.github/PULL_REQUEST_TEMPLATE.md

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+## Summary of Changes
+
+
+### Related issues
+
+Resolves ???

.github/labeler.yml

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+# see https://github.com/actions/labeler
+documentation:
+- any: ["docs/**"]
+#  all: ["!docs/changes.md"]
+
+integration:
+- any: ["skema/rest/**"]
+
+CI:
+- any: [".github/**", ".github/workflows/**"]
+
+docker:
+- any:
+  - "Dockerfile.skema-py"
+  - "Dockerfile.skema-py.dockerignore"
+  - "Dockerfile.skema-rs"
+  - "Dockerfile.skema-rs.dockerignore"
+
+tests:
+- any:
+  - "skema/gromet/execution_engine/tests/**"
+  - "skema/img2mml/tests/**"
+  - "skema/program_analysis/tests/**"
+  - "skema/program_analysis/comment_extractor/tests/**"
+  - "skema/program_analysis/tree_sitter_parsers/tests/**"
+  - "skema/program_analysis/CAST/matlab/tests/**"
+  - "skema/program_analysis/CAST/fortran/tests/**"
+  - "skema/program_analysis/CAST/python/tests/**"
+  - "skema/rest/tests/**"
+  - "skema/skema_py/tests/**"
+  - "skema/skema-rs/mathml/tests/**"
+  - "skema/skema-rs/skema/tests/**"
+  - "skema/text_reading/scala/src/test/**"
+
+Code2FN:
+- any: ["skema/gromet/**", "skema/program_analysis/**"]
+
+Equations:
+- any: ["skema/img2mml/**"]
+
+lang/Fortran:
+- any: ["skema/program_analysis/CAST/fortran/**"]
+
+lang/MATLAB:
+- any: ["skema/program_analysis/CAST/matlab/**"]
+
+lang/Python:
+- any: 
+  - "skema/program_analysis/CAST/pythonAST/**"
+  - "skema/program_analysis/CAST/python/**"
+
+lang/Rust:
+- any: ["skema/skema-rs/**"]
+
+MORAE:
+- any: ["skema/skema-rs/**"]
+
+ISA:
+- any: ["skema/isa/**"]
+
+Text Reading:
+- any: ["skema/text_reading/**", "skema/model_assembly/**"]

.github/workflows/add-labels-to-pr.yml

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+name: Add labels to PR
+
+on:
+  pull_request:
+    branches:
+      - main
+
+jobs:
+  triage:
+    permissions:
+      contents: read
+      pull-requests: write
+    runs-on: ubuntu-latest
+    steps:
+    - id: label-the-PR
+      uses: actions/labeler@v4
+      with:
+        dot: true

.github/workflows/changes-updated.yml.disabled

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+name: Check changes log
+
+on:
+  pull_request:
+    types: [opened]
+    branches:
+      - main
+
+jobs:
+  changed_files:
+    runs-on: ubuntu-latest
+    name: Ensure changes.md has been updated
+    steps:
+      - uses: actions/checkout@v3
+        with:
+          fetch-depth: 0
+
+      # Example 1
+      - name: Check changes.md
+        id: changed-files
+        uses: tj-actions/changed-files@v38
+        with:
+          files_yaml: |
+            doc:
+              - docs/changes.md
+
+      - name: Post reminder if changes have not been recorded
+        if: steps.changed-files-yaml.outputs.doc_any_changed == 'false'
+        uses: unsplash/comment-on-pr@v1.3.0
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+        with:
+          msg: "Don't forget to update docs/changes.md with a summary of your changes."
+          check_for_duplicate_msg: true
+          #delete_prev_regex_msg: "[0-9]"  # OPTIONAL
+          duplicate_msg_pattern: "Don't forget to update docs/changes.md with a summary of your changes."

.github/workflows/docker.yml

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+name: SKEMA docker
+
+on:
+  push:
+    branches: [main]
+    tags:
+      - "**"
+  pull_request:
+    branches: [main]
+  release:
+    types: [published]
+
+# builds and publishes docker images for the default branch.
+# images are tagged with short commit hash, latest, and any tags.
+
+jobs:
+  # Determine value for app version
+  app_version: 
+    name: "Determine app version"
+    runs-on: ubuntu-latest
+    outputs:
+      app_version: ${{ steps.app_version.outputs.app_version }}
+      commit: ${{ steps.app_version.outputs.commit }}
+    steps:
+    - name: Set APP_VERSION output
+      id: app_version
+      run: |
+        echo "app_version=${{github.ref_name}}"
+        if [ -z "${app_version}" ]; then
+            app_version=${{github.sha}}
+            echo "app_version=${app_version}"
+        fi
+        echo "app_version=$app_version" >> "$GITHUB_OUTPUT"
+        echo "commit=${{github.sha}}" >> "$GITHUB_OUTPUT"
+        echo "app_version=$app_version"
+        echo "commit=${{github.sha}}"
+  python:
+    name: "docker image for python components"
+    needs: [app_version]
+    runs-on: ubuntu-latest
+    steps:
+    # Setup docker
+    - name: Set up QEMU
+      uses: docker/setup-qemu-action@v3
+    # for multi-arch builds (ex. ARM 64)
+    - name: Set up Docker Buildx
+      id: buildx
+      uses: docker/setup-buildx-action@v3
+    # - name: Prepare buildx builder
+    #   run: |
+    #     docker buildx create --use --name "multiarch-builder" --platform linux/amd64,linux/arm64 --driver "docker-container"
+    - name: Inspect builder
+      run: |
+        echo "Name:      ${{ steps.buildx.outputs.name }}"
+        echo "Endpoint:  ${{ steps.buildx.outputs.endpoint }}"
+        echo "Status:    ${{ steps.buildx.outputs.status }}"
+        echo "Flags:     ${{ steps.buildx.outputs.flags }}"
+        echo "Platforms: ${{ steps.buildx.outputs.platforms }}"
+    # Checkout code
+    - name: Checkout code
+      uses: actions/checkout@v3
+    - name: Login to DockerHub
+      uses: docker/login-action@v3 
+      with:
+        username: ${{ secrets.LUM_ASKEM_DOCKERHUB_USERNAME }}
+        password: ${{ secrets.LUM_ASKEM_DOCKERHUB_TOKEN }}
+    - name: "Free disk space"
+      run: |
+        sudo apt-get update
+        sudo apt clean
+        sudo rm -rf /usr/share/dotnet
+        sudo rm -rf /opt/ghc
+        sudo rm -rf "/usr/local/share/boost"
+        sudo rm -rf "$AGENT_TOOLSDIRECTORY"
+
+    ########################################
+    # lumai/askem-skema-py (img2mml, isa, etc)
+    ########################################
+    - name: Tags for image
+      id: tags
+      # see https://github.com/docker/metadata-action
+      uses: docker/metadata-action@v4
+
+      with:
+        images: |
+          lumai/askem-skema-py
+          lumai/askem-skema-img2mml
+        tags: |
+          # latest
+          type=raw,value=latest
+          # version
+          type=semver,pattern={{version}}
+          # other tags
+          type=ref,event=tag
+          # short commit hash
+          type=sha
+
+    - name: Build and push image
+      # see https://github.com/docker/build-push-action
+      uses: docker/build-push-action@v5
+      with:
+        context: .
+        file: "Dockerfile.skema-py"
+        platforms: linux/amd64
+        #platforms: linux/amd64,linux/arm64
+        no-cache: true
+        pull: true
+        push: ${{ github.event_name != 'pull_request' }}
+        # references `tags` step in steps for current job
+        tags: ${{ steps.tags.outputs.tags }}
+        build-args: |
+          #APP_VERSION=${{needs.app_version.outputs.app_version}}
+          APP_VERSION=${{needs.app_version.outputs.commit}}
+
+  rust:
+    name: "docker image for rust components"
+    needs: [app_version]
+    runs-on: ubuntu-latest
+    steps:
+    # Setup docker
+    - name: Set up QEMU
+      uses: docker/setup-qemu-action@v3
+    # for multi-arch builds (ex. ARM 64)
+    - name: Set up Docker Buildx
+      id: buildx
+      uses: docker/setup-buildx-action@v3
+    # - name: Prepare buildx builder
+    #   run: |
+    #     docker buildx create --use --name "multiarch-builder" --platform linux/amd64,linux/arm64 --driver "docker-container"
+    - name: Inspect builder
+      run: |
+        echo "Name:      ${{ steps.buildx.outputs.name }}"
+        echo "Endpoint:  ${{ steps.buildx.outputs.endpoint }}"
+        echo "Status:    ${{ steps.buildx.outputs.status }}"
+        echo "Flags:     ${{ steps.buildx.outputs.flags }}"
+        echo "Platforms: ${{ steps.buildx.outputs.platforms }}"
+    # Checkout code
+    - name: Checkout code
+      uses: actions/checkout@v3
+    - name: Login to DockerHub
+      uses: docker/login-action@v2 
+      with:
+        username: ${{ secrets.LUM_ASKEM_DOCKERHUB_USERNAME }}
+        password: ${{ secrets.LUM_ASKEM_DOCKERHUB_TOKEN }}
+    - name: "Free disk space"
+      run: |
+        sudo apt clean
+        sudo rm -rf /usr/share/dotnet
+        sudo rm -rf /opt/ghc
+        sudo rm -rf "/usr/local/share/boost"
+        sudo rm -rf "$AGENT_TOOLSDIRECTORY"
+
+    ########################################
+    # lumai/askem-skema-rs
+    ########################################
+    - name: Tags for image
+      id: tags
+      # see https://github.com/docker/metadata-action
+      uses: docker/metadata-action@v4
+      with:
+        images: lumai/askem-skema-rs
+        tags: |
+          # latest
+          type=raw,value=latest
+          # version
+          type=semver,pattern={{version}}
+          # other tags
+          type=ref,event=tag
+          # short commit hash
+          type=sha
+
+    - name: Build and push image
+      # see https://github.com/docker/build-push-action
+      uses: docker/build-push-action@v5
+      with:
+        context: .
+        file: "Dockerfile.skema-rs"
+        platforms: linux/amd64
+        #platforms: linux/amd64,linux/arm64
+        no-cache: true
+        pull: true
+        push: ${{ github.event_name != 'pull_request' }}
+        # references `tags` step in steps for current job
+        tags: ${{ steps.tags.outputs.tags }}
+        build-args: |
+          #APP_VERSION=${{needs.app_version.outputs.app_version}}
+          APP_VERSION=${{needs.app_version.outputs.commit}}