math. Soc." }
@String{TransAMS = "Transactions of the American Mathematical Society" }
@String{TransAMS = "Trans. Amer. Math. Soc." }
%ACM
@String{CACM = "Communications of the {ACM}" }
@String{CACM = "Commun. {ACM}" }
@String{CompServ = "Comput. Surveys" }
@String{JACM = "J. ACM" }
@String{ACMMathSoft = "{ACM} Transactions on Mathematical Software" }
@String{ACMMathSoft = "{ACM} Trans. Math. Software" }
@String{SIGNUM = "{ACM} {SIGNUM} Newsletter" }
@String{SIGNUM = "{ACM} {SIGNUM} Newslett." }
@String{AmerSocio = "American Journal of Sociology" }
@String{AmerStatAssoc = "Journal of the American Statistical Association" }
@String{AmerStatAssoc = "J. Amer. Statist. Assoc." }
@String{ApplMathComp = "Applied Mathematics and Computation" }
@String{ApplMathComp = "Appl. Math. Comput." }
@String{AmerMathMonthly = "American Mathematical Monthly" }
@String{AmerMathMonthly = "Amer. Math. Monthly" }
@String{BIT = "{BIT}" }
@String{BritStatPsych = "British Journal of Mathematical and Statistical
Psychology" }
@String{BritStatPsych = "Brit. J. Math. Statist. Psych." }
@String{CanMathBull = "Canadian Mathematical Bulletin" }
@String{CanMathBull = "Canad. Math. Bull." }
@String{CompApplMath = "Journal of Computational and Applied Mathematics" }
@String{CompApplMath = "J. Comput. Appl. Math." }
@String{CompPhys = "Journal of Computational Physics" }
@String{CompPhys = "J. Comput. Phys." }
@String{CompStruct = "Computers and Structures" }
@String{CompStruct = "Comput. \& Structures" }
@String{CompJour = "The Computer Journal" }
@String{CompJour = "Comput. J." }
@String{CompSysSci = "Journal of Computer and System Sciences" }
@String{CompSysSci = "J. Comput. System Sci." }
@String{Computing = "Computing" }
@String{ContempMath = "Contemporary Mathematics" }
@String{ContempMath = "Contemp. Math." }
@String{Crelle = "Crelle's Journal" }
@String{GiornaleMath = "Giornale di Mathematiche" }
@String{GiornaleMath = "Giorn. Mat." } % didn't find in AMS MR., ibid.
%IEEE
@String{Computer = "{IEEE} Computer" }
@String{IEEETransComp = "{IEEE} Transactions on Computers" }
@String{IEEETransComp = "{IEEE} Trans. Comput." }
@String{IEEETransAC = "{IEEE} Transactions on Automatic Control" }
@String{IEEETransAC = "{IEEE} Trans. Automat. Control" }
@String{IEEESpec = "{IEEE} Spectrum" } % didn't find in AMS MR
@String{ProcIEEE = "Proceedings of the {IEEE}" }
@String{ProcIEEE = "Proc. {IEEE}" } % didn't find in AMS MR
@String{IEEETransAeroElec = "{IEEE} Transactions on Aerospace and Electronic
Systems" }
@String{IEEETransAeroElec = "{IEEE} Trans. Aerospace Electron. Systems" }
@String{IMANumerAna = "{IMA} Journal of Numerical Analysis" }
@String{IMANumerAna = "{IMA} J. Numer. Anal." }
@String{InfProcLet = "Information Processing Letters" }
@String{InfProcLet = "Inform. Process. Lett." }
@String{InstMathApp = "Journal of the Institute of Mathematics and
its Applications" }
@String{InstMathApp = "J. Inst. Math. Appl." }
@String{IntControl = "International Journal of Control" }
@String{IntControl = "Internat. J. Control" }
@String{IntNumerEng = "International Journal for Numerical Methods in
Engineering" }
@String{IntNumerEng = "Internat. J. Numer. Methods Engrg." }
@String{IntSuper = "International Journal of Supercomputing Applications" }
@String{IntSuper = "Internat. J. Supercomputing Applic." } % didn't find
%% in AMS MR
@String{Kibernetika = "Kibernetika" }
@String{JResNatBurStand = "Journal of Research of the National Bureau
of Standards" }
@String{JResNatBurStand = "J. Res. Nat. Bur. Standards" }
@String{LinAlgApp = "Linear Algebra and its Applications" }
@String{LinAlgApp = "Linear Algebra Appl." }
@String{MathAnaAppl = "Journal of Mathematical Analysis and Applications" }
@String{MathAnaAppl = "J. Math. Anal. Appl." }
@String{MathAnnalen = "Mathematische Annalen" }
@String{MathAnnalen = "Math. Ann." }
@String{MathPhys = "Journal of Mathematical Physics" }
@String{MathPhys = "J. Math. Phys." }
@String{MathComp = "Mathematics of Computation" }
@String{MathComp = "Math. Comp." }
@String{MathScand = "Mathematica Scandinavica" }
@String{MathScand = "Math. Scand." }
@String{TablesAidsComp = "Mathematical Tables and Other Aids to Computation" }
@String{TablesAidsComp = "Math. Tables Aids Comput." }
@String{NumerMath = "Numerische Mathematik" }
@String{NumerMath = "Numer. Math." }
@String{PacificMath = "Pacific Journal of Mathematics" }
@String{PacificMath = "Pacific J. Math." }
@String{ParDistComp = "Journal of Parallel and Distributed Computing" }
@String{ParDistComp = "J. Parallel and Distrib. Comput." } % didn't find
%% in AMS MR
@String{ParComputing = "Parallel Computing" }
@String{ParComputing = "Parallel Comput." }
@String{PhilMag = "Philosophical Magazine" }
@String{PhilMag = "Philos. Mag." }
@String{ProcNAS = "Proceedings of the National Academy of Sciences
of the USA" }
@String{ProcNAS = "Proc. Nat. Acad. Sci. U. S. A." }
@String{Psychometrika = "Psychometrika" }
@String{QuartMath = "Quarterly Journal of Mathematics, Oxford, Series (2)" }
@String{QuartMath = "Quart. J. Math. Oxford Ser. (2)" }
@String{QuartApplMath = "Quarterly of Applied Mathematics" }
@String{QuartApplMath = "Quart. Appl. Math." }
@String{RevueInstStat = "Review of the International Statisical Institute" }
@String{RevueInstStat = "Rev. Inst. Internat. Statist." }
%SIAM
@String{JSIAM = "Journal of the Society for Industrial and Applied
Mathematics" }
@String{JSIAM = "J. Soc. Indust. Appl. Math." }
@String{JSIAMB = "Journal of the Society for Industrial and Applied
Mathematics, Series B, Numerical Analysis" }
@String{JSIAMB = "J. Soc. Indust. Appl. Math. Ser. B Numer. Anal." }
@String{SIAMAlgMeth = "{SIAM} Journal on Algebraic and Discrete Methods" }
@String{SIAMAlgMeth = "{SIAM} J. Algebraic Discrete Methods" }
@String{SIAMAppMath = "{SIAM} Journal on Applied Mathematics" }
@String{SIAMAppMath = "{SIAM} J. Appl. Math." }
@String{SIAMComp = "{SIAM} Journal on Computing" }
@String{SIAMComp = "{SIAM} J. Comput." }
@String{SIAMMatrix = "{SIAM} Journal on Matrix Analysis and Applications" }
@String{SIAMMatrix = "{SIAM} J. Matrix Anal. Appl." }
@String{SIAMNumAnal = "{SIAM} Journal on Numerical Analysis" }
@String{SIAMNumAnal = "{SIAM} J. Numer. Anal." }
@String{SIAMReview = "{SIAM} Review" }
@String{SIAMReview = "{SIAM} Rev." }
@String{SIAMSciStat = "{SIAM} Journal on Scientific and Statistical
Computing" }
@String{SIAMSciStat = "{SIAM} J. Sci. Statist. Comput." }
@String{SoftPracExp = "Software Practice and Experience" }
@String{SoftPracExp = "Software Prac. Experience" } % didn't find in AMS MR
@String{StatScience = "Statistical Science" }
@String{StatScience = "Statist. Sci." }
@String{Techno = "Technometrics" }
@String{USSRCompMathPhys = "{USSR} Computational Mathematics and Mathematical
Physics" }
@String{USSRCompMathPhys = "{U. S. S. R.} Comput. Math. and Math. Phys." }
@String{VLSICompSys = "Journal of {VLSI} and Computer Systems" }
@String{VLSICompSys = "J. {VLSI} Comput. Syst." }
@String{ZAngewMathMech = "Zeitschrift fur Angewandte Mathematik und
Mechanik" }
@String{ZAngewMathMech = "Z. Angew. Math. Mech." }
@String{ZAngewMathPhys = "Zeitschrift fur Angewandte Mathematik und Physik" }
@String{ZAngewMathPhys = "Z. Angew. Math. Phys." }
% Publishers % ================================================= |
@String{Academic = "Academic Press" }
@String{ACMPress = "{ACM} Press" }
@String{AdamHilger = "Adam Hilger" }
@String{AddisonWesley = "Addison-Wesley" }
@String{AllynBacon = "Allyn and Bacon" }
@String{AMS = "American Mathematical Society" }
@String{Birkhauser = "Birkha{\"u}ser" }
@String{CambridgePress = "Cambridge University Press" }
@String{Chelsea = "Chelsea" }
@String{ClaredonPress = "Claredon Press" }
@String{DoverPub = "Dover Publications" }
@String{Eyolles = "Eyolles" }
@String{HoltRinehartWinston = "Holt, Rinehart and Winston" }
@String{Interscience = "Interscience" }
@String{JohnsHopkinsPress = "The Johns Hopkins University Press" }
@String{JohnWileySons = "John Wiley and Sons" }
@String{Macmillan = "Macmillan" }
@String{MathWorks = "The Math Works Inc." }
@String{McGrawHill = "McGraw-Hill" }
@String{NatBurStd = "National Bureau of Standards" }
@String{NorthHolland = "North-Holland" }
@String{OxfordPress = "Oxford University Press" } %address Oxford or London?
@String{PergamonPress = "Pergamon Press" }
@String{PlenumPress = "Plenum Press" }
@String{PrenticeHall = "Prentice-Hall" }
@String{SIAMPub = "{SIAM} Publications" }
@String{Springer = "Springer-Verlag" }
@String{TexasPress = "University of Texas Press" }
@String{VanNostrand = "Van Nostrand" }
@String{WHFreeman = "W. H. Freeman and Co." }
%Entries
@article{fortin2012deap,
title={DEAP: Evolutionary Algorithms Made Easy},
author={Fortin, F{\'e}lix-Antoine and Rainville, Fran{\c{c}}ois-Michel De and Gardner, Marc-Andr{\'e} and Parizeau, Marc and Gagn{\'e}, Christian},
journal={Journal of Machine Learning Research},
volume={13},
number={Jul},
pages={2171--2175},
year={2012}
}
@article{tarapore2015evolvability,
title={Evolvability Signatures of Generative Encodings: Beyond Standard Performance Benchmarks},
author={Tarapore, Danesh and Mouret, Jean-Baptiste},
journal={Information Sciences},
volume={313},
pages={43--61},
year={2015},
publisher={Elsevier}
}
@inproceedings{clune2009evolving,
title={Evolving Coordinated Quadruped Gaits with the Hyperneat Generative Encoding},
author={Clune, Jeff and Beckmann, Benjamin E and Ofria, Charles and Pennock, Robert T},
booktitle={Evolutionary Computation, 2009. CEC'09. IEEE Congress on},
pages={2764--2771},
year={2009},
organization={IEEE}
}
@inproceedings{mengistu2016evolvability,
title={Evolvability Search: Directly Selecting for Evolvability in Order to Study and Produce It},
author={Mengistu, Henok and Lehman, Joel and Clune, Jeff},
booktitle={Proceedings of the 2016 on Genetic and Evolutionary Computation Conference},
pages={141--148},
year={2016},
organization={ACM}
}
@misc{paszke2017pytorch,
title={PyTorch},
author={Paszke, Adam and Gross, Sam and Chintala, Soumith and Chanan, Gregory},
year={2017}
}
@inproceedings{reisinger2005towards,
title={Towards an Empirical Measure of Evolvability},
author={Joseph Reisinger and Kenneth O. Stanley and Risto Miikkulainen},
booktitle={Genetic and Evolutionary Computation Conference {(GECCO2005)} Workshop Program},
address={Washington, D.C.},
publisher={ACM Press},
pages={257-264},
year={2005}
}
@inproceedings{reisinger2007acquiring,
title={Acquiring Evolvability Through Adaptive Representations},
author={Reisinger, Joseph and Miikkulainen, Risto},
booktitle={Proceedings of the 9th Annual Conference on Genetic and Evolutionary Computation},
pages={1045--1052},
year={2007},
organization={ACM}
}
@inproceedings{stanley2002efficient,
title={Efficient Evolution of Neural Network Topologies},
author={Stanley, Kenneth O and Miikkulainen, Risto},
booktitle={Evolutionary Computation, 2002. CEC'02. Proceedings of the 2002 Congress on},
volume={2},
pages={1757--1762},
year={2002},
organization={IEEE}
}
@article{liou2014autoencoder,
title={Autoencoder for Words},
author={Liou, Cheng-Yuan and Cheng, Wei-Chen and Liou, Jiun-Wei and Liou, Daw-Ran},
journal={Neurocomputing},
volume={139},
pages={84--96},
year={2014},
publisher={Elsevier}
}
@article{kingma2013auto,
title={Auto-Encoding Variational Bayes},
author={Kingma, Diederik P and Welling, Max},
journal={arXiv preprint arXiv:1312.6114},
year={2013}
}
@article{kouvaris2017evolution,
title={How Evolution Learns to Generalise: Using the Principles of Learning Theory to Understand the Evolution of Developmental Organisation},
author={Kouvaris, Kostas and Clune, Jeff and Kounios, Loizos and Brede, Markus and Watson, Richard A},
journal={PLoS Computational Biology},
volume={13},
number={4},
pages={e1005358},
year={2017},
publisher={Public Library of Science}
}
@article{lecun2015deep,
title={Deep Learning},
author={LeCun, Yann and Bengio, Yoshua and Hinton, Geoffrey},
journal={nature},
volume={521},
number={7553},
pages={436},
year={2015},
publisher={Nature Publishing Group}
}
@book{downing2015intelligence,
title={Intelligence Emerging: Adaptivity and Search in Evolving Neural Systems},
author={Downing, Keith L},
year={2015},
publisher={MIT Press}
}
@article{pigliucci2010genotype,
title={Genotype--Phenotype Mapping and the End of the Genes as Blueprint Metaphor},
author={Pigliucci, Massimo},
journal={Philosophical Transactions of the Royal Society B: Biological Sciences},
volume={365},
number={1540},
pages={557--566},
year={2010},
publisher={The Royal Society}
}
@article{alberch1991genes,
title={From Genes to Phenotype: Dynamical Systems and Evolvability},
author={Alberch, Pere},
journal={Genetica},
volume={84},
number={1},
pages={5--11},
year={1991},
publisher={Springer}
}
@article{watson2016can,
title={How Can Evolution Learn?},
author={Watson, Richard A and Szathm{\'a}ry, E{\"o}rs},
journal={Trends in ecology \& evolution},
volume={31},
number={2},
pages={147--157},
year={2016},
publisher={Elsevier}
}
@inproceedings{clune2008generative,
title={How a Generative Encoding Fares as Problem-Regularity Decreases},
author={Clune, Jeff and Ofria, Charles and Pennock, Robert T},
booktitle={International Conference on Parallel Problem Solving from Nature},
pages={358--367},
year={2008},
organization={Springer}
}
@article{pigliucci2008evolvability,
title={Is Evolvability Evolvable?},
author={Pigliucci, Massimo},
journal={Nature Reviews Genetics},
volume={9},
number={1},
pages={75},
year={2008},
publisher={Nature Publishing Group}
}
@inproceedings{tuinstra1990lack,
title={Lack of Response to Family Selection for Directional Asymmetry in Drosophila Melanogaster: Left and Right Are Not Distinguished in Development},
author={Tuinstra, EJ and De Jong, G and Scharloo, W},
booktitle={Proc. R. Soc. Lond. B},
volume={241},
number={1301},
pages={146--152},
year={1990},
organization={The Royal Society}
}
@article{coyne1987lack,
title={Lack of Response to Selection for Directional Asymmetry in Drosophila Melanogaster},
author={Coyne, Jerry A},
journal={Journal of Heredity},
volume={78},
number={2},
pages={119--119},
year={1987},
publisher={Oxford University Press}
}
@article{rimbault2013derived,
title={Derived Variants at Six Genes Explain Nearly Half of Size Reduction in Dog Breeds},
author={Rimbault, Maud and Beale, Holly C and Schoenebeck, Jeffrey J and Hoopes, Barbara C and Allen, Jeremy J and Kilroy-Glynn, Paul and Wayne, Robert K and Sutter, Nathan B and Ostrander, Elaine A},
journal={Genome Research},
volume={23},
number={12},
pages={1985--1995},
year={2013},
publisher={Cold Spring Harbor Lab}
}
@article{devesa2016multiple,
title={Multiple Effects of Growth Hormone in the Body: Is It Really the Hormone for Growth?},
author={Devesa, Jes{\'u}s and Almengl{\'o}, Cristina and Devesa, Pablo},
journal={Clinical Medicine Insights: Endocrinology and Diabetes},
volume={9},
pages={CMED--S38201},
year={2016},
publisher={SAGE Publications Sage UK: London, England}
}
@article{clune2011performance,
title={On the Performance of Indirect Encoding Across the Continuum of Regularity},
author={Clune, Jeff and Stanley, Kenneth O and Pennock, Robert T and Ofria, Charles},
journal={IEEE Transactions on Evolutionary Computation},
volume={15},
number={3},
pages={346--367},
year={2011},
publisher={IEEE}
}
@article{stanley2009hypercube,
title={A Hypercube-Based Encoding for Evolving Large-Scale Neural Networks},
author={Stanley, Kenneth O and D'Ambrosio, David B and Gauci, Jason},
journal={Artificial Life},
volume={15},
number={2},
pages={185--212},
year={2009},
publisher={MIT Press}
}
@inproceedings{woolley2010evolving,
title={Evolving a Single Scalable Controller for an Octopus Arm with a Variable Number of Segments},
author={Woolley, Brian G and Stanley, Kenneth O},
booktitle={International Conference on Parallel Problem Solving from Nature},
pages={270--279},
year={2010},
organization={Springer}
}
@article{kashtan2005spontaneous,
title={Spontaneous Evolution of Modularity and Network Motifs},
author={Kashtan, Nadav and Alon, Uri},
journal={Proceedings of the National Academy of Sciences of the United States of America},
volume={102},
number={39},
pages={13773--13778},
year={2005},
publisher={National Acad Sciences}
}
@article{wagner1996perspective,
title={Perspective: Complex Adaptations and the Evolution of Evolvability},
author={Wagner, G{\"u}nter P and Altenberg, Lee},
journal={Evolution},
volume={50},
number={3},
pages={967--976},
year={1996},
publisher={Wiley Online Library}
}
@article{kirschner1998evolvability,
title={Evolvability},
author={Kirschner, Marc and Gerhart, John},
journal={Proceedings of the National Academy of Sciences},
volume={95},
number={15},
pages={8420--8427},
year={1998},
publisher={National Acad Sciences}
}
@article{hu2010evolvability,
title={Evolvability and Speed of Evolutionary Algorithms in Light of Recent Developments in Biology},
author={Hu, Ting and Banzhaf, Wolfgang},
journal={Journal of Artificial Evolution and Applications},
volume={2010},
pages={1},
year={2010},
publisher={Hindawi Publishing Corp.}
}
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